Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

14614125 .. 14619275

Gene Structure 5151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g14830.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCTTAGCAAGAGTAAAACTTCAGGCTTAGCAGGGTCTTCTTCTGGTCAGCTTGCCTCTACAAATCCTTCTACAACTCCACCAACCACAGATTCTACAACTAGAACTGAAGCTCCCATACAAGCACCACCCTTACAGAGTACCACATCTGCTCCAGACACTGCTAGTGCGCATAGTGATACCTATAGACAAGCTGCATCAACTTTAGTTGCTGGCACTAATCTTGAGCAGACTATTCAACAAATAATGGATATGGGAGGTGGCAACTGGGACAGAGAAACAGTTACACGTGCCCTACGAGCAGCTTATAACAATCCAGAGCGAGCAGTGGACTACTTGTACTCTAGTATTCCAGAAACAACAGAAGTTGCAGTTCCTGTAGGAAATTTCCCTGCAAGTCAGGCAACTGAGACAGAGGCAGCCAATGCTGCTCCTGTCTCTGGAGCACCTAACTCTGCTCCTTTGAATATGTTTCCTCAGGTAAAACTCAGGAAACACTCTCTGGTGCTGGCGCTGGGGCACTTGGATCCCTCGACTTTCTTAGGAATAATCGGCAGTTCCAAGCACTGCGCTCAATGGTGCAAGCAAATCCACAAATTTTGCAGCCCATGCTGCAAGAGCTCGGAAAGCAAAACCCCCAGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

216

Amino Acids

22.61

Weight (kDa)

6.95

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
Acc16I	TGCGCA	1 cut(s)	171
AclWI	GGATC	2 cut(s)	521, 534
AcsI	RAATTY	2 cut(s)	385, 596
AcuI	CTGAAG	2 cut(s)	6, 129
AcvI	CACGTG	1 cut(s)	290
AfaI	GTAC	2 cut(s)	142, 341
AfiI	CCNNNNNNNGG	1 cut(s)	440
AflIII	ACRYGT	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	239, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AloI	GAACNNNNNNTCC	2 cut(s)	97, 129
AluBI	AGCT	6 cut(s)	52, 113, 194, 305, 621, 642
AluI	AGCT	6 cut(s)	52, 113, 194, 305, 621, 642
Alw21I	GWGCWC	2 cut(s)	448, 623
Alw26I	GTCTC	2 cut(s)	404, 442
AlwI	GGATC	2 cut(s)	521, 534
AlwNI	CAGNNNCTG	2 cut(s)	161, 377
ApeKI	GCWGC	6 cut(s)	194, 302, 419, 428, 603, 612
ApoI	RAATTY	2 cut(s)	385, 596
AspLEI	GCGC	3 cut(s)	172, 514, 572
AxyI	CCTNAGG	1 cut(s)	477
BaeGI	GKGCMC	2 cut(s)	295, 522
BamHI	GGATCC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	623
BarI	GAAGNNNNNNTAC	2 cut(s)	102, 134
BbrPI	CACGTG	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	448, 623
BbvI	GCAGC	6 cut(s)	181, 314, 415, 431, 599, 615
BcoDI	GTCTC	2 cut(s)	404, 442
BfaI	CTAG	3 cut(s)	102, 165, 345
BfmI	CTRYAG	2 cut(s)	184, 378
BfoI	RGCGCY	1 cut(s)	515
BisI	GCNGC	6 cut(s)	195, 303, 420, 429, 604, 613
BlpI	GCTNAGC	2 cut(s)	5, 28
BlsI	GCNGC	6 cut(s)	196, 304, 421, 430, 605, 614
BmiI	GGNNCC	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	138, 462
Bpu1102I	GCTNAGC	2 cut(s)	5, 28
BpuEI	CTTGAG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	290
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 136, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	272
Bse21I	CCTNAGG	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	3 cut(s)	399, 491, 502
BseNI	ACTGG	1 cut(s)	272
BseSI	GKGCMC	2 cut(s)	295, 522
BseXI	GCAGC	6 cut(s)	181, 314, 415, 431, 599, 615
BseYI	CCCAGC	2 cut(s)	514, 638
BsiHKAI	GWGCWC	2 cut(s)	448, 623
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	2 cut(s)	404, 442
BsmFI	GGGAC	1 cut(s)	284
Bsp1286I	GDGCHC	4 cut(s)	295, 448, 522, 623
Bsp143I	GATC	1 cut(s)	526
Bsp1720I	GCTNAGC	2 cut(s)	5, 28
BspCNI	CTCAG	3 cut(s)	400, 490, 501
BspLI	GGNNCC	1 cut(s)	528
BspPI	GGATC	2 cut(s)	521, 534
BsrI	ACTGG	1 cut(s)	272
BssMI	GATC	1 cut(s)	526
Bst4CI	ACNGT	1 cut(s)	283
BstAPI	GCANNNNNTGC	2 cut(s)	425, 609
BstBAI	YACGTR	1 cut(s)	290
BstC8I	GCNNGC	5 cut(s)	54, 214, 324, 510, 584
BstDEI	CTNAG	6 cut(s)	5, 28, 408, 477, 488, 541
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	3 cut(s)	172, 514, 572
BstKTI	GATC	1 cut(s)	529
BstMAI	GTCTC	2 cut(s)	404, 442
BstMBI	GATC	1 cut(s)	526
BstMWI	GCNNNNNNNGC	8 cut(s)	299, 401, 425, 428, 609, 612, 618, 627
BstSFI	CTRYAG	2 cut(s)	184, 378
BstSLI	GKGCMC	2 cut(s)	295, 522
BstV1I	GCAGC	6 cut(s)	181, 314, 415, 431, 599, 615
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
Bsu36I	CCTNAGG	1 cut(s)	477
BtsI	GCAGTG	3 cut(s)	159, 333, 565
BtsIMutI	CAGTG	3 cut(s)	159, 333, 565
Cac8I	GCNNGC	5 cut(s)	54, 214, 324, 510, 584
CaiI	CAGNNNCTG	2 cut(s)	161, 377
CfoI	GCGC	3 cut(s)	172, 514, 572
Csp6I	GTAC	2 cut(s)	141, 340
CspCI	CAANNNNNGTGG	2 cut(s)	581, 616
CviAII	CATG	1 cut(s)	609
CviJI	RGCY	9 cut(s)	27, 52, 113, 194, 305, 422, 606, 621, 642
CviKI_1	RGCY	9 cut(s)	27, 52, 113, 194, 305, 422, 606, 621, 642
CviQI	GTAC	2 cut(s)	141, 340
DdeI	CTNAG	6 cut(s)	5, 28, 408, 477, 488, 541
DpnI	GATC	1 cut(s)	528
DpnII	GATC	1 cut(s)	526
Ecl136II	GAGCTC	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	621
Eco57I	CTGAAG	2 cut(s)	6, 129
Eco72I	CACGTG	1 cut(s)	290
Eco81I	CCTNAGG	1 cut(s)	477
EcoICRI	GAGCTC	1 cut(s)	621
EcoT38I	GRGCYC	1 cut(s)	623
FaeI	CATG	1 cut(s)	612
FaiI	YATR	7 cut(s)	119, 174, 186, 254, 309, 470, 610
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	1 cut(s)	608
Fnu4HI	GCNGC	6 cut(s)	195, 303, 420, 429, 604, 613
FriOI	GRGCYC	1 cut(s)	623
Fsp4HI	GCNGC	6 cut(s)	195, 303, 420, 429, 604, 613
FspAI	RTGCGCAY	1 cut(s)	171
FspBI	CTAG	3 cut(s)	102, 165, 345
FspI	TGCGCA	1 cut(s)	171
GlaI	GCGC	3 cut(s)	171, 513, 571
GluI	GCNGC	6 cut(s)	195, 303, 420, 429, 604, 613
GsaI	CCCAGC	2 cut(s)	518, 642
GsuI	CTGGAG	2 cut(s)	138, 462
HaeII	RGCGCY	1 cut(s)	515
HhaI	GCGC	3 cut(s)	172, 514, 572
Hin1II	CATG	1 cut(s)	612
Hin6I	GCGC	3 cut(s)	170, 512, 570
HinP1I	GCGC	3 cut(s)	170, 512, 570
HinfI	GANTC	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	1 cut(s)	625
Hpy188III	TCNNGA	6 cut(s)	155, 224, 317, 353, 441, 490
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	6 cut(s)	197, 371, 395, 582, 603, 615
HpyF10VI	GCNNNNNNNGC	8 cut(s)	299, 401, 425, 428, 609, 612, 618, 627
HpyF3I	CTNAG	6 cut(s)	5, 28, 408, 477, 488, 541
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	1 cut(s)	612
HspAI	GCGC	3 cut(s)	170, 512, 570
Kzo9I	GATC	1 cut(s)	526
LmnI	GCTCC	5 cut(s)	118, 157, 436, 443, 463
Lsp1109I	GCAGC	6 cut(s)	181, 314, 415, 431, 599, 615
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	3 cut(s)	102, 165, 345
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	528
MboI	GATC	1 cut(s)	526
MboII	GAAGA	2 cut(s)	30, 33
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	4 cut(s)	295, 448, 522, 623
MluCI	AATT	2 cut(s)	385, 596
MnlI	CCTC	5 cut(s)	67, 251, 409, 486, 541
MseI	TTAA	1 cut(s)	646
MwoI	GCNNNNNNNGC	8 cut(s)	299, 401, 425, 428, 609, 612, 618, 627
NdeII	GATC	1 cut(s)	526
NlaIII	CATG	1 cut(s)	612
NlaIV	GGNNCC	1 cut(s)	528
NsbI	TGCGCA	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	6 cut(s)	196, 304, 421, 430, 605, 614
PmaCI	CACGTG	1 cut(s)	290
PmlI	CACGTG	1 cut(s)	290
Ppu21I	YACGTR	1 cut(s)	290
PsiI	TTATAA	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	623
PspCI	CACGTG	1 cut(s)	290
PspFI	CCCAGC	2 cut(s)	514, 638
PspN4I	GGNNCC	1 cut(s)	528
PstNI	CAGNNNCTG	2 cut(s)	161, 377
PsuI	RGATCY	1 cut(s)	526
RsaI	GTAC	2 cut(s)	142, 341
RsaNI	GTAC	2 cut(s)	141, 340
SacI	GAGCTC	1 cut(s)	623
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	6 cut(s)	195, 303, 420, 429, 604, 613
Sau3AI	GATC	1 cut(s)	526
SduI	GDGCHC	4 cut(s)	295, 448, 522, 623
SfaNI	GCATC	1 cut(s)	206
SfcI	CTRYAG	2 cut(s)	184, 378
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	385, 596
SspMI	CTAG	3 cut(s)	102, 165, 345
SstI	GAGCTC	1 cut(s)	623
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	1 cut(s)	533
TasI	AATT	2 cut(s)	385, 596
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TscAI	CASTG	3 cut(s)	166, 333, 572
TseI	GCWGC	6 cut(s)	194, 302, 419, 428, 603, 612
TspRI	CASTG	3 cut(s)	166, 333, 572
XapI	RAATTY	2 cut(s)	385, 596
XspI	CTAG	3 cut(s)	102, 165, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.