Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

28380175 .. 28387907

Gene Structure 7733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1229800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAAGCTCACTGTAAAGACCCTCAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCCACTGACGCCGTTATGGCTGTGAAGAAGAACATTGAGGATGTACAAGGAAAAGATAATTACCCATGTGGACAGCAGTTACTGATTCATAATGGGAAGGTCTTGAAAGACGAAACTACGTTGGCTGACAATAAGGTCACGGAACACGGTTTTCTTGTTGTCATGCTTAGCAAGAGTAAAACTTCTGGCTTAACAGGGTCTTCTTATGGTCAGCCTGCCTCTACAAATCCTTCTACAACTCCACCAACCACAGATACTACAACCAGAACTGAAGCTCCAATACAAGCACCACCCTTACAGAGTACCACATCTGCTCCAGACACTGCTAGTGCGCATAGTGATACCTATGGTCAAGCTGCTTCAACTTTAGTTGCTGGCACTAATCTTGAGCAGACTATTCAACAAATAATGGATTTGGGAGGTGGCAACTGGGACAGAGAAACAGTTGCATGTGCCCTACGAGCAGCTTATAACAATCCAGAGCGAGCAGTGGACTACTTGTACTCTAGTATTCCAGAAACAACAGAAGTTGCAGTTCCTGTAGGAAATTTCCCTGCAAGTCAGGCAACTGAGACAGGGGCAACCAATGCTGCTCCTGTCTCTGGAGCACCTAACTCTGCTCCTTTGAATATGTTTCCTCAGGAAACACTCTCTGGTGCTGGCGCTGGGGCACTTGGATCCCTCGACTTCCTTAGGAATAATCGGCAGTTCCAAGCACTGCGCTCAATGGTGCAAGCAAATCCACAAATTTTGCAGCCCATGCTGCAGGAGCTCGGAAAGCAAAACCCCCAGCTTTTAAGATTAATTCAGGAGCACCATACTGAGTTCCTTCAGTTAATAAATGAACCGCTTGAGGGTTCTGAAGGTGGCATATTTGATCAGCCTGACGGTCCTGACCAAGATATGCCTCATGCCATCAACGTAACCCCTGCCGAGCAGGAGGCCATTGAACGTCTTGAGGCGATGGGATTTGACAGAGCGTTGGTCATTGAGGCTTTTCTGGCGTGCGATCGCAATGAGGAATTGGCAGCCAATTACCTATTGGAGAATGCTGGAGATTACGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

375

Amino Acids

40.18

Weight (kDa)

4.59

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	3 - 76	4.9e-14	Ubiquitin family
UBA	PF00627	148 - 185	4.5e-08	UBA/TS-N domain
XPC-binding	PF09280	246 - 301	1.7e-22	XPC-binding domain
UBA	PF00627	330 - 365	2.6e-11	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AasI	GACNNNNNNGTC	1 cut(s)	188
Acc16I	TGCGCA	1 cut(s)	387
AciI	CCGC	1 cut(s)	902
AclWI	GGATC	2 cut(s)	726, 739
AcsI	RAATTY	2 cut(s)	601, 801
AcuI	CTGAAG	3 cut(s)	345, 869, 936
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	3 cut(s)	99, 358, 557
AfiI	CCNNNNNNNGG	2 cut(s)	656, 908
AgsI	TTSAA	5 cut(s)	160, 417, 455, 682, 1004
AloI	GAACNNNNNNTCC	2 cut(s)	313, 345
AluBI	AGCT	6 cut(s)	7, 329, 410, 521, 826, 847
AluI	AGCT	6 cut(s)	7, 329, 410, 521, 826, 847
Alw21I	GWGCWC	3 cut(s)	664, 828, 870
Alw26I	GTCTC	2 cut(s)	620, 658
AlwI	GGATC	2 cut(s)	726, 739
AlwNI	CAGNNNCTG	3 cut(s)	136, 377, 593
AoxI	GGCC	1 cut(s)	996
ApeKI	GCWGC	7 cut(s)	30, 410, 518, 644, 808, 817, 1082
ApoI	RAATTY	2 cut(s)	601, 801
AseI	ATTAAT	1 cut(s)	857
AsiSI	GCGATCGC	1 cut(s)	1066
AspLEI	GCGC	3 cut(s)	388, 719, 777
AspS9I	GGNCC	1 cut(s)	944
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	944
AxyI	CCTNAGG	2 cut(s)	693, 746
BaeGI	GKGCMC	2 cut(s)	511, 727
BamHI	GGATCC	1 cut(s)	731
BanII	GRGCYC	1 cut(s)	828
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	3 cut(s)	664, 828, 870
BbvI	GCAGC	7 cut(s)	42, 397, 530, 631, 804, 820, 1094
BccI	CCATC	2 cut(s)	977, 1012
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BclI	TGATCA	1 cut(s)	931
BcoDI	GTCTC	2 cut(s)	620, 658
BfaI	CTAG	2 cut(s)	381, 561
BfmI	CTRYAG	2 cut(s)	594, 818
BfoI	RGCGCY	1 cut(s)	720
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	7 cut(s)	31, 411, 519, 645, 809, 818, 1083
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	7 cut(s)	32, 412, 520, 646, 810, 819, 1084
Bme18I	GGWCC	1 cut(s)	944
BmgT120I	GGNCC	1 cut(s)	944
BmiI	GGNNCC	1 cut(s)	733
BmrI	ACTGGG	1 cut(s)	493
BmuI	ACTGGG	1 cut(s)	493
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	2 cut(s)	354, 678
Bpu1102I	GCTNAGC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	3 cut(s)	461, 926, 1031
BsaHI	GRCGYC	1 cut(s)	63
BsaXI	ACNNNNNCTCC	4 cut(s)	313, 343, 352, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 908
Bse1I	ACTGG	1 cut(s)	488
Bse21I	CCTNAGG	2 cut(s)	693, 746
Bse3DI	GCAATG	1 cut(s)	1075
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	2 cut(s)	656, 908
BseMI	GCAATG	1 cut(s)	1075
BseMII	CTCAG	3 cut(s)	615, 707, 867
BseNI	ACTGG	1 cut(s)	488
BseSI	GKGCMC	2 cut(s)	511, 727
BseXI	GCAGC	7 cut(s)	42, 397, 530, 631, 804, 820, 1094
BseYI	CCCAGC	2 cut(s)	719, 843
Bsh1285I	CGRYCG	1 cut(s)	1066
BshFI	GGCC	1 cut(s)	998
BsiEI	CGRYCG	1 cut(s)	1066
BsiHKAI	GWGCWC	3 cut(s)	664, 828, 870
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	656, 908
BsmAI	GTCTC	2 cut(s)	620, 658
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	1108
BsnI	GGCC	1 cut(s)	998
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	5 cut(s)	511, 664, 727, 828, 870
Bsp1407I	TGTACA	1 cut(s)	97
Bsp143I	GATC	3 cut(s)	731, 931, 1063
Bsp1720I	GCTNAGC	1 cut(s)	221
BspACI	CCGC	1 cut(s)	902
BspANI	GGCC	1 cut(s)	998
BspCNI	CTCAG	3 cut(s)	616, 706, 868
BspLI	GGNNCC	1 cut(s)	733
BspMAI	CTGCAG	1 cut(s)	822
BspPI	GGATC	2 cut(s)	726, 739
BspT104I	TTCGAA	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	1075
BsrGI	TGTACA	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	488
BssMI	GATC	3 cut(s)	731, 931, 1063
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	4 cut(s)	13, 203, 499, 944
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	2 cut(s)	641, 814
BstAUI	TGTACA	1 cut(s)	97
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	6 cut(s)	270, 430, 540, 715, 789, 1060
BstDEI	CTNAG	5 cut(s)	221, 624, 693, 746, 876
BstF5I	GGATG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	720
BstHHI	GCGC	3 cut(s)	388, 719, 777
BstKTI	GATC	3 cut(s)	734, 934, 1066
BstMAI	GTCTC	2 cut(s)	620, 658
BstMBI	GATC	3 cut(s)	731, 931, 1063
BstMCI	CGRYCG	1 cut(s)	1066
BstMWI	GCNNNNNNNGC	9 cut(s)	71, 515, 617, 641, 814, 817, 823, 832, 1055
BstNSI	RCATGY	1 cut(s)	507
BstSFI	CTRYAG	2 cut(s)	594, 818
BstSLI	GKGCMC	2 cut(s)	511, 727
BstV1I	GCAGC	7 cut(s)	42, 397, 530, 631, 804, 820, 1094
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	731
Bsu36I	CCTNAGG	2 cut(s)	693, 746
BsuRI	GGCC	1 cut(s)	998
BtgZI	GCGATG	1 cut(s)	1031
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	3 cut(s)	375, 549, 770
BtsIMutI	CAGTG	5 cut(s)	9, 57, 375, 549, 770
Cac8I	GCNNGC	6 cut(s)	270, 430, 540, 715, 789, 1060
CaiI	CAGNNNCTG	3 cut(s)	136, 377, 593
CfoI	GCGC	3 cut(s)	388, 719, 777
Cfr13I	GGNCC	1 cut(s)	944
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	98, 357, 556
CspCI	CAANNNNNGTGG	2 cut(s)	786, 821
CviAII	CATG	5 cut(s)	120, 217, 504, 814, 965
CviQI	GTAC	3 cut(s)	98, 357, 556
DdeI	CTNAG	5 cut(s)	221, 624, 693, 746, 876
DpnI	GATC	3 cut(s)	733, 933, 1065
DpnII	GATC	3 cut(s)	731, 931, 1063
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Ecl136II	GAGCTC	1 cut(s)	826
Eco24I	GRGCYC	1 cut(s)	828
Eco47I	GGWCC	1 cut(s)	944
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	3 cut(s)	345, 869, 936
Eco81I	CCTNAGG	2 cut(s)	693, 746
EcoICRI	GAGCTC	1 cut(s)	826
EcoT38I	GRGCYC	1 cut(s)	828
FaeI	CATG	5 cut(s)	123, 220, 507, 817, 968
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	5 cut(s)	119, 216, 503, 813, 964
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	7 cut(s)	31, 411, 519, 645, 809, 818, 1083
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	7 cut(s)	31, 411, 519, 645, 809, 818, 1083
FspAI	RTGCGCAY	1 cut(s)	387
FspBI	CTAG	2 cut(s)	381, 561
FspI	TGCGCA	1 cut(s)	387
GlaI	GCGC	3 cut(s)	387, 718, 776
GluI	GCNGC	7 cut(s)	31, 411, 519, 645, 809, 818, 1083
GsaI	CCCAGC	2 cut(s)	723, 847
GsuI	CTGGAG	2 cut(s)	354, 678
HaeII	RGCGCY	1 cut(s)	720
HaeIII	GGCC	1 cut(s)	998
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	3 cut(s)	388, 719, 777
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	5 cut(s)	123, 220, 507, 817, 968
Hin6I	GCGC	3 cut(s)	386, 717, 775
HinP1I	GCGC	3 cut(s)	386, 717, 775
HinfI	GANTC	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	125, 547
Hpy188I	TCNGA	2 cut(s)	830, 916
Hpy8I	GTNNAC	2 cut(s)	125, 547
HpyAV	CCTTC	4 cut(s)	145, 294, 893, 911
HpyCH4III	ACNGT	4 cut(s)	13, 203, 499, 944
HpyCH4IV	ACGT	3 cut(s)	173, 975, 1006
HpyCH4V	TGCA	6 cut(s)	503, 587, 611, 787, 808, 820
HpyF10VI	GCNNNNNNNGC	9 cut(s)	71, 515, 617, 641, 814, 817, 823, 832, 1055
HpyF3I	CTNAG	5 cut(s)	221, 624, 693, 746, 876
HpySE526I	ACGT	3 cut(s)	173, 975, 1006
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	123, 220, 507, 817, 968
HspAI	GCGC	3 cut(s)	386, 717, 775
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	3 cut(s)	731, 931, 1063
LmnI	GCTCC	7 cut(s)	334, 373, 652, 659, 679, 823, 865
Lsp1109I	GCAGC	7 cut(s)	42, 397, 530, 631, 804, 820, 1094
MaeI	CTAG	2 cut(s)	381, 561
MaeII	ACGT	3 cut(s)	173, 975, 1006
MaeIII	GTNAC	3 cut(s)	132, 190, 976
MalI	GATC	3 cut(s)	733, 933, 1065
MboI	GATC	3 cut(s)	731, 931, 1063
MboII	GAAGA	3 cut(s)	91, 94, 246
MflI	RGATCY	1 cut(s)	731
MhlI	GDGCHC	5 cut(s)	511, 664, 727, 828, 870
MluCI	AATT	7 cut(s)	42, 112, 601, 801, 858, 1076, 1087
MseI	TTAA	4 cut(s)	245, 851, 857, 890
Mva1269I	GAATGC	1 cut(s)	1108
MwoI	GCNNNNNNNGC	9 cut(s)	71, 515, 617, 641, 814, 817, 823, 832, 1055
NdeII	GATC	3 cut(s)	731, 931, 1063
NlaIII	CATG	5 cut(s)	123, 220, 507, 817, 968
NlaIV	GGNNCC	1 cut(s)	733
NmeAIII	GCCGAG	1 cut(s)	1012
NmuCI	GTSAC	1 cut(s)	190
NsbI	TGCGCA	1 cut(s)	387
NspI	RCATGY	1 cut(s)	507
NspV	TTCGAA	1 cut(s)	39
PctI	GAATGC	1 cut(s)	1108
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	7 cut(s)	32, 412, 520, 646, 810, 819, 1084
Ple19I	CGATCG	1 cut(s)	1066
PshBI	ATTAAT	1 cut(s)	857
PsiI	TTATAA	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	828
PspFI	CCCAGC	2 cut(s)	719, 843
PspN4I	GGNNCC	1 cut(s)	733
PspPI	GGNCC	1 cut(s)	944
PstI	CTGCAG	1 cut(s)	822
PstNI	CAGNNNCTG	3 cut(s)	136, 377, 593
PsuI	RGATCY	1 cut(s)	731
PvuI	CGATCG	1 cut(s)	1066
RgaI	GCGATCGC	1 cut(s)	1066
RsaI	GTAC	3 cut(s)	99, 358, 557
RsaNI	GTAC	3 cut(s)	98, 357, 556
SacI	GAGCTC	1 cut(s)	828
SaqAI	TTAA	4 cut(s)	245, 851, 857, 890
SatI	GCNGC	7 cut(s)	31, 411, 519, 645, 809, 818, 1083
Sau3AI	GATC	3 cut(s)	731, 931, 1063
Sau96I	GGNCC	1 cut(s)	944
SduI	GDGCHC	5 cut(s)	511, 664, 727, 828, 870
SfaAI	GCGATCGC	1 cut(s)	1066
SfcI	CTRYAG	2 cut(s)	594, 818
SfuI	TTCGAA	1 cut(s)	39
SgfI	GCGATCGC	1 cut(s)	1066
SinI	GGWCC	1 cut(s)	944
SmlI	CTYRAG	3 cut(s)	440, 905, 1010
SmoI	CTYRAG	3 cut(s)	440, 905, 1010
Sse9I	AATT	7 cut(s)	42, 112, 601, 801, 858, 1076, 1087
SsiI	CCGC	1 cut(s)	902
SspMI	CTAG	2 cut(s)	381, 561
SstI	GAGCTC	1 cut(s)	828
TaaI	ACNGT	4 cut(s)	13, 203, 499, 944
TaiI	ACGT	3 cut(s)	176, 978, 1009
TaqI	TCGA	2 cut(s)	39, 738
TasI	AATT	7 cut(s)	42, 112, 601, 801, 858, 1076, 1087
TatI	WGTACW	2 cut(s)	97, 555
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	4 cut(s)	245, 851, 857, 890
Tru9I	TTAA	4 cut(s)	245, 851, 857, 890
TscAI	CASTG	5 cut(s)	16, 64, 382, 549, 777
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	7 cut(s)	30, 410, 518, 644, 808, 817, 1082
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	17, 131, 912
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	5 cut(s)	16, 64, 382, 549, 777
VpaK11BI	GGWCC	1 cut(s)	944
VspI	ATTAAT	1 cut(s)	857
XapI	RAATTY	2 cut(s)	601, 801
XceI	RCATGY	1 cut(s)	507
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1093
XspI	CTAG	2 cut(s)	381, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.