Rroxscaffold_4G00302760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001350
Physical Location & Seq
Reverse (-)
23121907 .. 23123645
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302760.1

Sequence Viewer

Length: 207 bp
ATGCTCCACCTATCTCCGGAGCACCTAATTCAGGTCCCTGAATATGTTTCCGCAGTTCCAAACGTTGCGCTCAATGTTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAGCAACCCCCACAGCTTTTAAGATTAATTCGGGAGCACCATGCCGAGTTCCGACCAAAAGGGATCCGGGGAGCGAGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.21

Weight (kDa)

7.98

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 1 cut(s) 51
AclI AACGTT 1 cut(s) 63
AclWI GGATC 2 cut(s) 182, 195
AcsI RAATTY 1 cut(s) 94
AfiI CCNNNNNNNGG 2 cut(s) 16, 31
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw21I GWGCWC 2 cut(s) 24, 163
AlwI GGATC 2 cut(s) 182, 195
Aor13HI TCCGGA 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 94
AseI ATTAAT 1 cut(s) 150
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 192
AvaII GGWCC 1 cut(s) 34
BamHI GGATCC 1 cut(s) 187
Bbv12I GWGCWC 2 cut(s) 24, 163
BbvI GCAGC 1 cut(s) 97
BcnI CCSGG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 2 cut(s) 36, 189
BmrFI CCNGG 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 31
BseAI TCCGGA 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 191
BseLI CCNNNNNNNGG 2 cut(s) 16, 31
BseXI GCAGC 1 cut(s) 97
BsiHKAI GWGCWC 2 cut(s) 24, 163
BsiSI CCGG 2 cut(s) 17, 191
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 16, 31
BsmFI GGGAC 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 24, 163
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 36, 189
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 2 cut(s) 182, 195
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 187
BstENI CCTNNNNNAGG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 34
CviAII CATG 2 cut(s) 107, 165
CviJI RGCY 3 cut(s) 84, 104, 140
CviKI_1 RGCY 3 cut(s) 84, 104, 140
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 34
EcoNI CCTNNNNNAGG 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 34
FaeI CATG 2 cut(s) 110, 168
FaiI YATR 3 cut(s) 45, 108, 166
FaqI GGGAC 1 cut(s) 20
FatI CATG 2 cut(s) 106, 164
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
GlaI GCGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 111
HapII CCGG 2 cut(s) 17, 191
HhaI GCGC 1 cut(s) 70
Hin1II CATG 2 cut(s) 110, 168
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HpaII CCGG 2 cut(s) 17, 191
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 17, 156
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 2 cut(s) 110, 168
HspAI GCGC 1 cut(s) 68
Kpn2I TCCGGA 1 cut(s) 16
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 4 cut(s) 9, 19, 158, 195
LpnPI CCDG 4 cut(s) 17, 30, 51, 99
Lsp1109I GCAGC 1 cut(s) 97
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 24, 163
MluCI AATT 3 cut(s) 27, 94, 151
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 1 cut(s) 193
MroI TCCGGA 1 cut(s) 16
MseI TTAA 2 cut(s) 144, 150
MspI CCGG 2 cut(s) 17, 191
MspR9I CCNGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 192
NdeII GATC 1 cut(s) 187
NlaIII CATG 2 cut(s) 110, 168
NlaIV GGNNCC 2 cut(s) 36, 189
NmeAIII GCCGAG 1 cut(s) 194
PkrI GCNGC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 34
PshBI ATTAAT 1 cut(s) 150
Psp1406I AACGTT 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 36, 189
PspPI GGNCC 1 cut(s) 34
PspPPI RGGWCCY 1 cut(s) 34
PstI CTGCAG 1 cut(s) 115
PsuI RGATCY 1 cut(s) 187
SaqAI TTAA 2 cut(s) 144, 150
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 2 cut(s) 24, 163
SetI ASST 5 cut(s) 12, 27, 36, 66, 142
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 34
Sse9I AATT 3 cut(s) 27, 94, 151
SsiI CCGC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 190
TaiI ACGT 1 cut(s) 66
TasI AATT 3 cut(s) 27, 94, 151
Tru1I TTAA 2 cut(s) 144, 150
Tru9I TTAA 2 cut(s) 144, 150
TseI GCWGC 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 34
VspI ATTAAT 1 cut(s) 150
XagI CCTNNNNNAGG 1 cut(s) 29
XapI RAATTY 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.