Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

9982332 .. 9985398

Gene Structure 3067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTTCATACTCGCTCCTTTGAATGGGAGACTCAGTGCAAGAGTGAAGTATGACTTGAGTGACGATTTCAATTTGCTCGGCCCTCAAAGAGTACCACTCCCGCTTCGTACGCCGCCGAGTATGCTTCTTTCTGCAGTTCCTATAATGATATTTGATGCATGTGATTTGAGCCCAGAAGAAAAGTTCCTGAGTTTGATTTGTGTGCATACTGATACCTATGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAATCTTGAGCAGACTATTCAACAGATAATGGATATGGGTGGTGGAAATTGGGACAGAGAAACGATTACACGTGCGCTTCGAGCGGCTTTTAACAACCCGACTGTTGACATAGTGTTGTTCGAGTATTCCGTAAACAGCGCGAAAGTTGCAAAGGTTCGTGACTCATTTCCCCTTCCAAACATTGCGCTCAATGTTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAGCAAAACCCACAGCTTTTAAGTTTAATTCAGGAGCACCATGCCGAGTTCCTTCAGTTAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

186

Amino Acids

20.3

Weight (kDa)

8.49

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA	PF00627	87 - 117	1.7e-06	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	335
AccII	CGCG	1 cut(s)	392
AciI	CCGC	3 cut(s)	101, 113, 335
AcsI	RAATTY	2 cut(s)	235, 463
AcuI	CTGAAG	1 cut(s)	531
AcvI	CACGTG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	93, 109
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	320
AgsI	TTSAA	3 cut(s)	22, 70, 272
AluBI	AGCT	2 cut(s)	227, 509
AluI	AGCT	2 cut(s)	227, 509
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	227, 479
ApoI	RAATTY	2 cut(s)	235, 463
AspLEI	GCGC	3 cut(s)	328, 392, 439
AspS9I	GGNCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	2 cut(s)	214, 466
BcoDI	GTCTC	1 cut(s)	22
BfmI	CTRYAG	2 cut(s)	132, 480
BisI	GCNGC	4 cut(s)	113, 228, 336, 480
BlsI	GCNGC	4 cut(s)	114, 229, 337, 481
BmgT120I	GGNCC	1 cut(s)	80
BmsI	GCATC	1 cut(s)	145
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
BpuEI	CTTGAG	2 cut(s)	76, 278
BsaAI	YACGTR	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	46, 179
BseXI	GCAGC	2 cut(s)	214, 466
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	532
BsiWI	CGTACG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	81
Bsp1286I	GDGCHC	2 cut(s)	173, 532
BspACI	CCGC	3 cut(s)	101, 113, 335
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	2 cut(s)	45, 180
BspFNI	CGCG	1 cut(s)	392
BspMAI	CTGCAG	2 cut(s)	136, 484
BsrBI	CCGCTC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	355
BstBAI	YACGTR	1 cut(s)	323
BstDEI	CTNAG	2 cut(s)	32, 188
BstFNI	CGCG	1 cut(s)	392
BstHHI	GCGC	3 cut(s)	328, 392, 439
BstMAI	GTCTC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	5 cut(s)	109, 121, 332, 398, 479
BstNSI	RCATGY	1 cut(s)	162
BstSFI	CTRYAG	2 cut(s)	132, 480
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	2 cut(s)	214, 466
BsuRI	GGCC	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	40
CfoI	GCGC	3 cut(s)	328, 392, 439
Cfr13I	GGNCC	1 cut(s)	80
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	92, 108
CviAII	CATG	3 cut(s)	159, 476, 534
CviJI	RGCY	7 cut(s)	81, 171, 227, 338, 453, 473, 509
CviKI_1	RGCY	7 cut(s)	81, 171, 227, 338, 453, 473, 509
CviQI	GTAC	2 cut(s)	92, 108
DdeI	CTNAG	2 cut(s)	32, 188
Eco24I	GRGCYC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	531
Eco72I	CACGTG	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	3 cut(s)	162, 479, 537
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	3 cut(s)	158, 475, 533
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	113, 228, 336, 480
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	113, 228, 336, 480
GlaI	GCGC	3 cut(s)	327, 391, 438
GluI	GCNGC	4 cut(s)	113, 228, 336, 480
HaeIII	GGCC	1 cut(s)	81
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	3 cut(s)	328, 392, 439
Hin1II	CATG	3 cut(s)	162, 479, 537
Hin6I	GCGC	3 cut(s)	326, 390, 437
HinP1I	GCGC	3 cut(s)	326, 390, 437
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	2 cut(s)	30, 413
Hpy166II	GTNNAC	2 cut(s)	358, 385
Hpy188III	TCNNGA	4 cut(s)	187, 257, 410, 525
Hpy8I	GTNNAC	2 cut(s)	358, 385
HpyAV	CCTTC	2 cut(s)	434, 555
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	6 cut(s)	38, 134, 158, 205, 401, 482
HpyF10VI	GCNNNNNNNGC	5 cut(s)	109, 121, 332, 398, 479
HpyF3I	CTNAG	2 cut(s)	32, 188
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	3 cut(s)	162, 479, 537
HspAI	GCGC	3 cut(s)	326, 390, 437
LmnI	GCTCC	2 cut(s)	19, 527
LpnPI	CCDG	5 cut(s)	186, 200, 231, 468, 510
Lsp1109I	GCAGC	2 cut(s)	214, 466
LweI	GCATC	1 cut(s)	145
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	3 cut(s)	59, 410, 445
MbiI	CCGCTC	1 cut(s)	335
MboII	GAAGA	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	173, 532
MluCI	AATT	5 cut(s)	70, 235, 298, 463, 520
MlyI	GAGTC	2 cut(s)	24, 407
MnlI	CCTC	1 cut(s)	93
Mph1103I	ATGCAT	1 cut(s)	160
MseI	TTAA	4 cut(s)	342, 513, 519, 552
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	5 cut(s)	109, 121, 332, 398, 479
NlaIII	CATG	3 cut(s)	162, 479, 537
NmeAIII	GCCGAG	2 cut(s)	57, 141
NmuCI	GTSAC	2 cut(s)	59, 410
NsiI	ATGCAT	1 cut(s)	160
NspI	RCATGY	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	2 cut(s)	328, 378
Pfl23II	CGTACG	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	114, 229, 337, 481
PleI	GAGTC	2 cut(s)	24, 407
PmaCI	CACGTG	1 cut(s)	323
PmlI	CACGTG	1 cut(s)	323
PpsI	GAGTC	2 cut(s)	24, 407
Ppu21I	YACGTR	1 cut(s)	323
PspCI	CACGTG	1 cut(s)	323
PspLI	CGTACG	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	80
PstI	CTGCAG	2 cut(s)	136, 484
RsaI	GTAC	2 cut(s)	93, 109
RsaNI	GTAC	2 cut(s)	92, 108
SaqAI	TTAA	4 cut(s)	342, 513, 519, 552
SatI	GCNGC	4 cut(s)	113, 228, 336, 480
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	2 cut(s)	24, 407
SduI	GDGCHC	2 cut(s)	173, 532
SetI	ASST	5 cut(s)	218, 229, 325, 408, 511
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	2 cut(s)	132, 480
SmlI	CTYRAG	2 cut(s)	55, 257
SmoI	CTYRAG	2 cut(s)	55, 257
Sse9I	AATT	5 cut(s)	70, 235, 298, 463, 520
SsiI	CCGC	3 cut(s)	101, 113, 335
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	2 cut(s)	331, 372
TasI	AATT	5 cut(s)	70, 235, 298, 463, 520
TauI	GCSGC	2 cut(s)	115, 338
Tru1I	TTAA	4 cut(s)	342, 513, 519, 552
Tru9I	TTAA	4 cut(s)	342, 513, 519, 552
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	2 cut(s)	59, 410
TseI	GCWGC	2 cut(s)	227, 479
Tsp45I	GTSAC	2 cut(s)	59, 410
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	1 cut(s)	40
XapI	RAATTY	2 cut(s)	235, 463
XceI	RCATGY	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.