Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

49582004 .. 49599441

Gene Structure 17438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG379700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAACTTTTTCATTGGCATATGTGGGTTTTCTAGTTCGGAATTGGAAGAAGCTATTGTGGGTATATTGATTCCAAGCTGTTGGGTTAAAGGCATTCTTCTTCAGCAAAACATTCAAGCCATTGTTGCTATCGTTTTGTTCACGAACCTAATGATGTTAACTCTCTTGTGTTTCAATTGCAATGTGCATACTGATACCTATGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAATCTTGAGCAGACTATTCAACAGATAATGGAGATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCACTTCGAGCAGCTTTTAACAACCCAGAGCGAGCAGTGGACTACTTGTACTCTAGTATTCCAGAAACAGCGGAAGTTGCAGTGCCTGTGGCTCATTTCCCTGTAAGTCAGGCAACCGAAACAGGCATAGCCAATGCTCCACCTATCTCCGGAGCACCTAATTCAGGTCCCCTGAATATGTTTCCGCAGGTAATTGGAATTCTCCAGGAAGCACTGTCCGGTACTGGTGCTGGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCAGTTCCAAACGTTGCGCTCAATGTTACAAGCCAACCCACAAATTTTACAACCCATGCTGCAGGAACTTGGAAAGCAAAACCCACAGCTTTTAAGATTAATTCAGGAGCACCATGTCGAGTTCCTTCAGTTAATAAATGAACCTCTTGAGGGTTCTGAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

246

Amino Acids

26.73

Weight (kDa)

4.67

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA	PF00627	81 - 118	2.3e-12	UBA/TS-N domain
XPC-binding	PF09280	185 - 240	2e-21	XPC-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AccIII	TCCGGA	1 cut(s)	455
AciI	CCGC	2 cut(s)	377, 491
AclI	AACGTT	1 cut(s)	587
AclWI	GGATC	2 cut(s)	543, 556
AcsI	RAATTY	3 cut(s)	217, 504, 618
AcuI	CTGAAG	2 cut(s)	86, 686
AcvI	CACGTG	1 cut(s)	305
AfaI	GTAC	2 cut(s)	356, 529
AfiI	CCNNNNNNNGG	3 cut(s)	455, 470, 725
AflIII	ACRYGT	1 cut(s)	302
AgsI	TTSAA	3 cut(s)	116, 175, 254
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	5 cut(s)	53, 78, 209, 320, 664
AluI	AGCT	5 cut(s)	53, 78, 209, 320, 664
Alw21I	GWGCWC	4 cut(s)	310, 463, 544, 687
Alw44I	GTGCAC	2 cut(s)	306, 540
AlwI	GGATC	2 cut(s)	543, 556
AlwNI	CAGNNNCTG	1 cut(s)	392
Aor13HI	TCCGGA	1 cut(s)	455
ApaLI	GTGCAC	2 cut(s)	306, 540
ApeKI	GCWGC	3 cut(s)	209, 317, 634
ApoI	RAATTY	3 cut(s)	217, 504, 618
AseI	ATTAAT	1 cut(s)	674
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	594
AspS9I	GGNCC	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	473
BaeGI	GKGCMC	2 cut(s)	310, 544
BamHI	GGATCC	1 cut(s)	548
BbrPI	CACGTG	1 cut(s)	305
Bbv12I	GWGCWC	4 cut(s)	310, 463, 544, 687
BbvI	GCAGC	3 cut(s)	196, 329, 621
BccI	CCATC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	512
BfaI	CTAG	2 cut(s)	33, 360
BfmI	CTRYAG	1 cut(s)	635
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	3 cut(s)	210, 318, 635
BlsI	GCNGC	3 cut(s)	211, 319, 636
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	473
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	2 cut(s)	475, 550
BmrFI	CCNGG	1 cut(s)	512
BpmI	CTGGAG	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	305
BsaWI	WCCGGW	2 cut(s)	455, 524
Bsc4I	CCNNNNNNNGG	3 cut(s)	455, 470, 725
Bse1I	ACTGG	1 cut(s)	535
Bse3DI	GCAATG	1 cut(s)	187
BseAI	TCCGGA	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	512
BseLI	CCNNNNNNNGG	3 cut(s)	455, 470, 725
BseMI	GCAATG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	535
BseSI	GKGCMC	2 cut(s)	310, 544
BseXI	GCAGC	3 cut(s)	196, 329, 621
BsiHKAI	GWGCWC	4 cut(s)	310, 463, 544, 687
BsiSI	CCGG	2 cut(s)	456, 525
BslFI	GGGAC	2 cut(s)	299, 459
BslI	CCNNNNNNNGG	3 cut(s)	455, 470, 725
BsmFI	GGGAC	2 cut(s)	299, 459
BsmI	GAATGC	1 cut(s)	93
Bsp1286I	GDGCHC	4 cut(s)	310, 463, 544, 687
Bsp13I	TCCGGA	1 cut(s)	455
Bsp143I	GATC	1 cut(s)	548
BspACI	CCGC	2 cut(s)	377, 491
BspEI	TCCGGA	1 cut(s)	455
BspLI	GGNNCC	2 cut(s)	475, 550
BspMAI	CTGCAG	1 cut(s)	639
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	543, 556
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	535
BssMI	GATC	1 cut(s)	548
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	298, 522
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	563
BstENI	CCTNNNNNAGG	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	594
BstKTI	GATC	1 cut(s)	551
BstMBI	GATC	1 cut(s)	548
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 314, 383
BstNI	CCWGG	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	635
BstSLI	GKGCMC	2 cut(s)	310, 544
BstV1I	GCAGC	3 cut(s)	196, 329, 621
BstX2I	RGATCY	1 cut(s)	548
BstXI	CCANNNNNNTGG	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	548
BtsI	GCAGTG	2 cut(s)	348, 393
BtsIMutI	CAGTG	3 cut(s)	348, 393, 518
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	339
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	1 cut(s)	594
Cfr13I	GGNCC	1 cut(s)	473
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	355, 528
CviAII	CATG	2 cut(s)	631, 689
CviJI	RGCY	9 cut(s)	53, 78, 119, 209, 320, 398, 437, 608, 664
CviKI_1	RGCY	9 cut(s)	53, 78, 119, 209, 320, 398, 437, 608, 664
CviQI	GTAC	2 cut(s)	355, 528
DdeI	CTNAG	1 cut(s)	563
DpnI	GATC	1 cut(s)	550
DpnII	GATC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	86, 686
Eco72I	CACGTG	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	468
EcoO109I	RGGNCCY	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	510
FaeI	CATG	2 cut(s)	634, 692
FaiI	YATR	9 cut(s)	20, 22, 65, 189, 201, 434, 485, 632, 690
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	2 cut(s)	299, 459
FatI	CATG	2 cut(s)	630, 688
FauNDI	CATATG	1 cut(s)	20
Fnu4HI	GCNGC	3 cut(s)	210, 318, 635
Fsp4HI	GCNGC	3 cut(s)	210, 318, 635
FspBI	CTAG	2 cut(s)	33, 360
GlaI	GCGC	1 cut(s)	593
GluI	GCNGC	3 cut(s)	210, 318, 635
GsuI	CTGGAG	1 cut(s)	494
HapII	CCGG	2 cut(s)	456, 525
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	1 cut(s)	594
Hin1II	CATG	2 cut(s)	634, 692
Hin6I	GCGC	1 cut(s)	592
HinP1I	GCGC	1 cut(s)	592
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	1 cut(s)	70
HpaI	GTTAAC	1 cut(s)	159
HpaII	CCGG	2 cut(s)	456, 525
Hpy166II	GTNNAC	5 cut(s)	141, 159, 308, 346, 542
Hpy188I	TCNGA	2 cut(s)	40, 733
Hpy188III	TCNNGA	6 cut(s)	142, 239, 368, 456, 680, 722
Hpy8I	GTNNAC	5 cut(s)	141, 159, 308, 346, 542
HpyAV	CCTTC	2 cut(s)	710, 728
HpyCH4III	ACNGT	2 cut(s)	298, 522
HpyCH4IV	ACGT	2 cut(s)	304, 587
HpyCH4V	TGCA	6 cut(s)	180, 187, 308, 386, 542, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 314, 383
HpyF3I	CTNAG	1 cut(s)	563
HpySE526I	ACGT	2 cut(s)	304, 587
Hsp92II	CATG	2 cut(s)	634, 692
HspAI	GCGC	1 cut(s)	592
Kpn2I	TCCGGA	1 cut(s)	455
KspAI	GTTAAC	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	548
LmnI	GCTCC	3 cut(s)	448, 458, 682
Lsp1109I	GCAGC	3 cut(s)	196, 329, 621
MaeI	CTAG	2 cut(s)	33, 360
MaeII	ACGT	2 cut(s)	304, 587
MaeIII	GTNAC	2 cut(s)	298, 600
MalI	GATC	1 cut(s)	550
MboI	GATC	1 cut(s)	548
MboII	GAAGA	3 cut(s)	59, 89, 92
MfeI	CAATTG	1 cut(s)	175
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	4 cut(s)	310, 463, 544, 687
MluCI	AATT	9 cut(s)	41, 175, 217, 280, 466, 498, 504, 618, 675
MnlI	CCTC	3 cut(s)	563, 718, 729
MroI	TCCGGA	1 cut(s)	455
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	6 cut(s)	87, 158, 324, 668, 674, 707
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	2 cut(s)	456, 525
MspR9I	CCNGG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	125, 314, 383
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	1 cut(s)	548
NlaIII	CATG	2 cut(s)	634, 692
NlaIV	GGNNCC	2 cut(s)	475, 550
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PctI	GAATGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	70
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	3 cut(s)	211, 319, 636
PmaCI	CACGTG	1 cut(s)	305
PmlI	CACGTG	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	305
PpuMI	RGGWCCY	1 cut(s)	473
PshBI	ATTAAT	1 cut(s)	674
Psp1406I	AACGTT	1 cut(s)	587
Psp5II	RGGWCCY	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	510
PspCI	CACGTG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	2 cut(s)	475, 550
PspPI	GGNCC	1 cut(s)	473
PspPPI	RGGWCCY	1 cut(s)	473
PstI	CTGCAG	1 cut(s)	639
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	548
RsaI	GTAC	2 cut(s)	356, 529
RsaNI	GTAC	2 cut(s)	355, 528
SaqAI	TTAA	6 cut(s)	87, 158, 324, 668, 674, 707
SatI	GCNGC	3 cut(s)	210, 318, 635
Sau3AI	GATC	1 cut(s)	548
Sau96I	GGNCC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	4 cut(s)	310, 463, 544, 687
SfcI	CTRYAG	1 cut(s)	635
SinI	GGWCC	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	239, 722
SmoI	CTYRAG	2 cut(s)	239, 722
Sse9I	AATT	9 cut(s)	41, 175, 217, 280, 466, 498, 504, 618, 675
SsiI	CCGC	2 cut(s)	377, 491
SspMI	CTAG	2 cut(s)	33, 360
StyD4I	CCNGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	298, 522
TaiI	ACGT	2 cut(s)	307, 590
TaqI	TCGA	3 cut(s)	313, 555, 693
TasI	AATT	9 cut(s)	41, 175, 217, 280, 466, 498, 504, 618, 675
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	6 cut(s)	87, 158, 324, 668, 674, 707
Tru9I	TTAA	6 cut(s)	87, 158, 324, 668, 674, 707
TscAI	CASTG	3 cut(s)	348, 393, 525
TseI	GCWGC	3 cut(s)	209, 317, 634
TspDTI	ATGAA	2 cut(s)	17, 729
TspRI	CASTG	3 cut(s)	348, 393, 525
VneI	GTGCAC	2 cut(s)	306, 540
VpaK11BI	GGWCC	1 cut(s)	473
VspI	ATTAAT	1 cut(s)	674
XagI	CCTNNNNNAGG	1 cut(s)	468
XapI	RAATTY	3 cut(s)	217, 504, 618
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	33, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.