Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

52711317 .. 52712881

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGATATGGGTGGTGGAAATTGGGACAGAGAAACGATTACACCCGAAACGGCGAAAGTTGCGGTTCACGTGACTCATTTCCCCGTAAGTCGTGCAACCGAAACAGGCATAACCAATGCTCCACCTATCTCCAGAGCAGCTAATTCAGGTCCCCTAAATATGTTTCCGCAGGAAGCACTTTGTCCGATCTTGGTCTTTGGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCAAAAAAGTGTTCATTGGGATTGGACATTCACCATTTTCAACTCTGCCATTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

97

Amino Acids

10.64

Weight (kDa)

5.69

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 167
AclWI	GGATC	2 cut(s)	204, 217
AcvI	CACGTG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw21I	GWGCWC	1 cut(s)	205
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	204, 217
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	209
BbrPI	CACGTG	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	292
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	151, 211
BpmI	CTGGAG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	205
BslFI	GGGAC	2 cut(s)	38, 135
BsmFI	GGGAC	2 cut(s)	38, 135
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	186, 209
BspACI	CCGC	2 cut(s)	62, 167
BspLI	GGNNCC	2 cut(s)	151, 211
BspPI	GGATC	2 cut(s)	204, 217
BssMI	GATC	2 cut(s)	186, 209
BstBAI	YACGTR	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	224
BstKTI	GATC	2 cut(s)	189, 212
BstMBI	GATC	2 cut(s)	186, 209
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	149
CviJI	RGCY	1 cut(s)	140
CviKI_1	RGCY	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	2 cut(s)	188, 211
DpnII	GATC	2 cut(s)	186, 209
Eco47I	GGWCC	1 cut(s)	149
Eco72I	CACGTG	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	149
FaiI	YATR	3 cut(s)	8, 110, 161
FaqI	GGGAC	2 cut(s)	38, 135
Fnu4HI	GCNGC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	292
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	115
HinfI	GANTC	1 cut(s)	73
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	67, 203
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	132
Hpy8I	GTNNAC	2 cut(s)	67, 203
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	95, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	186, 209
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	4 cut(s)	90, 132, 145, 155
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	292
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	188, 211
MboI	GATC	2 cut(s)	186, 209
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	2 cut(s)	19, 142
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	2 cut(s)	186, 209
NlaIV	GGNNCC	2 cut(s)	151, 211
NmuCI	GTSAC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	67
PmaCI	CACGTG	1 cut(s)	70
PmlI	CACGTG	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	67
Ppu21I	YACGTR	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	149
PspCI	CACGTG	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	151, 211
PspPI	GGNCC	1 cut(s)	149
PspPPI	RGGWCCY	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	209
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	186, 209
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	4 cut(s)	72, 127, 142, 151
SinI	GGWCC	1 cut(s)	149
Sse9I	AATT	2 cut(s)	19, 142
SsiI	CCGC	2 cut(s)	62, 167
SspMI	CTAG	1 cut(s)	292
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	216
TasI	AATT	2 cut(s)	19, 142
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	239
VneI	GTGCAC	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	149
XspI	CTAG	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.