Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

13549964 .. 13558422

Gene Structure 8459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTTCCACTGATAATTTTAAACTAACTATTGCTCCTATGTTCCATAAGATCCAATCTGCAGTCGAGATATATGGGATGACTACTCACGAAAGAGAGCTGATGAAACATTTCGACCACCATGTCCGCGAAGAAGAAAATCGTCAACAAGCTCAAGCAAACCAAGATTTGGCCAAATGTGTGCAACCTTCGGCCAAGGAGGCCGAGGAAGCTACTTCACCACCATTCACCACCACTACACCCATCCAATTATATTTGGCAACCTTTCCTGCGCAATCAAAGACTGCATTTATTTGCCTTTTTTTCTTCTTCTCTCTCCTACTCAACCTGGTACTTATTCATTCATTTCTTGGCTTTTCTTTTACACGTGCACTTCGAGCAACTTTTAACAACCCAGAGCAAGCAGTGGACTACTTGTACTCTAGTATTCCAGAAACAGCAGAAGTTGCAGTGCCTGTGGCTCATTTCCCTGCATGTCAGGCAACCGAAACAGGCATAGCCAATGCTCCACCTATCTCTGGAGGACCTAATTCATGTCCCCTGAATATGTTTCCGCAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

187

Amino Acids

20.8

Weight (kDa)

5.58

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
Acc16I	TGCGCA	1 cut(s)	273
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccII	CGCG	1 cut(s)	129
AciI	CCGC	2 cut(s)	127, 554
AclWI	GGATC	1 cut(s)	46
AcoI	YGGCCR	2 cut(s)	171, 192
AcvI	CACGTG	1 cut(s)	368
AfaI	GTAC	2 cut(s)	333, 419
AfiI	CCNNNNNNNGG	2 cut(s)	169, 518
AflIII	ACRYGT	1 cut(s)	365
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	3 cut(s)	100, 152, 212
AluI	AGCT	3 cut(s)	100, 152, 212
Alw21I	GWGCWC	1 cut(s)	373
Alw44I	GTGCAC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	46
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	3 cut(s)	171, 192, 201
ApaLI	GTGCAC	1 cut(s)	369
Asp700I	GAANNNNTTC	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	210, 220
AvaII	GGWCC	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	373
BalI	TGGCCA	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	373
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	329
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	60
BglI	GCCNNNNNGGC	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmrFI	CCNGG	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	195, 204
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 518
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	195, 204
BseGI	GGATG	2 cut(s)	84, 243
BseLI	CCNNNNNNNGG	2 cut(s)	169, 518
BseSI	GKGCMC	1 cut(s)	373
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	173, 194, 203
BsiHKAI	GWGCWC	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	2 cut(s)	169, 518
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	3 cut(s)	173, 194, 203
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	127, 554
BspANI	GGCC	3 cut(s)	173, 194, 203
BspFNI	CGCG	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	195, 204
BssMI	GATC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	84, 243
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 209, 377, 446, 479
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	373
BstUI	CGCG	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	173, 194, 203
BtsCI	GGATG	2 cut(s)	84, 243
BtsI	GCAGTG	2 cut(s)	411, 456
BtsIMutI	CAGTG	3 cut(s)	9, 411, 456
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	455
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	524
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	2 cut(s)	332, 418
CviAII	CATG	3 cut(s)	122, 474, 534
CviQI	GTAC	2 cut(s)	332, 418
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DraI	TTTAAA	1 cut(s)	22
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	2 cut(s)	171, 192
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	524
Eco72I	CACGTG	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	125, 477, 537
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	3 cut(s)	121, 473, 533
FokI	GGATG	2 cut(s)	91, 230
FspBI	CTAG	1 cut(s)	423
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	3 cut(s)	173, 194, 203
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	3 cut(s)	125, 477, 537
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HphI	GGTGA	2 cut(s)	210, 220
Hpy166II	GTNNAC	3 cut(s)	146, 371, 409
Hpy188III	TCNNGA	4 cut(s)	67, 89, 431, 519
Hpy8I	GTNNAC	3 cut(s)	146, 371, 409
HpyAV	CCTTC	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	6 cut(s)	62, 184, 287, 371, 449, 473
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 209, 377, 446, 479
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	3 cut(s)	125, 477, 537
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	40, 511
MabI	ACCWGGT	1 cut(s)	327
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	367
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	4 cut(s)	143, 146, 298, 301
MflI	RGATCY	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	373
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	3 cut(s)	16, 248, 529
MluNI	TGGCCA	1 cut(s)	173
MnlI	CCTC	3 cut(s)	193, 199, 515
Mox20I	TGGCCA	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	110
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	2 cut(s)	21, 387
Msp20I	TGGCCA	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	5 cut(s)	200, 209, 377, 446, 479
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	3 cut(s)	125, 477, 537
NmeAIII	GCCGAG	1 cut(s)	229
NsbI	TGCGCA	1 cut(s)	273
NspI	RCATGY	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	169
PmaCI	CACGTG	1 cut(s)	368
PmlI	CACGTG	1 cut(s)	368
Ppu21I	YACGTR	1 cut(s)	368
PpuMI	RGGWCCY	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	327
PspCI	CACGTG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	524
PspPPI	RGGWCCY	1 cut(s)	524
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	2 cut(s)	333, 419
RsaNI	GTAC	2 cut(s)	332, 418
SaqAI	TTAA	2 cut(s)	21, 387
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	9 cut(s)	102, 154, 190, 214, 266, 330, 370, 514, 529
SexAI	ACCWGGT	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	60
SfiI	GGCCNNNNNGGCC	1 cut(s)	200
SinI	GGWCC	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	3 cut(s)	16, 248, 529
SsiI	CCGC	2 cut(s)	127, 554
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	3 cut(s)	66, 114, 376
TasI	AATT	3 cut(s)	16, 248, 529
TatI	WGTACW	1 cut(s)	417
Tru1I	TTAA	2 cut(s)	21, 387
Tru9I	TTAA	2 cut(s)	21, 387
TscAI	CASTG	3 cut(s)	16, 411, 456
TspDTI	ATGAA	4 cut(s)	119, 329, 333, 522
TspRI	CASTG	3 cut(s)	16, 411, 456
Van91I	CCANNNNNTGG	1 cut(s)	169
VneI	GTGCAC	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	524
XceI	RCATGY	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.