Rroxscaffold_5G00338170

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001350
Physical Location & Seq
Forward (+)
6361320 .. 6364731
3412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338170.1

Sequence Viewer

Length: 339 bp
ATGGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAATCTTGAGCAGACTATTCAACAGATAATGGATATGGGTGGTGGAAATTGGGACAGAGAAACAGTTTACACAGTATTCCAGAAACAGCGGGAAGTTGCAGTGCTCGTGACTTATTTCCCCGTAAGTCGTGCAACCGAAACAGGCATAACCAATGCTCCACCTATCTCCAGAGCAGCTAATTCAGGTCCCCTAAATATGTTTCCGCAGTGTACTCACAAAGCCAATCAATCTAGGCACTTCGAGCCAACATCTCCTGGAATTCAAGGATGGACCTCTCCTTCTGAAGCTTCATGTCTTGCCTAA

Protein Analysis

112

Amino Acids

12.1

Weight (kDa)

6.04

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 124, 239
AcsI RAATTY 2 cut(s) 19, 294
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 247
AgsI TTSAA 2 cut(s) 56, 299
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 3 cut(s) 11, 212, 323
AluI AGCT 3 cut(s) 11, 212, 323
Alw21I GWGCWC 1 cut(s) 141
ApeKI GCWGC 2 cut(s) 11, 209
ApoI RAATTY 2 cut(s) 19, 294
AspS9I GGNCC 2 cut(s) 221, 306
AvaII GGWCC 2 cut(s) 221, 306
BauI CACGAG 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 297
BciT130I CCWGG 1 cut(s) 291
BfaI CTAG 1 cut(s) 267
BisI GCNGC 2 cut(s) 12, 210
BlsI GCNGC 2 cut(s) 13, 211
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 221, 306
BmgT120I GGNCC 2 cut(s) 221, 306
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 141
BslFI GGGAC 2 cut(s) 101, 207
BsmFI GGGAC 2 cut(s) 101, 207
Bsp1286I GDGCHC 1 cut(s) 141
BspACI CCGC 2 cut(s) 124, 239
BspLI GGNNCC 1 cut(s) 223
BssSI CACGAG 1 cut(s) 140
Bst2BI CACGAG 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 100, 109
BstF5I GGATG 1 cut(s) 308
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 221
BtsCI GGATG 1 cut(s) 308
BtsI GCAGTG 2 cut(s) 141, 248
BtsIMutI CAGTG 2 cut(s) 141, 248
Cfr13I GGNCC 2 cut(s) 221, 306
CseI GACGC 1 cut(s) 3
Csp6I GTAC 1 cut(s) 246
CviAII CATG 1 cut(s) 327
CviJI RGCY 5 cut(s) 11, 212, 257, 280, 323
CviKI_1 RGCY 5 cut(s) 11, 212, 257, 280, 323
CviQI GTAC 1 cut(s) 246
Eco47I GGWCC 2 cut(s) 221, 306
Eco57I CTGAAG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 289
FaeI CATG 1 cut(s) 330
FaiI YATR 4 cut(s) 71, 182, 233, 328
FaqI GGGAC 2 cut(s) 101, 207
FatI CATG 1 cut(s) 326
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 12, 210
FokI GGATG 1 cut(s) 315
Fsp4HI GCNGC 2 cut(s) 12, 210
FspBI CTAG 1 cut(s) 267
GluI GCNGC 2 cut(s) 12, 210
GsuI CTGGAG 1 cut(s) 187
HgaI GACGC 1 cut(s) 3
Hin1II CATG 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 321
Hpy166II GTNNAC 2 cut(s) 103, 246
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 4 cut(s) 41, 115, 142, 204
Hpy8I GTNNAC 2 cut(s) 103, 246
HpyAV CCTTC 1 cut(s) 324
HpyCH4III ACNGT 2 cut(s) 100, 109
HpyCH4V TGCA 2 cut(s) 134, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
Hsp92II CATG 1 cut(s) 330
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 7 cut(s) 15, 128, 162, 204, 217, 276, 303
Lsp1109I GCAGC 1 cut(s) 221
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 4 cut(s) 19, 82, 214, 294
MnlI CCTC 1 cut(s) 319
MspA1I CMGCKG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 277
NlaIII CATG 1 cut(s) 330
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 2 cut(s) 13, 211
PpuMI RGGWCCY 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 221, 306
PspPPI RGGWCCY 1 cut(s) 221
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SatI GCNGC 2 cut(s) 12, 210
Sau96I GGNCC 2 cut(s) 221, 306
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 141
SetI ASST 6 cut(s) 13, 199, 214, 223, 311, 325
SinI GGWCC 2 cut(s) 221, 306
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 4 cut(s) 19, 82, 214, 294
SsiI CCGC 2 cut(s) 124, 239
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 100, 109
TaqI TCGA 1 cut(s) 276
TasI AATT 4 cut(s) 19, 82, 214, 294
TatI WGTACW 1 cut(s) 245
TscAI CASTG 2 cut(s) 141, 248
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 11, 209
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 2 cut(s) 141, 248
VpaK11BI GGWCC 2 cut(s) 221, 306
XapI RAATTY 2 cut(s) 19, 294
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.