Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

48444715 .. 48447567

Gene Structure 2853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019212

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTCCAGCTTTTATGTTGTCTTAATCATGTATAAGCTATTCTGTATATCTGTGTCACAGCCTGCTTCTACAATTCCACCTACAATGGCACCAATCACAAATTCTACTGCCAGAGCCGAAGCTCCCATACAAGCACCGCCCTCAGAGAGTACCACTCCTGCTTCAGACACCGCTAATGTGCATACTGATACCTATGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAATCTTGATCAGACTATTCAACAGATAATGGATATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCACTTCGAGCAGCTTATAACAACCCAGAGCGAGCAGTGGACTACTTGTACTCTAGTATTCCAGAAACAGCGGAAGTTGCAGTGCCTGTGGCTCATTTCCCTGCAAGTCAGGCAACTGAAACAGGCATAGCCAATGCTCCACCTGTCTCCGGAGCACCTAATTCAGCTCCCCTGAATATGTTTCCACAGGAAGCACTGTCCGGTGCTGGTGCTGGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCAGTTCCAAACGTTGCGCTCAATGGTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAGCAAAACCCCCAGCTTTTAAGATTAATTCAGGAGCACCATGCCGAGTTCCTTCAGTTAATAAATGAACCTCTTGAGGGTTCTGAAGGTGACATGTTTGAACAGCCTGATCAAGAAATGCCACATGCTATCAATGTAACTCCAGCGGAACAGGAGGCCATTGAACGACTTGAGGCAATGGGATTTGATAGAGCCTTGGTGATTGAGGCGTTTTTGGCATGTGACCGTAATGAAGAGCTGGCAGCCAACTATCTATTGGAGAATGCTGGAGATTTCGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

303

Amino Acids

32.7

Weight (kDa)

4.34

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA	PF00627	79 - 116	3.1e-11	UBA/TS-N domain
XPC-binding	PF09280	177 - 232	1e-22	XPC-binding domain
UBA	PF00627	258 - 293	1.9e-11	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	449
AciI	CCGC	4 cut(s)	137, 171, 371, 770
AclI	AACGTT	1 cut(s)	563
AclWI	GGATC	2 cut(s)	519, 532
AcsI	RAATTY	3 cut(s)	100, 211, 594
AcuI	CTGAAG	3 cut(s)	147, 662, 729
AcvI	CACGTG	1 cut(s)	299
AfaI	GTAC	3 cut(s)	151, 350, 579
AfiI	CCNNNNNNNGG	2 cut(s)	449, 701
AflIII	ACRYGT	2 cut(s)	296, 717
AgsI	TTSAA	3 cut(s)	248, 725, 788
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AluBI	AGCT	8 cut(s)	9, 37, 122, 203, 314, 467, 640, 862
AluI	AGCT	8 cut(s)	9, 37, 122, 203, 314, 467, 640, 862
Alw21I	GWGCWC	4 cut(s)	304, 457, 520, 663
Alw26I	GTCTC	1 cut(s)	451
Alw44I	GTGCAC	2 cut(s)	300, 516
AlwI	GGATC	2 cut(s)	519, 532
AlwNI	CAGNNNCTG	1 cut(s)	386
Aor13HI	TCCGGA	1 cut(s)	449
AoxI	GGCC	1 cut(s)	780
ApaLI	GTGCAC	2 cut(s)	300, 516
ApeKI	GCWGC	4 cut(s)	203, 311, 610, 866
ApoI	RAATTY	3 cut(s)	100, 211, 594
AseI	ATTAAT	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	570
AsuHPI	GGTGA	2 cut(s)	725, 835
AsuII	TTCGAA	1 cut(s)	900
BaeGI	GKGCMC	2 cut(s)	304, 520
BamHI	GGATCC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	88
BarI	GAAGNNNNNNTAC	2 cut(s)	111, 143
BbrPI	CACGTG	1 cut(s)	299
Bbv12I	GWGCWC	4 cut(s)	304, 457, 520, 663
BbvI	GCAGC	4 cut(s)	190, 323, 597, 878
BclI	TGATCA	2 cut(s)	235, 733
BcoDI	GTCTC	1 cut(s)	451
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	611
BisI	GCNGC	4 cut(s)	204, 312, 611, 867
BlsI	GCNGC	4 cut(s)	205, 313, 612, 868
BmiI	GGNNCC	2 cut(s)	90, 526
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpmI	CTGGAG	1 cut(s)	750
Bpu14I	TTCGAA	1 cut(s)	900
BpuEI	CTTGAG	2 cut(s)	719, 815
BsaAI	YACGTR	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	819
BsaWI	WCCGGW	2 cut(s)	449, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 701
Bse3DI	GCAATG	1 cut(s)	807
BseAI	TCCGGA	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	819
BseLI	CCNNNNNNNGG	2 cut(s)	449, 701
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	1 cut(s)	156
BseSI	GKGCMC	2 cut(s)	304, 520
BseXI	GCAGC	4 cut(s)	190, 323, 597, 878
BseYI	CCCAGC	1 cut(s)	636
BshFI	GGCC	1 cut(s)	782
BshNI	GGYRCC	1 cut(s)	88
BsiHKAI	GWGCWC	4 cut(s)	304, 457, 520, 663
BsiSI	CCGG	2 cut(s)	450, 501
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	449, 701
BsmAI	GTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	1 cut(s)	782
Bsp119I	TTCGAA	1 cut(s)	900
Bsp1286I	GDGCHC	4 cut(s)	304, 457, 520, 663
Bsp13I	TCCGGA	1 cut(s)	449
Bsp143I	GATC	3 cut(s)	235, 524, 733
BspACI	CCGC	4 cut(s)	137, 171, 371, 770
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	1 cut(s)	155
BspEI	TCCGGA	1 cut(s)	449
BspLI	GGNNCC	2 cut(s)	90, 526
BspMAI	CTGCAG	1 cut(s)	615
BspPI	GGATC	2 cut(s)	519, 532
BspQI	GCTCTTC	1 cut(s)	852
BspT104I	TTCGAA	1 cut(s)	900
BspT107I	GGYRCC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	807
BssECI	CCNNGG	1 cut(s)	819
BssMI	GATC	3 cut(s)	235, 524, 733
BssT1I	CCWWGG	1 cut(s)	819
Bst4CI	ACNGT	3 cut(s)	292, 498, 851
Bst6I	CTCTTC	1 cut(s)	852
BstBAI	YACGTR	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	900
BstC8I	GCNNGC	3 cut(s)	63, 333, 864
BstDEI	CTNAG	2 cut(s)	142, 539
BstHHI	GCGC	1 cut(s)	570
BstKTI	GATC	3 cut(s)	238, 527, 736
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	3 cut(s)	235, 524, 733
BstMWI	GCNNNNNNNGC	5 cut(s)	308, 377, 410, 610, 839
BstNSI	RCATGY	3 cut(s)	721, 752, 846
BstSFI	CTRYAG	1 cut(s)	611
BstSLI	GKGCMC	2 cut(s)	304, 520
BstV1I	GCAGC	4 cut(s)	190, 323, 597, 878
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BsuRI	GGCC	1 cut(s)	782
BtsI	GCAGTG	2 cut(s)	342, 387
BtsIMutI	CAGTG	3 cut(s)	342, 387, 494
Cac8I	GCNNGC	3 cut(s)	63, 333, 864
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	1 cut(s)	570
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	150, 349, 578
CviAII	CATG	6 cut(s)	28, 607, 665, 718, 749, 843
CviQI	GTAC	3 cut(s)	150, 349, 578
DdeI	CTNAG	2 cut(s)	142, 539
DpnI	GATC	3 cut(s)	237, 526, 735
DpnII	GATC	3 cut(s)	235, 524, 733
Eam1104I	CTCTTC	1 cut(s)	852
EarI	CTCTTC	1 cut(s)	852
Eco130I	CCWWGG	1 cut(s)	819
Eco57I	CTGAAG	3 cut(s)	147, 662, 729
Eco72I	CACGTG	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	819
ErhI	CCWWGG	1 cut(s)	819
FaeI	CATG	6 cut(s)	31, 610, 668, 721, 752, 846
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	6 cut(s)	27, 606, 664, 717, 748, 842
FbaI	TGATCA	2 cut(s)	235, 733
Fnu4HI	GCNGC	4 cut(s)	204, 312, 611, 867
Fsp4HI	GCNGC	4 cut(s)	204, 312, 611, 867
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	569
GluI	GCNGC	4 cut(s)	204, 312, 611, 867
GsaI	CCCAGC	1 cut(s)	640
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	2 cut(s)	450, 501
HgaI	GACGC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	570
Hin1II	CATG	6 cut(s)	31, 610, 668, 721, 752, 846
Hin6I	GCGC	1 cut(s)	568
HinP1I	GCGC	1 cut(s)	568
HpaII	CCGG	2 cut(s)	450, 501
HphI	GGTGA	2 cut(s)	725, 835
Hpy166II	GTNNAC	3 cut(s)	302, 340, 518
Hpy188I	TCNGA	4 cut(s)	145, 166, 240, 709
Hpy188III	TCNNGA	6 cut(s)	233, 362, 450, 656, 698, 737
Hpy8I	GTNNAC	3 cut(s)	302, 340, 518
HpyAV	CCTTC	2 cut(s)	686, 704
HpyCH4III	ACNGT	3 cut(s)	292, 498, 851
HpyCH4IV	ACGT	2 cut(s)	298, 563
HpyCH4V	TGCA	6 cut(s)	181, 302, 380, 404, 518, 613
HpyF10VI	GCNNNNNNNGC	5 cut(s)	308, 377, 410, 610, 839
HpyF3I	CTNAG	2 cut(s)	142, 539
HpySE526I	ACGT	2 cut(s)	298, 563
Hsp92II	CATG	6 cut(s)	31, 610, 668, 721, 752, 846
HspAI	GCGC	1 cut(s)	568
Kpn2I	TCCGGA	1 cut(s)	449
Ksp22I	TGATCA	2 cut(s)	235, 733
Kzo9I	GATC	3 cut(s)	235, 524, 733
LguI	GCTCTTC	1 cut(s)	852
LmnI	GCTCC	5 cut(s)	127, 442, 452, 472, 658
Lsp1109I	GCAGC	4 cut(s)	190, 323, 597, 878
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	2 cut(s)	298, 563
MaeIII	GTNAC	5 cut(s)	54, 292, 713, 760, 845
MalI	GATC	3 cut(s)	237, 526, 735
MboI	GATC	3 cut(s)	235, 524, 733
MboII	GAAGA	1 cut(s)	869
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	4 cut(s)	304, 457, 520, 663
MluCI	AATT	7 cut(s)	72, 100, 211, 274, 460, 594, 651
MnlI	CCTC	7 cut(s)	151, 539, 694, 705, 772, 790, 823
MroI	TCCGGA	1 cut(s)	449
MseI	TTAA	4 cut(s)	23, 644, 650, 683
MspA1I	CMGCKG	2 cut(s)	371, 770
MspI	CCGG	2 cut(s)	450, 501
Mva1269I	GAATGC	1 cut(s)	892
MwoI	GCNNNNNNNGC	5 cut(s)	308, 377, 410, 610, 839
NdeII	GATC	3 cut(s)	235, 524, 733
NlaIII	CATG	6 cut(s)	31, 610, 668, 721, 752, 846
NlaIV	GGNNCC	2 cut(s)	90, 526
NmeAIII	GCCGAG	1 cut(s)	694
NmuCI	GTSAC	3 cut(s)	54, 713, 845
NspI	RCATGY	3 cut(s)	721, 752, 846
NspV	TTCGAA	1 cut(s)	900
PciI	ACATGT	1 cut(s)	717
PciSI	GCTCTTC	1 cut(s)	852
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PctI	GAATGC	1 cut(s)	892
PkrI	GCNGC	4 cut(s)	205, 313, 612, 868
PmaCI	CACGTG	1 cut(s)	299
PmlI	CACGTG	1 cut(s)	299
Ppu21I	YACGTR	1 cut(s)	299
PscI	ACATGT	1 cut(s)	717
PshBI	ATTAAT	1 cut(s)	650
PsiI	TTATAA	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	563
PspCI	CACGTG	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	636
PspN4I	GGNNCC	2 cut(s)	90, 526
PstI	CTGCAG	1 cut(s)	615
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	524
RsaI	GTAC	3 cut(s)	151, 350, 579
RsaNI	GTAC	3 cut(s)	150, 349, 578
SapI	GCTCTTC	1 cut(s)	852
SaqAI	TTAA	4 cut(s)	23, 644, 650, 683
SatI	GCNGC	4 cut(s)	204, 312, 611, 867
Sau3AI	GATC	3 cut(s)	235, 524, 733
SduI	GDGCHC	4 cut(s)	304, 457, 520, 663
SfcI	CTRYAG	1 cut(s)	611
SfuI	TTCGAA	1 cut(s)	900
SmlI	CTYRAG	2 cut(s)	698, 794
SmoI	CTYRAG	2 cut(s)	698, 794
Sse9I	AATT	7 cut(s)	72, 100, 211, 274, 460, 594, 651
SsiI	CCGC	4 cut(s)	137, 171, 371, 770
SspMI	CTAG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	3 cut(s)	292, 498, 851
TaiI	ACGT	2 cut(s)	301, 566
TaqI	TCGA	3 cut(s)	307, 531, 900
TasI	AATT	7 cut(s)	72, 100, 211, 274, 460, 594, 651
TatI	WGTACW	1 cut(s)	348
Tru1I	TTAA	4 cut(s)	23, 644, 650, 683
Tru9I	TTAA	4 cut(s)	23, 644, 650, 683
TscAI	CASTG	3 cut(s)	342, 387, 501
TseFI	GTSAC	3 cut(s)	54, 713, 845
TseI	GCWGC	4 cut(s)	203, 311, 610, 866
Tsp45I	GTSAC	3 cut(s)	54, 713, 845
TspDTI	ATGAA	2 cut(s)	705, 870
TspRI	CASTG	3 cut(s)	342, 387, 501
VneI	GTGCAC	2 cut(s)	300, 516
VspI	ATTAAT	1 cut(s)	650
XapI	RAATTY	3 cut(s)	100, 211, 594
XceI	RCATGY	3 cut(s)	721, 752, 846
XcmI	CCANNNNNNNNNTGG	1 cut(s)	877
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.