Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

29971989 .. 29975359

Gene Structure 3371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAAGCTCACCGTTAAAACTCTCAAGGGCAGTCATTTTGAAATTAGGGTTTTACCCTCCGATACGATAATGGCGGTGAAGAAGAATATAGAAGATTCACAAGGAAAAGACAATTATCCATGTGGGCAGCAATTGTTGATTCACAATGGAAAAGTTTTGAAAGATGAAACTAGCCTGGTGGAGAACAAAGTTACGGAGGAAGGATTTCTCGTCGTTATGCTTAGCAAGAGCAAATCTGGAGGTTCAGCTGGTCAGGCTTCGGTTCAGACTTCTTCTGTTTCACAGCCTGTTTCCGCTACCACATCTTCGACTAAGCCTGCAGCTCCATCTACAACCCAGTCTTCACCTGTTCCTGCTTCACCTATTCCTGCTCAAGAACAACCGGCGGCACAGACTGACACCTATGGACAAGCTGCGTCAACATTAGTTAGTGGTAGTAGTCTTGAGCAAATGGTCCAACAGATAATGGAAATGGGAGGTGGAAGTTGGGACAAAGAAACAGTTACTCGTGCACTTCGTGCAGCTTATAACAACCCTGAGAGAGCAGTGGATTATTTGTACTCTGGAATTCCTCAAACTGCTGAAGTAGCTGTGCCAGTACCTGAGGCTCAGATTGCAGGATCCGGTGCAGCCCCTGTTGCACCTGCATCTGGAGGACCTAACTCATCTCCTTTGGATTTATTTCCTCAGGAAACAGTTGCTGCTGCTGGCTCTGGAGATCTTGGGACACTTGAATTTCTTAGAAACAATGACCAGTTCCAACAATTACGCACCATGGTCCATTCCAACCCTCAAATTCTTCAGCCCATGCTTCAGGAACTTGGAAAGCAAAACCCTCAACTTCTGAGGCTAATTCAAGAAAACCAGGCAGAGTTTCTTCAGTTAGTAAATGAGCCCTATGAGGGTTCTGACGGGGAGGGGGACATGTTCGATCAACCCGAGCAAGAAATGCCACATGCCATTAACGTTACCCCAGCAGAACAAGAAGCGATTCAACGGCTCGAGGCAATGGGATTTGATAGAGCCTTAGTAATAGAAGCGTTCCTCGCATGTGACCGAAATGAAGAATTGGCAGCTAACTATCTATTGGAGAACTCAGGTGACTTTGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

371

Amino Acids

39.75

Weight (kDa)

4.48

Isoelectric Point (pI)

54.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	3 - 76	1.9e-13	Ubiquitin family
UBA	PF00627	148 - 186	1.1e-11	UBA/TS-N domain
XPC-binding	PF09280	244 - 299	1.7e-23	XPC-binding domain
UBA	PF00627	327 - 362	1.3e-11	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
AarI	CACCTGC	1 cut(s)	652
Acc36I	ACCTGC	1 cut(s)	652
AciI	CCGC	3 cut(s)	74, 294, 386
AclI	AACGTT	1 cut(s)	966
AclWI	GGATC	2 cut(s)	615, 628
AcsI	RAATTY	3 cut(s)	567, 734, 795
AcuI	CTGAAG	4 cut(s)	603, 785, 797, 863
AdeI	CACNNNGTG	1 cut(s)	518
AfaI	GTAC	2 cut(s)	560, 600
AfiI	CCNNNNNNNGG	2 cut(s)	650, 902
AflIII	ACRYGT	1 cut(s)	924
AgsI	TTSAA	6 cut(s)	41, 160, 734, 857, 995, 1109
AjnI	CCWGG	2 cut(s)	174, 864
AluBI	AGCT	7 cut(s)	7, 248, 323, 413, 524, 590, 1076
AluI	AGCT	7 cut(s)	7, 248, 323, 413, 524, 590, 1076
Alw21I	GWGCWC	1 cut(s)	514
Alw44I	GTGCAC	1 cut(s)	510
AlwI	GGATC	2 cut(s)	615, 628
AlwNI	CAGNNNCTG	3 cut(s)	602, 635, 701
Ama87I	CYCGRG	2 cut(s)	938, 1001
ApaLI	GTGCAC	1 cut(s)	510
ApeKI	GCWGC	8 cut(s)	127, 320, 413, 521, 629, 701, 704, 1073
ApoI	RAATTY	3 cut(s)	567, 734, 795
Asp700I	GAANNNNTTC	2 cut(s)	204, 990
AspS9I	GGNCC	3 cut(s)	454, 656, 778
AsuHPI	GGTGA	4 cut(s)	88, 336, 351, 1112
AvaI	CYCGRG	2 cut(s)	938, 1001
AvaII	GGWCC	3 cut(s)	454, 656, 778
AxyI	CCTNAGG	2 cut(s)	603, 687
BaeGI	GKGCMC	1 cut(s)	514
BamHI	GGATCC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	897
BauI	CACGAG	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	8 cut(s)	139, 332, 400, 533, 641, 688, 691, 1085
BccI	CCATC	1 cut(s)	334
BceAI	ACGGC	1 cut(s)	1013
BciT130I	CCWGG	2 cut(s)	176, 866
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	652
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	9 cut(s)	128, 321, 387, 414, 522, 630, 702, 705, 1074
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	9 cut(s)	129, 322, 388, 415, 523, 631, 703, 706, 1075
Bme1390I	CCNGG	2 cut(s)	176, 866
Bme18I	GGWCC	3 cut(s)	454, 656, 778
BmeT110I	CYCGRG	2 cut(s)	938, 1001
BmgT120I	GGNCC	3 cut(s)	454, 656, 778
BmiI	GGNNCC	1 cut(s)	622
BmrFI	CCNGG	2 cut(s)	176, 866
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	333
BpmI	CTGGAG	3 cut(s)	258, 672, 735
Bpu1102I	GCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	3 cut(s)	8, 357, 464
BsaJI	CCNNGG	1 cut(s)	774
BsaWI	WCCGGW	1 cut(s)	623
Bsc4I	CCNNNNNNNGG	2 cut(s)	650, 902
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	3 cut(s)	337, 596, 754
Bse21I	CCTNAGG	2 cut(s)	603, 687
Bse3DI	GCAATG	1 cut(s)	1014
BseBI	CCWGG	2 cut(s)	176, 866
BseDI	CCNNGG	1 cut(s)	774
BseLI	CCNNNNNNNGG	2 cut(s)	650, 902
BseMI	GCAATG	1 cut(s)	1014
BseMII	CTCAG	6 cut(s)	528, 594, 623, 701, 836, 1110
BseNI	ACTGG	3 cut(s)	337, 596, 754
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	8 cut(s)	139, 332, 400, 533, 641, 688, 691, 1085
BseYI	CCCAGC	1 cut(s)	973
BsgI	GTGCAG	2 cut(s)	540, 648
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	2 cut(s)	938, 1001
BsiSI	CCGG	2 cut(s)	383, 624
BslFI	GGGAC	3 cut(s)	503, 739, 935
BslI	CCNNNNNNNGG	2 cut(s)	650, 902
BsmFI	GGGAC	3 cut(s)	503, 739, 935
BsoBI	CYCGRG	2 cut(s)	938, 1001
Bsp1286I	GDGCHC	2 cut(s)	514, 897
Bsp143I	GATC	3 cut(s)	620, 718, 931
Bsp1720I	GCTNAGC	1 cut(s)	221
Bsp19I	CCATGG	1 cut(s)	774
BspACI	CCGC	3 cut(s)	74, 294, 386
BspCNI	CTCAG	6 cut(s)	529, 595, 622, 700, 837, 1109
BspLI	GGNNCC	1 cut(s)	622
BspMAI	CTGCAG	1 cut(s)	322
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	2 cut(s)	615, 628
BsrDI	GCAATG	1 cut(s)	1014
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	3 cut(s)	337, 596, 754
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	3 cut(s)	620, 718, 931
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	774
Bst2BI	CACGAG	1 cut(s)	507
Bst2UI	CCWGG	2 cut(s)	176, 866
Bst4CI	ACNGT	3 cut(s)	13, 502, 697
BstAPI	GCANNNNNTGC	2 cut(s)	518, 949
BstC8I	GCNNGC	2 cut(s)	318, 709
BstDSI	CCRYGG	1 cut(s)	774
BstKTI	GATC	3 cut(s)	623, 721, 934
BstMBI	GATC	3 cut(s)	620, 718, 931
BstMWI	GCNNNNNNNGC	7 cut(s)	254, 518, 587, 614, 638, 949, 1046
BstNI	CCWGG	2 cut(s)	176, 866
BstNSI	RCATGY	3 cut(s)	928, 959, 1053
BstSCI	CCNGG	2 cut(s)	174, 864
BstSFI	CTRYAG	1 cut(s)	318
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	8 cut(s)	139, 332, 400, 533, 641, 688, 691, 1085
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	2 cut(s)	620, 718
BstYI	RGATCY	2 cut(s)	620, 718
Bsu36I	CCTNAGG	2 cut(s)	603, 687
BtgI	CCRYGG	1 cut(s)	774
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	552
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	2 cut(s)	318, 709
CaiI	CAGNNNCTG	3 cut(s)	602, 635, 701
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	3 cut(s)	454, 656, 778
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	2 cut(s)	559, 599
CviAII	CATG	6 cut(s)	120, 775, 808, 925, 956, 1050
CviQI	GTAC	2 cut(s)	559, 599
DpnI	GATC	3 cut(s)	622, 720, 933
DpnII	GATC	3 cut(s)	620, 718, 931
DraIII	CACNNNGTG	1 cut(s)	518
Eco130I	CCWWGG	1 cut(s)	774
Eco24I	GRGCYC	1 cut(s)	897
Eco47I	GGWCC	3 cut(s)	454, 656, 778
Eco57I	CTGAAG	4 cut(s)	603, 785, 797, 863
Eco81I	CCTNAGG	2 cut(s)	603, 687
Eco88I	CYCGRG	2 cut(s)	938, 1001
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	174, 864
EcoT14I	CCWWGG	1 cut(s)	774
EcoT38I	GRGCYC	1 cut(s)	897
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	6 cut(s)	123, 778, 811, 928, 959, 1053
FaqI	GGGAC	3 cut(s)	503, 739, 935
FatI	CATG	6 cut(s)	119, 774, 807, 924, 955, 1049
Fnu4HI	GCNGC	9 cut(s)	128, 321, 387, 414, 522, 630, 702, 705, 1074
FriOI	GRGCYC	1 cut(s)	897
Fsp4HI	GCNGC	9 cut(s)	128, 321, 387, 414, 522, 630, 702, 705, 1074
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	9 cut(s)	128, 321, 387, 414, 522, 630, 702, 705, 1074
GsaI	CCCAGC	1 cut(s)	977
GsuI	CTGGAG	3 cut(s)	258, 672, 735
HapII	CCGG	2 cut(s)	383, 624
HgaI	GACGC	1 cut(s)	405
Hin1II	CATG	6 cut(s)	123, 778, 811, 928, 959, 1053
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	3 cut(s)	95, 139, 991
HpaII	CCGG	2 cut(s)	383, 624
HphI	GGTGA	4 cut(s)	88, 336, 351, 1112
Hpy166II	GTNNAC	2 cut(s)	420, 512
Hpy188I	TCNGA	5 cut(s)	61, 267, 612, 846, 910
Hpy188III	TCNNGA	9 cut(s)	237, 374, 443, 564, 651, 689, 714, 815, 857
Hpy8I	GTNNAC	2 cut(s)	420, 512
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	3 cut(s)	13, 502, 697
HpyCH4IV	ACGT	1 cut(s)	966
HpyCH4V	TGCA	7 cut(s)	320, 512, 521, 617, 629, 641, 647
HpyF10VI	GCNNNNNNNGC	7 cut(s)	254, 518, 587, 614, 638, 949, 1046
HpySE526I	ACGT	1 cut(s)	966
Hsp92II	CATG	6 cut(s)	123, 778, 811, 928, 959, 1053
Kzo9I	GATC	3 cut(s)	620, 718, 931
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	8 cut(s)	139, 332, 400, 533, 641, 688, 691, 1085
LweI	GCATC	1 cut(s)	656
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	966
MaeIII	GTNAC	5 cut(s)	190, 502, 967, 1052, 1100
MalI	GATC	3 cut(s)	622, 720, 933
MboI	GATC	3 cut(s)	620, 718, 931
MboII	GAAGA	9 cut(s)	91, 94, 104, 264, 297, 333, 791, 869, 1076
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	2 cut(s)	620, 718
MhlI	GDGCHC	2 cut(s)	514, 897
MluCI	AATT	9 cut(s)	42, 112, 131, 567, 734, 764, 795, 852, 1067
MmeI	TCCRAC	3 cut(s)	481, 784, 810
MroXI	GAANNNNTTC	2 cut(s)	204, 990
MseI	TTAA	2 cut(s)	15, 963
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	2 cut(s)	383, 624
MspR9I	CCNGG	2 cut(s)	176, 866
MunI	CAATTG	1 cut(s)	131
MvaI	CCWGG	2 cut(s)	176, 866
MwoI	GCNNNNNNNGC	7 cut(s)	254, 518, 587, 614, 638, 949, 1046
NcoI	CCATGG	1 cut(s)	774
NdeII	GATC	3 cut(s)	620, 718, 931
NlaIII	CATG	6 cut(s)	123, 778, 811, 928, 959, 1053
NlaIV	GGNNCC	1 cut(s)	622
NmuCI	GTSAC	2 cut(s)	1052, 1100
NspI	RCATGY	3 cut(s)	928, 959, 1053
PaeR7I	CTCGAG	1 cut(s)	1001
PaqCI	CACCTGC	1 cut(s)	652
PciI	ACATGT	1 cut(s)	924
PcsI	WCGNNNNNNNCGW	2 cut(s)	514, 936
PdmI	GAANNNNTTC	2 cut(s)	204, 990
PfeI	GAWTC	3 cut(s)	95, 139, 991
PkrI	GCNGC	9 cut(s)	129, 322, 388, 415, 523, 631, 703, 706, 1075
PpuMI	RGGWCCY	1 cut(s)	656
PscI	ACATGT	1 cut(s)	924
PsiI	TTATAA	1 cut(s)	528
Psp1406I	AACGTT	1 cut(s)	966
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	2 cut(s)	174, 864
PspFI	CCCAGC	1 cut(s)	973
PspGI	CCWGG	2 cut(s)	174, 864
PspN4I	GGNNCC	1 cut(s)	622
PspPI	GGNCC	3 cut(s)	454, 656, 778
PspPPI	RGGWCCY	1 cut(s)	656
PspXI	VCTCGAGB	1 cut(s)	1001
PstI	CTGCAG	1 cut(s)	322
PstNI	CAGNNNCTG	3 cut(s)	602, 635, 701
PsuI	RGATCY	2 cut(s)	620, 718
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	2 cut(s)	560, 600
RsaNI	GTAC	2 cut(s)	559, 599
SaqAI	TTAA	2 cut(s)	15, 963
SatI	GCNGC	9 cut(s)	128, 321, 387, 414, 522, 630, 702, 705, 1074
Sau3AI	GATC	3 cut(s)	620, 718, 931
Sau96I	GGNCC	3 cut(s)	454, 656, 778
ScrFI	CCNGG	2 cut(s)	176, 866
SduI	GDGCHC	2 cut(s)	514, 897
SfaNI	GCATC	1 cut(s)	656
SfcI	CTRYAG	1 cut(s)	318
Sfr274I	CTCGAG	1 cut(s)	1001
SinI	GGWCC	3 cut(s)	454, 656, 778
SlaI	CTCGAG	1 cut(s)	1001
SmlI	CTYRAG	4 cut(s)	23, 372, 443, 1001
SmoI	CTYRAG	4 cut(s)	23, 372, 443, 1001
Sse9I	AATT	9 cut(s)	42, 112, 131, 567, 734, 764, 795, 852, 1067
SsiI	CCGC	3 cut(s)	74, 294, 386
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	174, 864
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	3 cut(s)	13, 502, 697
TaiI	ACGT	1 cut(s)	969
TaqI	TCGA	3 cut(s)	308, 930, 1002
TaqII	GACCGA	1 cut(s)	1071
TasI	AATT	9 cut(s)	42, 112, 131, 567, 734, 764, 795, 852, 1067
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	3 cut(s)	95, 139, 991
Tru1I	TTAA	2 cut(s)	15, 963
Tru9I	TTAA	2 cut(s)	15, 963
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	2 cut(s)	1052, 1100
TseI	GCWGC	8 cut(s)	127, 320, 413, 521, 629, 701, 704, 1073
Tsp45I	GTSAC	2 cut(s)	1052, 1100
TspDTI	ATGAA	3 cut(s)	17, 180, 1077
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	552
VneI	GTGCAC	1 cut(s)	510
VpaK11BI	GGWCC	3 cut(s)	454, 656, 778
XapI	RAATTY	3 cut(s)	567, 734, 795
XceI	RCATGY	3 cut(s)	928, 959, 1053
XhoI	CTCGAG	1 cut(s)	1001
XmnI	GAANNNNTTC	2 cut(s)	204, 990
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.