Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

21590488 .. 21596117

Gene Structure 5630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAAGCTCACTGTAAAGACCCTCAAGGGCAGCCATTTCGAAATTAGGGTTCAGCCCACTGACACCGTAATGGCTGTGAAGAAGAACATTGAGGACATACAAGGGAAAGATAACTACCCGTGTGGGCAGCAGTTACTCATACACAATGGCAAGGTCTTGAAAGACGAAACCACCTTGGTCGACAACAAGGTCACTGAGGATGGTTTTCTTGTTGTCATGCTTAGCAAGAGTAAAACTTCAGGCTTAGCAGGGGCTTCATCTGCTCAGCCTGCTTCTACAATTCCACCTACAACTGCACCAATCACAACTTCCACTACCAGAGCTGAAGCTCCCATACAAACACCGCCCTCTGAGAGTACCACACCTGCTTCAGATACTGCTGATGTGCATACTGATACCTATGGTCAAGCTGCATCAAACTTAGTTGCTGGAACTAATCTTGATGAGACTATTCAACAAATAATGGATATGGGTGGTGGAAATTGGGACAGGGAAACAGTTACACGTGCACTTCGAGCGGCTTACAACAACCCAGAGCGAGCAGTGGACTACTTATACTCTAGTATTCCAGAAACAGCTGAAGTTGCAGTGCCTGTGGCCCATTTCCCTGGAAGTCAGGCAACTGAAACAGGCATCACCAATGCTCCACCTGTGTCTGGAGCGCCCAATTCAGCTCCCCTGAATATGTTTCCACAGGAAGCATTGTCCGGTGCTGGTGCTGGTGCACTTGGATCCCTAGACTTCCTCAGAAACAATCATCAGTTCCAGACGTTGCGTTCAATGGTGCAAGCAAACCCACAAATTTTACAGCCCATGCTGCAGGAGCTTGGAAAGCAAAACCCCCAGCTTTTAAGATTAATTCAGGAGCACCACGCCGAGTTCCTCCAGTTAATAAATGAACCTCTTGAGGGTTCTGAAGGTGACATGTTTGATCAGCCTGATCAAGAAATGCCACATGCTATCAATGTAACTCCAGCAGAACAGGAGGCTATTGAACGACTTGAGGCAATGGGATTTGATAGAGCTTTGGTGATTGAAGCGTTTTTGGCATGTGACCGCAATGAAGAACTGGCAGCCAACTATCTACTGGAGAATGCTGGAGATTTTGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

372

Amino Acids

40.05

Weight (kDa)

4.55

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 73	5.2e-06	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 76	1e-14	Ubiquitin family
UBA	PF00627	148 - 185	3.5e-11	UBA/TS-N domain
XPC-binding	PF09280	246 - 301	1.4e-22	XPC-binding domain
UBA	PF00627	327 - 362	2.5e-11	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	373
AasI	GACNNNNNNGTC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	373
AccBSI	CCGCTC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	3 cut(s)	344, 518, 1057
AclWI	GGATC	2 cut(s)	726, 739
AcsI	RAATTY	1 cut(s)	801
AcuI	CTGAAG	5 cut(s)	222, 345, 354, 600, 936
AcvI	CACGTG	1 cut(s)	506
AfaI	GTAC	1 cut(s)	358
AfiI	CCNNNNNNNGG	2 cut(s)	656, 908
AflIII	ACRYGT	2 cut(s)	503, 924
AgsI	TTSAA	6 cut(s)	160, 455, 780, 995, 1037, 1109
AjnI	CCWGG	1 cut(s)	607
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	9 cut(s)	7, 323, 329, 410, 578, 674, 826, 847, 1025
AluI	AGCT	9 cut(s)	7, 323, 329, 410, 578, 674, 826, 847, 1025
Alw21I	GWGCWC	3 cut(s)	511, 727, 870
Alw26I	GTCTC	1 cut(s)	440
Alw44I	GTGCAC	2 cut(s)	507, 723
AlwI	GGATC	2 cut(s)	726, 739
AlwNI	CAGNNNCTG	2 cut(s)	377, 593
AoxI	GGCC	1 cut(s)	597
ApaLI	GTGCAC	2 cut(s)	507, 723
ApeKI	GCWGC	5 cut(s)	30, 127, 410, 817, 1073
ApoI	RAATTY	1 cut(s)	801
AseI	ATTAAT	1 cut(s)	857
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	3 cut(s)	628, 932, 1042
AsuII	TTCGAA	1 cut(s)	39
BaeGI	GKGCMC	2 cut(s)	511, 727
BamHI	GGATCC	1 cut(s)	731
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
BbrPI	CACGTG	1 cut(s)	506
Bbv12I	GWGCWC	3 cut(s)	511, 727, 870
BbvI	GCAGC	5 cut(s)	42, 139, 397, 804, 1085
BccI	CCATC	1 cut(s)	194
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	1 cut(s)	609
BclI	TGATCA	2 cut(s)	931, 940
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	2 cut(s)	561, 737
BfmI	CTRYAG	1 cut(s)	818
BfoI	RGCGCY	1 cut(s)	665
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	6 cut(s)	31, 128, 411, 519, 818, 1074
BlpI	GCTNAGC	3 cut(s)	221, 244, 264
BlsI	GCNGC	6 cut(s)	32, 129, 412, 520, 819, 1075
Bme1390I	CCNGG	1 cut(s)	609
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	1 cut(s)	733
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	2 cut(s)	422, 642
BpmI	CTGGAG	4 cut(s)	678, 869, 957, 1109
Bpu1102I	GCTNAGC	3 cut(s)	221, 244, 264
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	3 cut(s)	8, 926, 1022
BsaAI	YACGTR	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	174, 607
BsaWI	WCCGGW	1 cut(s)	707
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 908
Bse1I	ACTGG	3 cut(s)	886, 1074, 1092
Bse3DI	GCAATG	2 cut(s)	1014, 1066
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	174, 607
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	656, 908
BseMI	GCAATG	2 cut(s)	1014, 1066
BseMII	CTCAG	4 cut(s)	186, 278, 342, 760
BseNI	ACTGG	3 cut(s)	886, 1074, 1092
BseSI	GKGCMC	2 cut(s)	511, 727
BseXI	GCAGC	5 cut(s)	42, 139, 397, 804, 1085
BseYI	CCCAGC	1 cut(s)	843
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	599
BsiHKAI	GWGCWC	3 cut(s)	511, 727, 870
BsiSI	CCGG	1 cut(s)	708
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	656, 908
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	1099
BsnI	GGCC	1 cut(s)	599
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	3 cut(s)	511, 727, 870
Bsp143I	GATC	3 cut(s)	731, 931, 940
Bsp1720I	GCTNAGC	3 cut(s)	221, 244, 264
BspACI	CCGC	3 cut(s)	344, 518, 1057
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	4 cut(s)	187, 277, 343, 759
BspLI	GGNNCC	1 cut(s)	733
BspMAI	CTGCAG	1 cut(s)	822
BspMI	ACCTGC	1 cut(s)	373
BspPI	GGATC	2 cut(s)	726, 739
BspT104I	TTCGAA	1 cut(s)	39
BsrBI	CCGCTC	1 cut(s)	518
BsrDI	GCAATG	2 cut(s)	1014, 1066
BsrI	ACTGG	3 cut(s)	886, 1074, 1092
BssECI	CCNNGG	2 cut(s)	174, 607
BssMI	GATC	3 cut(s)	731, 931, 940
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	3 cut(s)	13, 67, 499
BstBAI	YACGTR	1 cut(s)	506
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	270, 540, 789
BstDEI	CTNAG	7 cut(s)	195, 221, 244, 264, 351, 421, 746
BstF5I	GGATG	1 cut(s)	205
BstH2I	RGCGCY	1 cut(s)	665
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	3 cut(s)	734, 934, 943
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	3 cut(s)	731, 931, 940
BstMWI	GCNNNNNNNGC	8 cut(s)	260, 269, 515, 584, 817, 823, 832, 1046
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	3 cut(s)	928, 959, 1053
BstSCI	CCNGG	1 cut(s)	607
BstSFI	CTRYAG	1 cut(s)	818
BstSLI	GKGCMC	2 cut(s)	511, 727
BstV1I	GCAGC	5 cut(s)	42, 139, 397, 804, 1085
BstX2I	RGATCY	1 cut(s)	731
BstXI	CCANNNNNNTGG	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	731
BsuRI	GGCC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	2 cut(s)	549, 594
BtsIMutI	CAGTG	5 cut(s)	9, 57, 192, 549, 594
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	3 cut(s)	270, 540, 789
CaiI	CAGNNNCTG	2 cut(s)	377, 593
CfoI	GCGC	1 cut(s)	664
Cfr13I	GGNCC	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	5 cut(s)	217, 814, 925, 956, 1050
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	7 cut(s)	195, 221, 244, 264, 351, 421, 746
DpnI	GATC	3 cut(s)	733, 933, 942
DpnII	GATC	3 cut(s)	731, 931, 940
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	174
Eco57I	CTGAAG	5 cut(s)	222, 345, 354, 600, 936
Eco72I	CACGTG	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	5 cut(s)	220, 817, 928, 959, 1053
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	5 cut(s)	216, 813, 924, 955, 1049
FbaI	TGATCA	2 cut(s)	931, 940
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	6 cut(s)	31, 128, 411, 519, 818, 1074
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	6 cut(s)	31, 128, 411, 519, 818, 1074
FspBI	CTAG	2 cut(s)	561, 737
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	6 cut(s)	31, 128, 411, 519, 818, 1074
GsaI	CCCAGC	1 cut(s)	847
GsuI	CTGGAG	4 cut(s)	678, 869, 957, 1109
HaeII	RGCGCY	1 cut(s)	665
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	1 cut(s)	708
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	5 cut(s)	220, 817, 928, 959, 1053
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	708
HphI	GGTGA	3 cut(s)	628, 932, 1042
Hpy166II	GTNNAC	4 cut(s)	181, 509, 547, 725
Hpy188I	TCNGA	4 cut(s)	352, 373, 749, 916
Hpy188III	TCNNGA	8 cut(s)	157, 440, 569, 657, 766, 863, 905, 944
Hpy8I	GTNNAC	4 cut(s)	181, 509, 547, 725
HpyAV	CCTTC	1 cut(s)	911
HpyCH4III	ACNGT	3 cut(s)	13, 67, 499
HpyCH4IV	ACGT	2 cut(s)	505, 770
HpyCH4V	TGCA	8 cut(s)	296, 388, 413, 509, 587, 725, 787, 820
HpyF10VI	GCNNNNNNNGC	8 cut(s)	260, 269, 515, 584, 817, 823, 832, 1046
HpyF3I	CTNAG	7 cut(s)	195, 221, 244, 264, 351, 421, 746
HpySE526I	ACGT	2 cut(s)	505, 770
Hsp92II	CATG	5 cut(s)	220, 817, 928, 959, 1053
HspAI	GCGC	1 cut(s)	662
Ksp22I	TGATCA	2 cut(s)	931, 940
Kzo9I	GATC	3 cut(s)	731, 931, 940
LmnI	GCTCC	6 cut(s)	334, 649, 659, 679, 823, 865
Lsp1109I	GCAGC	5 cut(s)	42, 139, 397, 804, 1085
LweI	GCATC	2 cut(s)	422, 642
MaeI	CTAG	2 cut(s)	561, 737
MaeII	ACGT	2 cut(s)	505, 770
MaeIII	GTNAC	6 cut(s)	132, 190, 499, 920, 967, 1052
MalI	GATC	3 cut(s)	733, 933, 942
MbiI	CCGCTC	1 cut(s)	518
MboI	GATC	3 cut(s)	731, 931, 940
MboII	GAAGA	3 cut(s)	91, 94, 1076
MflI	RGATCY	1 cut(s)	731
MhlI	GDGCHC	3 cut(s)	511, 727, 870
MluCI	AATT	6 cut(s)	42, 279, 481, 667, 801, 858
MseI	TTAA	3 cut(s)	851, 857, 890
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	1 cut(s)	708
MspR9I	CCNGG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	1099
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	8 cut(s)	260, 269, 515, 584, 817, 823, 832, 1046
NdeII	GATC	3 cut(s)	731, 931, 940
NlaIII	CATG	5 cut(s)	220, 817, 928, 959, 1053
NlaIV	GGNNCC	1 cut(s)	733
NmeAIII	GCCGAG	1 cut(s)	901
NmuCI	GTSAC	3 cut(s)	190, 920, 1052
NspI	RCATGY	3 cut(s)	928, 959, 1053
NspV	TTCGAA	1 cut(s)	39
PaqCI	CACCTGC	1 cut(s)	373
PciI	ACATGT	1 cut(s)	924
PcsI	WCGNNNNNNNCGW	1 cut(s)	511
PctI	GAATGC	1 cut(s)	1099
PkrI	GCNGC	6 cut(s)	32, 129, 412, 520, 819, 1075
PmaCI	CACGTG	1 cut(s)	506
PmlI	CACGTG	1 cut(s)	506
Ppu21I	YACGTR	1 cut(s)	506
PscI	ACATGT	1 cut(s)	924
PshBI	ATTAAT	1 cut(s)	857
Psp6I	CCWGG	1 cut(s)	607
PspCI	CACGTG	1 cut(s)	506
PspFI	CCCAGC	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	1 cut(s)	733
PspPI	GGNCC	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	822
PstNI	CAGNNNCTG	2 cut(s)	377, 593
PsuI	RGATCY	1 cut(s)	731
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	68
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	851, 857, 890
SatI	GCNGC	6 cut(s)	31, 128, 411, 519, 818, 1074
Sau3AI	GATC	3 cut(s)	731, 931, 940
Sau96I	GGNCC	1 cut(s)	598
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	3 cut(s)	511, 727, 870
SfaNI	GCATC	2 cut(s)	422, 642
SfcI	CTRYAG	1 cut(s)	818
SfuI	TTCGAA	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	3 cut(s)	23, 905, 1001
SmoI	CTYRAG	3 cut(s)	23, 905, 1001
Sse9I	AATT	6 cut(s)	42, 279, 481, 667, 801, 858
SsiI	CCGC	3 cut(s)	344, 518, 1057
SspMI	CTAG	2 cut(s)	561, 737
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	13, 67, 499
TaiI	ACGT	2 cut(s)	508, 773
TaqI	TCGA	3 cut(s)	39, 180, 514
TasI	AATT	6 cut(s)	42, 279, 481, 667, 801, 858
TauI	GCSGC	1 cut(s)	521
Tru1I	TTAA	3 cut(s)	851, 857, 890
Tru9I	TTAA	3 cut(s)	851, 857, 890
TscAI	CASTG	5 cut(s)	16, 64, 199, 549, 594
TseFI	GTSAC	3 cut(s)	190, 920, 1052
TseI	GCWGC	5 cut(s)	30, 127, 410, 817, 1073
Tsp45I	GTSAC	3 cut(s)	190, 920, 1052
TspDTI	ATGAA	4 cut(s)	17, 246, 912, 1077
TspRI	CASTG	5 cut(s)	16, 64, 199, 549, 594
VneI	GTGCAC	2 cut(s)	507, 723
VspI	ATTAAT	1 cut(s)	857
XapI	RAATTY	1 cut(s)	801
XceI	RCATGY	3 cut(s)	928, 959, 1053
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1084
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	2 cut(s)	561, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.