Rorug02G0476100

DNA repair protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
60753457 .. 60755765
2309 bp
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UTR
Exon/CDS
Intron
Rorug02G0476100.1

Sequence Viewer

Length: 1608 bp
ATGGTCCTCCCAATGGTACTTCTCAAGCTCACAGACTGGGTGTGGTACCAGCTGTTAGCAAATTCATGTCACAGAGCAGCAAGGAAAGTCAGAAACTATGGCTCTCCCAAGCCTCACCAATTACCTCAACCTCCTTCTTTCCCTAATATTACCAAGTGTGATTTAAATGGTAGAAAGTCCCACACACTTGTTTGTGACATTTTTGGAGGCCTTTTGAGATCAGACTCTGTATTTCCTTACTTCATGTTGGTTGCTTTTGAAGGTGGTAGCATTATTAGAGCCTTTCTATTGTTGCTGTCATGCTCTTTTTTGTGGGTTTTGGACTATGAACTCCAATTAAGAGTCATGATTTTCATAACCTTTTGTGGGCTTAAGATTAAGCACATGGAGAGTGTTGGAAGAGCTGTCTTACCCAAGTTTTATCTTGAAAATCTTAATCTTCATGCCTATGAGGCTTTAGCTTCAACTGGGTCTAAGGTGGTTTTTAGTAGTGTCCCTAGAGTCATGGTGGAAGGGTTCCTTCAGGAGTATTTGGATGTTGATGATGTTAAGGGGACTGAGTTGCTCACTTCTGGGCAATACTTCACCGGTATGTTGTCTAAATCTGGTTTGCTTATGAAGCACAGAGCTCTAAAGGAACATTTTGGTGACAGAAAACCGGATATTGGACTAGGAACTTCAAGCCTCCATGATAATCTCTTCGTCTCTCTTTGCAAGGAAGCTTATGTAGTGAACAAGGAAGACAGCAAGAGCAATTCAAGTACTTCAGTGTTGCCAAGGCACAGATACCCCAAGCCCTTAATATTCCATGATGGAAGGCTAGCTTTCTTGCCTACTCCATTAGCAACTCTCTCCATGTTCTTGTGGATCCCCATTGGAATAGTCATAGCCATATTCAGAATCTCAGTGGGTATTTTCCTCCCCTTCAAAATTGCACTCTTCTTAGCCACTTGCACCGGTCTAAATCTATCTGTCAAAGGTTTAGACACTTCAACAAAATCAGACCATGAAAATAGAGGAGTCCTCTATGTTTGTACCCACAGAACACTTCTAGACCCAGTTCTCCTCAGCACAGCTCTTGCCAAGCCCTTGACAGCTGTCACATACAGCCTAAGCAAAATGTCTGAGGTCATAGCCCCAATTAGGACAGTGAGGTTAACAAGGGACAGAAAAAAAGATGGAGAAACAATGAACAAGTTGCTTAGTGAAGGTGACTTGGTGGTGTGTCCTGAGGGTACAACATGTAGAGAGCCCTATCTGTTGAGGTTTAGTTCACTGTTTGCTGAATTGGCTGATGAGATTGTGCCTGTGGCTGTCAACACAAAGGTGAGTATGTTCTATGGGACTACAGCCAGCGGGCTCAAATGTTTGGATCCTATTTTCTTCATGATGAACCCTAGACCGGTGTATTATGTTGAAATATTAGGCAAGTTACCTAAAGAGCTGACTTGTGCTGGTGGAAAATCTAGCTGTGAAGTTGCTAATTATATACAGAGGAAGTTGGGTGATGCTTTGGGGTTTGAGTGTACCACTCTTACAAGGAAGGACAAGTACTTGATGCTGGCTGGGAATGAAGGAATAGTCAGTAATAGTAAGAGGAAGAATTAG

Protein Analysis

535

Amino Acids

59.69

Weight (kDa)

9.15

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_RAM2_N PF23270 62 - 244 2.6e-65 Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD PF12710 64 - 225 3.2e-09 haloacid dehalogenase-like hydrolase
Acyltransferase PF01553 333 - 438 4.9e-09 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 45
AciI CCGC 1 cut(s) 1356
AclWI GGATC 4 cut(s) 862, 875, 1367, 1380
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 2 cut(s) 506, 750
AfaI GTAC 7 cut(s) 18, 47, 763, 1036, 1237, 1528, 1553
AfiI CCNNNNNNNGG 5 cut(s) 13, 366, 665, 1143, 1402
AflII CTTAAG 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 1241
AgeI ACCGGT 3 cut(s) 587, 956, 1402
AgsI TTSAA 8 cut(s) 260, 428, 465, 681, 759, 928, 993, 1418
AleI CACNNNNGTG 1 cut(s) 1325
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 1 cut(s) 709
AlwI GGATC 4 cut(s) 862, 875, 1367, 1380
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 61
AsiGI ACCGGT 3 cut(s) 587, 956, 1402
Asp718I GGTACC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 6 cut(s) 107, 577, 659, 1223, 1339, 1517
AsuNHI GCTAGC 1 cut(s) 820
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 1230
BamHI GGATCC 2 cut(s) 867, 1372
BanI GGYRCC 1 cut(s) 45
BanII GRGCYC 3 cut(s) 631, 1254, 1362
BarI GAAGNNNNNNTAC 2 cut(s) 1535, 1567
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 631
BbvCI CCTCAGC 1 cut(s) 1067
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 806, 1172
BcoDI GTCTC 1 cut(s) 709
BfaI CTAG 6 cut(s) 498, 671, 821, 1052, 1398, 1467
BfmI CTRYAG 1 cut(s) 1347
BfrI CTTAAG 1 cut(s) 371
BglI GCCNNNNNGGC 1 cut(s) 452
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmcAI AGTACT 2 cut(s) 763, 1553
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 4 cut(s) 47, 518, 869, 1374
BmrI ACTGGG 3 cut(s) 46, 477, 1052
BmsI GCATC 2 cut(s) 1498, 1548
BmtI GCTAGC 1 cut(s) 824
BmuI ACTGGG 3 cut(s) 46, 477, 1052
BoxI GACNNNNGTC 1 cut(s) 1097
BpiI GAAGAC 1 cut(s) 747
BplI GAGNNNNNCTC 2 cut(s) 1008, 1040
Bpu10I CCTNAGC 2 cut(s) 1067, 1112
BpuEI CTTGAG 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 776
BsaWI WCCGGW 4 cut(s) 587, 658, 956, 1402
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 366, 665, 1143, 1402
Bse118I RCCGGY 3 cut(s) 587, 956, 1402
Bse1I ACTGG 3 cut(s) 41, 472, 1058
Bse21I CCTNAGG 1 cut(s) 1230
BseDI CCNNGG 1 cut(s) 776
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 5 cut(s) 13, 366, 665, 1143, 1402
BseMII CTCAG 5 cut(s) 549, 918, 1081, 1116, 1221
BseNI ACTGG 3 cut(s) 41, 472, 1058
BseRI GAGGAG 2 cut(s) 1032, 1055
BseXI GCAGC 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 1565
BshFI GGCC 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 45
BshTI ACCGGT 3 cut(s) 587, 956, 1402
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 4 cut(s) 588, 659, 957, 1403
BslFI GGGAC 5 cut(s) 163, 479, 568, 1178, 1357
BslI CCNNNNNNNGG 5 cut(s) 13, 366, 665, 1143, 1402
BsmAI GTCTC 1 cut(s) 709
BsmBI CGTCTC 1 cut(s) 709
BsmFI GGGAC 5 cut(s) 163, 479, 568, 1178, 1357
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 3 cut(s) 631, 1254, 1362
Bsp143I GATC 3 cut(s) 218, 867, 1372
BspACI CCGC 1 cut(s) 1356
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 5 cut(s) 550, 917, 1080, 1117, 1222
BspHI TCATGA 2 cut(s) 345, 1386
BspLI GGNNCC 4 cut(s) 47, 518, 869, 1374
BspOI GCTAGC 1 cut(s) 824
BspPI GGATC 4 cut(s) 862, 875, 1367, 1380
BspQI GCTCTTC 1 cut(s) 394
BspT107I GGYRCC 1 cut(s) 45
BspTI CTTAAG 1 cut(s) 371
BsrFI RCCGGY 3 cut(s) 587, 956, 1402
BsrI ACTGG 3 cut(s) 41, 472, 1058
BssAI RCCGGY 3 cut(s) 587, 956, 1402
BssECI CCNNGG 1 cut(s) 776
BssMI GATC 3 cut(s) 218, 867, 1372
BssT1I CCWWGG 1 cut(s) 776
Bst4CI ACNGT 2 cut(s) 1150, 1278
Bst6I CTCTTC 3 cut(s) 394, 704, 944
BstAFI CTTAAG 1 cut(s) 371
BstC8I GCNNGC 4 cut(s) 822, 1354, 1358, 1563
BstDEI CTNAG 9 cut(s) 474, 558, 904, 943, 1067, 1112, 1125, 1202, 1230
BstF5I GGATG 1 cut(s) 541
BstKTI GATC 3 cut(s) 221, 870, 1375
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 3 cut(s) 218, 867, 1372
BstMWI GCNNNNNNNGC 3 cut(s) 452, 619, 1289
BstNSI RCATGY 1 cut(s) 1245
BstPAI GACNNNNGTC 1 cut(s) 1097
BstSFI CTRYAG 1 cut(s) 1347
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 747
BstX2I RGATCY 2 cut(s) 867, 1372
BstYI RGATCY 2 cut(s) 867, 1372
Bsu36I CCTNAGG 1 cut(s) 1230
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 1 cut(s) 541
BtsIMutI CAGTG 4 cut(s) 774, 912, 1155, 1274
Cac8I GCNNGC 4 cut(s) 822, 1354, 1358, 1563
CaiI CAGNNNCTG 1 cut(s) 227
CciI TCATGA 2 cut(s) 345, 1386
Cfr10I RCCGGY 3 cut(s) 587, 956, 1402
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 7 cut(s) 17, 46, 762, 1035, 1236, 1527, 1552
CspAI ACCGGT 3 cut(s) 587, 956, 1402
CviQI GTAC 7 cut(s) 17, 46, 762, 1035, 1236, 1527, 1552
DdeI CTNAG 9 cut(s) 474, 558, 904, 943, 1067, 1112, 1125, 1202, 1230
DpnI GATC 3 cut(s) 220, 869, 1374
DpnII GATC 3 cut(s) 218, 867, 1372
DraI TTTAAA 1 cut(s) 165
Eam1104I CTCTTC 3 cut(s) 394, 704, 944
EarI CTCTTC 3 cut(s) 394, 704, 944
Ecl136II GAGCTC 1 cut(s) 629
Eco130I CCWWGG 1 cut(s) 776
Eco147I AGGCCT 1 cut(s) 210
Eco24I GRGCYC 3 cut(s) 631, 1254, 1362
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 629
Eco57I CTGAAG 2 cut(s) 506, 750
Eco81I CCTNAGG 1 cut(s) 1230
EcoICRI GAGCTC 1 cut(s) 629
EcoT14I CCWWGG 1 cut(s) 776
EcoT38I GRGCYC 3 cut(s) 631, 1254, 1362
ErhI CCWWGG 1 cut(s) 776
Esp3I CGTCTC 1 cut(s) 709
FalI AAGNNNNNCTT 4 cut(s) 504, 536, 808, 840
FaqI GGGAC 5 cut(s) 163, 479, 568, 1178, 1357
FauI CCCGC 1 cut(s) 1349
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 548
FriOI GRGCYC 3 cut(s) 631, 1254, 1362
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 6 cut(s) 498, 671, 821, 1052, 1398, 1467
GluI GCNGC 1 cut(s) 78
GsaI CCCAGC 1 cut(s) 1569
HaeIII GGCC 1 cut(s) 210
HapII CCGG 4 cut(s) 588, 659, 957, 1403
HincII GTYRAC 2 cut(s) 1158, 1318
HindII GTYRAC 2 cut(s) 1158, 1318
HindIII AAGCTT 1 cut(s) 720
HinfI GANTC 5 cut(s) 224, 342, 501, 900, 1020
HpaI GTTAAC 1 cut(s) 1158
HpaII CCGG 4 cut(s) 588, 659, 957, 1403
HphI GGTGA 6 cut(s) 107, 577, 659, 1223, 1339, 1517
Hpy166II GTNNAC 5 cut(s) 733, 1158, 1274, 1318, 1527
Hpy188I TCNGA 5 cut(s) 92, 223, 899, 1003, 1126
Hpy188III TCNNGA 6 cut(s) 346, 425, 524, 1052, 1229, 1387
Hpy8I GTNNAC 5 cut(s) 733, 1158, 1274, 1318, 1527
HpyAV CCTTC 9 cut(s) 144, 254, 506, 530, 810, 934, 1202, 1537, 1568
HpyCH4III ACNGT 2 cut(s) 1150, 1278
HpyCH4V TGCA 3 cut(s) 714, 935, 954
HpyF10VI GCNNNNNNNGC 3 cut(s) 452, 619, 1289
HpyF3I CTNAG 9 cut(s) 474, 558, 904, 943, 1067, 1112, 1125, 1202, 1230
KpnI GGTACC 1 cut(s) 49
KspAI GTTAAC 1 cut(s) 1158
Kzo9I GATC 3 cut(s) 218, 867, 1372
LguI GCTCTTC 1 cut(s) 394
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 2 cut(s) 1498, 1548
MaeI CTAG 6 cut(s) 498, 671, 821, 1052, 1398, 1467
MaeIII GTNAC 6 cut(s) 68, 194, 647, 1099, 1211, 1431
MalI GATC 3 cut(s) 220, 869, 1374
MboI GATC 3 cut(s) 218, 867, 1372
MboII GAAGA 6 cut(s) 411, 431, 691, 752, 931, 1375
MflI RGATCY 2 cut(s) 867, 1372
MhlI GDGCHC 3 cut(s) 631, 1254, 1362
MluCI AATT 9 cut(s) 61, 119, 335, 754, 930, 1140, 1286, 1483, 1603
MlyI GAGTC 4 cut(s) 218, 351, 510, 1029
MmeI TCCRAC 1 cut(s) 376
MseI TTAA 8 cut(s) 164, 338, 372, 378, 435, 549, 800, 1157
MslI CAYNNNNRTG 4 cut(s) 447, 590, 645, 1325
MspA1I CMGCKG 3 cut(s) 52, 1097, 1356
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 4 cut(s) 588, 659, 957, 1403
MwoI GCNNNNNNNGC 3 cut(s) 452, 619, 1289
NdeII GATC 3 cut(s) 218, 867, 1372
NheI GCTAGC 1 cut(s) 820
NlaIV GGNNCC 4 cut(s) 47, 518, 869, 1374
NmuCI GTSAC 5 cut(s) 68, 194, 647, 1099, 1211
NspI RCATGY 1 cut(s) 1245
OliI CACNNNNGTG 1 cut(s) 1325
PagI TCATGA 2 cut(s) 345, 1386
PceI AGGCCT 1 cut(s) 210
PciI ACATGT 1 cut(s) 1241
PciSI GCTCTTC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 900
PinAI ACCGGT 3 cut(s) 587, 956, 1402
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 4 cut(s) 218, 350, 509, 1028
PpsI GAGTC 4 cut(s) 218, 350, 509, 1028
PscI ACATGT 1 cut(s) 1241
PshAI GACNNNNGTC 1 cut(s) 1097
Psp124BI GAGCTC 1 cut(s) 631
PspFI CCCAGC 1 cut(s) 1565
PspN4I GGNNCC 4 cut(s) 47, 518, 869, 1374
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 2 cut(s) 867, 1372
PvuII CAGCTG 2 cut(s) 52, 1097
RsaI GTAC 7 cut(s) 18, 47, 763, 1036, 1237, 1528, 1553
RsaNI GTAC 7 cut(s) 17, 46, 762, 1035, 1236, 1527, 1552
RseI CAYNNNNRTG 4 cut(s) 447, 590, 645, 1325
SacI GAGCTC 1 cut(s) 631
SapI GCTCTTC 1 cut(s) 394
SaqAI TTAA 8 cut(s) 164, 338, 372, 378, 435, 549, 800, 1157
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 3 cut(s) 218, 867, 1372
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 2 cut(s) 763, 1553
SchI GAGTC 4 cut(s) 218, 351, 510, 1029
SduI GDGCHC 3 cut(s) 631, 1254, 1362
SfaNI GCATC 2 cut(s) 1498, 1548
SfcI CTRYAG 1 cut(s) 1347
SinI GGWCC 1 cut(s) 4
SmiI ATTTAAAT 1 cut(s) 165
SmiMI CAYNNNNRTG 4 cut(s) 447, 590, 645, 1325
SmlI CTYRAG 2 cut(s) 23, 371
SmoI CTYRAG 2 cut(s) 23, 371
Sse9I AATT 9 cut(s) 61, 119, 335, 754, 930, 1140, 1286, 1483, 1603
SseBI AGGCCT 1 cut(s) 210
SsiI CCGC 1 cut(s) 1356
SspI AATATT 3 cut(s) 148, 804, 1422
SspMI CTAG 6 cut(s) 498, 671, 821, 1052, 1398, 1467
SstI GAGCTC 1 cut(s) 631
StuI AGGCCT 1 cut(s) 210
StyI CCWWGG 1 cut(s) 776
SwaI ATTTAAAT 1 cut(s) 165
TaaI ACNGT 2 cut(s) 1150, 1278
TasI AATT 9 cut(s) 61, 119, 335, 754, 930, 1140, 1286, 1483, 1603
TatI WGTACW 2 cut(s) 761, 1551
TfiI GAWTC 1 cut(s) 900
Tru1I TTAA 8 cut(s) 164, 338, 372, 378, 435, 549, 800, 1157
Tru9I TTAA 8 cut(s) 164, 338, 372, 378, 435, 549, 800, 1157
TscAI CASTG 4 cut(s) 774, 912, 1155, 1281
TseFI GTSAC 5 cut(s) 68, 194, 647, 1099, 1211
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 5 cut(s) 68, 194, 647, 1099, 1211
TspRI CASTG 4 cut(s) 774, 912, 1155, 1281
Vha464I CTTAAG 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 61
XbaI TCTAGA 1 cut(s) 1051
XceI RCATGY 1 cut(s) 1245
XspI CTAG 6 cut(s) 498, 671, 821, 1052, 1398, 1467
ZrmI AGTACT 2 cut(s) 763, 1553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.