Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

5543119 .. 5546103

Gene Structure 2985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAAGCTCACTGTTAAGACTCTCAAGGGTAGCCATTTTGAGATTAGGGTTCTTCCCACCGACACGATAATGGCGGTGAAGAAGAATATTGAAGATTCACAAAGCAAAGACAACTATCCTTGTGGGCAGCAATTACTGATTCACAATGGAAAGGTTTTGAAAGATGAAACTACCTTGGTGGAGAACAAGGTTACCGAGGAGGGTTTTCTTGTCGTGATGCTTAGCAAGAGCAAAACTGCAAGTTCAGCTGGTCCCTCTTCTACTCAGCCTACTTCTACCACGACATCTACCATATCTTCAACCACGCTTGCAGCTCCGTCGACAACCCAGTCTATTGCTGTGCCGGCTTCAAATTCTACTCCCGTTCAAGAACAACCAACGGCACAAAGTGACACCTATGGTCAAGCTGCTTCAACTTTAGTTAGTGGCAGTAGTATTGAGCAAATGGTTCAACAAATAATGGAAATGGGAGGAGGCAGTTGGGACAAAGAAACGGTTACTCGTGCACTTCGTGCAGCATATAACAACCCTGAGAGAGCAGTGGATTATCTATATTCTGGAATTCCTGAAACAGTAACCATTCCAGCAACTAATTTATCTGGAGTAGGATCTGGTAGAGAACTTACTGCTCCTCCTCCCTCTGGAGGCCCTAATTCATCTCCTCTGGATTTGTTTCCCCAGGAAGCAGTTTCTGATGCAGCAGGTGGAGATCTTGGAACGCTTGAATTCCTCAGAGGCAATGATCAGTTCCAACAATTACGCTCCATGGTCAATTCCAACCCCCAGATTCTGCAGCCTATGCTTCAAGAGCTCGGAAAGCAGAACCCCCAACTTCTGAGGCTAATTCAAGAGAACCAAGCCGAATTTCTTCAGTTACTAAACGAGCCCTACGAAGGATCTGACGGGGATGTGGATATCTTCGATCAACCTGATCAAGAAATGCCCCACTCAGTCAACGTTACCCCTGAAGAGCAAGAATCAATTGAACGGCTTGAGGCAATGGGGTTTGATAGAGCAATAGTCATAGAAGCCTTCCTTTCCTGTGACCGTAACGAGGAATTGGCTGCAAACTATCTACTAGAGCACTCAGCAGATTTTGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

368

Amino Acids

39.84

Weight (kDa)

4.4

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	3 - 53	5e-06	Ubiquitin family
UBA	PF00627	124 - 161	1.4e-11	UBA/TS-N domain
XPC-binding	PF09280	218 - 273	1.2e-23	XPC-binding domain
UBA	PF00627	300 - 336	7.6e-12	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	692
AasI	GACNNNNNNGTC	1 cut(s)	328
Acc36I	ACCTGC	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	320
AciI	CCGC	1 cut(s)	74
AclI	AACGTT	1 cut(s)	957
AclWI	GGATC	2 cut(s)	616, 904
AcsI	RAATTY	4 cut(s)	352, 561, 725, 863
AcuI	CTGAAG	2 cut(s)	854, 987
AdeI	CACNNNGTG	2 cut(s)	389, 512
AfiI	CCNNNNNNNGG	4 cut(s)	641, 644, 893, 1054
AjnI	CCWGG	1 cut(s)	678
AjuI	GAANNNNNNNTTGG	2 cut(s)	849, 881
AluBI	AGCT	5 cut(s)	7, 248, 314, 407, 811
AluI	AGCT	5 cut(s)	7, 248, 314, 407, 811
Alw21I	GWGCWC	3 cut(s)	508, 813, 1086
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	2 cut(s)	616, 904
AlwNI	CAGNNNCTG	2 cut(s)	692, 790
AoxI	GGCC	1 cut(s)	646
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	7 cut(s)	127, 311, 407, 515, 698, 793, 1064
ApoI	RAATTY	4 cut(s)	352, 561, 725, 863
Asp700I	GAANNNNTTC	1 cut(s)	867
AspS9I	GGNCC	2 cut(s)	251, 647
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	2 cut(s)	813, 888
BauI	CACGAG	1 cut(s)	501
Bbv12I	GWGCWC	3 cut(s)	508, 813, 1086
BbvI	GCAGC	7 cut(s)	139, 323, 394, 527, 710, 805, 1051
BceAI	ACGGC	2 cut(s)	396, 1004
BcgI	CGANNNNNNTGC	2 cut(s)	300, 334
BciT130I	CCWGG	1 cut(s)	680
BclI	TGATCA	2 cut(s)	742, 931
BfaI	CTAG	1 cut(s)	1079
BfmI	CTRYAG	1 cut(s)	791
BfuAI	ACCTGC	1 cut(s)	692
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	7 cut(s)	128, 312, 408, 516, 699, 794, 1065
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	7 cut(s)	129, 313, 409, 517, 700, 795, 1066
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	251, 647
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	680
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	2 cut(s)	207, 685
BmuI	ACTGGG	1 cut(s)	322
BpmI	CTGGAG	2 cut(s)	621, 663
Bpu1102I	GCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	2 cut(s)	8, 1013
BsaJI	CCNNGG	4 cut(s)	174, 195, 678, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	4 cut(s)	641, 644, 893, 1054
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	2 cut(s)	745, 1005
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	4 cut(s)	174, 195, 678, 765
BseGI	GGATG	1 cut(s)	913
BseLI	CCNNNNNNNGG	4 cut(s)	641, 644, 893, 1054
BseMI	GCAATG	2 cut(s)	745, 1005
BseMII	CTCAG	6 cut(s)	278, 522, 745, 827, 963, 1101
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	5 cut(s)	212, 486, 621, 624, 651
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	7 cut(s)	139, 323, 394, 527, 710, 805, 1051
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	1 cut(s)	648
BsiHKAI	GWGCWC	3 cut(s)	508, 813, 1086
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	2 cut(s)	237, 497
BslI	CCNNNNNNNGG	4 cut(s)	641, 644, 893, 1054
BsmFI	GGGAC	2 cut(s)	237, 497
BsnI	GGCC	1 cut(s)	648
Bsp1286I	GDGCHC	4 cut(s)	508, 813, 888, 1086
Bsp143I	GATC	6 cut(s)	608, 709, 742, 896, 922, 931
Bsp1720I	GCTNAGC	1 cut(s)	221
Bsp19I	CCATGG	1 cut(s)	765
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	648
BspCNI	CTCAG	6 cut(s)	277, 523, 744, 828, 962, 1100
BspLI	GGNNCC	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	795
BspMI	ACCTGC	1 cut(s)	692
BspPI	GGATC	2 cut(s)	616, 904
BspQI	GCTCTTC	1 cut(s)	963
BsrDI	GCAATG	2 cut(s)	745, 1005
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	4 cut(s)	174, 195, 678, 765
BssMI	GATC	6 cut(s)	608, 709, 742, 896, 922, 931
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	2 cut(s)	174, 765
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	4 cut(s)	13, 496, 574, 1049
Bst6I	CTCTTC	2 cut(s)	262, 963
BstAPI	GCANNNNNTGC	2 cut(s)	512, 799
BstC8I	GCNNGC	2 cut(s)	309, 345
BstDEI	CTNAG	7 cut(s)	221, 264, 531, 731, 836, 949, 1087
BstDSI	CCRYGG	1 cut(s)	765
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	913
BstKTI	GATC	6 cut(s)	611, 712, 745, 899, 925, 934
BstMBI	GATC	6 cut(s)	608, 709, 742, 896, 922, 931
BstMWI	GCNNNNNNNGC	6 cut(s)	245, 344, 512, 799, 808, 817
BstNI	CCWGG	1 cut(s)	680
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	1 cut(s)	791
BstSLI	GKGCMC	1 cut(s)	508
BstV1I	GCAGC	7 cut(s)	139, 323, 394, 527, 710, 805, 1051
BstX2I	RGATCY	3 cut(s)	608, 709, 896
BstYI	RGATCY	3 cut(s)	608, 709, 896
BsuRI	GGCC	1 cut(s)	648
BtgI	CCRYGG	1 cut(s)	765
BtsCI	GGATG	1 cut(s)	913
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	2 cut(s)	9, 546
BveI	ACCTGC	1 cut(s)	692
Cac8I	GCNNGC	2 cut(s)	309, 345
CaiI	CAGNNNCTG	2 cut(s)	692, 790
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	251, 647
CviAII	CATG	1 cut(s)	766
DdeI	CTNAG	7 cut(s)	221, 264, 531, 731, 836, 949, 1087
DpnI	GATC	6 cut(s)	610, 711, 744, 898, 924, 933
DpnII	GATC	6 cut(s)	608, 709, 742, 896, 922, 931
DraIII	CACNNNGTG	2 cut(s)	389, 512
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	262, 963
EarI	CTCTTC	2 cut(s)	262, 963
Ecl136II	GAGCTC	1 cut(s)	811
Eco130I	CCWWGG	2 cut(s)	174, 765
Eco24I	GRGCYC	2 cut(s)	813, 888
Eco32I	GATATC	1 cut(s)	916
Eco47I	GGWCC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	811
Eco57I	CTGAAG	2 cut(s)	854, 987
Eco91I	GGTNACC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	811
EcoO109I	RGGNCCY	1 cut(s)	647
EcoO65I	GGTNACC	1 cut(s)	190
EcoRI	GAATTC	2 cut(s)	561, 725
EcoRII	CCWGG	1 cut(s)	678
EcoRV	GATATC	1 cut(s)	916
EcoT14I	CCWWGG	2 cut(s)	174, 765
EcoT38I	GRGCYC	2 cut(s)	813, 888
ErhI	CCWWGG	2 cut(s)	174, 765
FaeI	CATG	1 cut(s)	769
FaiI	YATR	8 cut(s)	293, 399, 520, 522, 553, 767, 800, 1025
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FaqI	GGGAC	2 cut(s)	237, 497
FatI	CATG	1 cut(s)	765
FbaI	TGATCA	2 cut(s)	742, 931
FblI	GTMKAC	1 cut(s)	320
Fnu4HI	GCNGC	7 cut(s)	128, 312, 408, 516, 699, 794, 1065
FokI	GGATG	1 cut(s)	920
FriOI	GRGCYC	2 cut(s)	813, 888
Fsp4HI	GCNGC	7 cut(s)	128, 312, 408, 516, 699, 794, 1065
FspBI	CTAG	1 cut(s)	1079
GluI	GCNGC	7 cut(s)	128, 312, 408, 516, 699, 794, 1065
GsuI	CTGGAG	2 cut(s)	621, 663
HaeIII	GGCC	1 cut(s)	648
HapII	CCGG	1 cut(s)	344
Hin1II	CATG	1 cut(s)	769
HincII	GTYRAC	2 cut(s)	321, 955
HindII	GTYRAC	2 cut(s)	321, 955
HinfI	GANTC	5 cut(s)	19, 95, 139, 787, 977
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	3 cut(s)	321, 506, 955
Hpy188I	TCNGA	5 cut(s)	694, 734, 815, 837, 901
Hpy8I	GTNNAC	3 cut(s)	321, 506, 955
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	887, 1042
HpyCH4III	ACNGT	4 cut(s)	13, 496, 574, 1049
HpyCH4IV	ACGT	1 cut(s)	957
HpyCH4V	TGCA	7 cut(s)	239, 311, 506, 515, 698, 793, 1067
HpyF10VI	GCNNNNNNNGC	6 cut(s)	245, 344, 512, 799, 808, 817
HpyF3I	CTNAG	7 cut(s)	221, 264, 531, 731, 836, 949, 1087
HpySE526I	ACGT	1 cut(s)	957
Hsp92II	CATG	1 cut(s)	769
KroI	GCCGGC	1 cut(s)	343
KroNI	GCCGGC	1 cut(s)	345
Ksp22I	TGATCA	2 cut(s)	742, 931
Kzo9I	GATC	6 cut(s)	608, 709, 742, 896, 922, 931
LguI	GCTCTTC	1 cut(s)	963
LmnI	GCTCC	3 cut(s)	319, 634, 767
Lsp1109I	GCAGC	7 cut(s)	139, 323, 394, 527, 710, 805, 1051
LweI	GCATC	2 cut(s)	207, 685
MaeI	CTAG	1 cut(s)	1079
MaeII	ACGT	1 cut(s)	957
MaeIII	GTNAC	8 cut(s)	190, 389, 496, 574, 873, 958, 1043, 1049
MalI	GATC	6 cut(s)	610, 711, 744, 898, 924, 933
MboI	GATC	6 cut(s)	608, 709, 742, 896, 922, 931
MboII	GAAGA	9 cut(s)	44, 91, 94, 104, 249, 288, 860, 910, 980
MfeI	CAATTG	1 cut(s)	981
MflI	RGATCY	3 cut(s)	608, 709, 896
MhlI	GDGCHC	4 cut(s)	508, 813, 888, 1086
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	775, 801
MroNI	GCCGGC	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	867
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	680
MunI	CAATTG	1 cut(s)	981
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	6 cut(s)	245, 344, 512, 799, 808, 817
NaeI	GCCGGC	1 cut(s)	345
NcoI	CCATGG	1 cut(s)	765
NdeII	GATC	6 cut(s)	608, 709, 742, 896, 922, 931
NgoMIV	GCCGGC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	769
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	2 cut(s)	389, 1043
PaqCI	CACCTGC	1 cut(s)	692
PciSI	GCTCTTC	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	2 cut(s)	508, 888
PdiI	GCCGGC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	867
PfeI	GAWTC	4 cut(s)	95, 139, 787, 977
PkrI	GCNGC	7 cut(s)	129, 313, 409, 517, 700, 795, 1066
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	813
Psp1406I	AACGTT	1 cut(s)	957
Psp6I	CCWGG	1 cut(s)	678
PspEI	GGTNACC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	251, 647
PstI	CTGCAG	1 cut(s)	795
PstNI	CAGNNNCTG	2 cut(s)	692, 790
PsuI	RGATCY	3 cut(s)	608, 709, 896
PvuII	CAGCTG	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	813
SalI	GTCGAC	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	963
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	7 cut(s)	128, 312, 408, 516, 699, 794, 1065
Sau3AI	GATC	6 cut(s)	608, 709, 742, 896, 922, 931
Sau96I	GGNCC	2 cut(s)	251, 647
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	4 cut(s)	508, 813, 888, 1086
SfaNI	GCATC	2 cut(s)	207, 685
SfcI	CTRYAG	1 cut(s)	791
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	2 cut(s)	23, 992
SmoI	CTYRAG	2 cut(s)	23, 992
SsiI	CCGC	1 cut(s)	74
SspI	AATATT	1 cut(s)	88
SspMI	CTAG	1 cut(s)	1079
SstI	GAGCTC	1 cut(s)	813
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	2 cut(s)	174, 765
TaaI	ACNGT	4 cut(s)	13, 496, 574, 1049
TaiI	ACGT	1 cut(s)	960
TaqI	TCGA	2 cut(s)	320, 921
TfiI	GAWTC	4 cut(s)	95, 139, 787, 977
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	16, 546
TseFI	GTSAC	2 cut(s)	389, 1043
TseI	GCWGC	7 cut(s)	127, 311, 407, 515, 698, 793, 1064
Tsp45I	GTSAC	2 cut(s)	389, 1043
TspDTI	ATGAA	3 cut(s)	17, 180, 645
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	16, 546
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	4 cut(s)	352, 561, 725, 863
XmiI	GTMKAC	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	867
XspI	CTAG	1 cut(s)	1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.