Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

39031189 .. 39033179

Gene Structure 1991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATGTTAACTCTCTTGTGTTTCAATTGCAACGTGCATACTGATACCTATGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAATCTTGAGCAGACTATTCAACAGATAATGGATATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCACTTCGAGCGGCTTTTAACAACCCGGAGCGAGCAGTGGACTACTTGTACTCTTTCCAAACGTTGCACTCAATGTTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAGCAAAACCCACAGCTTTTAAGATTAATTCAGGAGCACCATGCCGAGTTCCTTCAGTTAATAAATGAACCTCTTGAGGGTTTTGAAGGGACCAAAAGGGATCCAGGGAGCAGGAGTAGAAGTTTGGTATTTTCATATGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

141

Amino Acids

16.03

Weight (kDa)

5.3

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA	PF00627	31 - 68	1.7e-12	UBA/TS-N domain
XPC-binding	PF09280	70 - 117	3.9e-17	XPC-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	167
AciI	CCGC	1 cut(s)	167
AclI	AACGTT	1 cut(s)	218
AclWI	GGATC	2 cut(s)	374, 387
AcsI	RAATTY	2 cut(s)	67, 249
AcuI	CTGAAG	1 cut(s)	317
AcvI	CACGTG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	25, 104, 365
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	2 cut(s)	59, 295
AluI	AGCT	2 cut(s)	59, 295
Alw21I	GWGCWC	2 cut(s)	160, 318
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	374, 387
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	59, 265
ApoI	RAATTY	2 cut(s)	67, 249
AseI	ATTAAT	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	369
BaeGI	GKGCMC	1 cut(s)	160
BamHI	GGATCC	1 cut(s)	379
BbrPI	CACGTG	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	160, 318
BbvI	GCAGC	2 cut(s)	46, 252
BciT130I	CCWGG	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	266
BisI	GCNGC	3 cut(s)	60, 168, 266
BlsI	GCNGC	3 cut(s)	61, 169, 267
Bme1390I	CCNGG	2 cut(s)	182, 384
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	2 cut(s)	370, 381
BmrFI	CCNGG	2 cut(s)	182, 384
BpuEI	CTTGAG	2 cut(s)	110, 374
BpuMI	CCSGG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	383
BsaXI	ACNNNNNCTCC	4 cut(s)	379, 385, 409, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	383
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	46, 252
BsiHKAI	GWGCWC	2 cut(s)	160, 318
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	2 cut(s)	149, 382
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmFI	GGGAC	2 cut(s)	149, 382
Bsp1286I	GDGCHC	2 cut(s)	160, 318
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	1 cut(s)	167
BspLI	GGNNCC	2 cut(s)	370, 381
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	2 cut(s)	374, 387
BsrBI	CCGCTC	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	148
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	189
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 265
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	180, 382
BstSFI	CTRYAG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	46, 252
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	369
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	2 cut(s)	262, 320
CviJI	RGCY	5 cut(s)	59, 170, 239, 259, 295
CviKI_1	RGCY	5 cut(s)	59, 170, 239, 259, 295
CviQI	GTAC	1 cut(s)	205
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	317
Eco72I	CACGTG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	382
FaeI	CATG	2 cut(s)	265, 323
FaiI	YATR	7 cut(s)	39, 51, 119, 263, 321, 415, 417
FaqI	GGGAC	2 cut(s)	149, 382
FatI	CATG	2 cut(s)	261, 319
FauNDI	CATATG	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	60, 168, 266
Fsp4HI	GCNGC	3 cut(s)	60, 168, 266
GluI	GCNGC	3 cut(s)	60, 168, 266
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	265, 323
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	3 cut(s)	9, 158, 196
Hpy188III	TCNNGA	3 cut(s)	89, 311, 353
Hpy8I	GTNNAC	3 cut(s)	9, 158, 196
HpyAV	CCTTC	2 cut(s)	341, 359
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	3 cut(s)	33, 154, 218
HpyCH4V	TGCA	5 cut(s)	30, 37, 158, 223, 268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 265
HpySE526I	ACGT	3 cut(s)	33, 154, 218
Hsp92II	CATG	2 cut(s)	265, 323
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	3 cut(s)	184, 313, 387
LpnPI	CCDG	7 cut(s)	63, 195, 254, 296, 369, 376, 396
Lsp1109I	GCAGC	2 cut(s)	46, 252
MaeII	ACGT	3 cut(s)	33, 154, 218
MaeIII	GTNAC	2 cut(s)	148, 231
MalI	GATC	1 cut(s)	381
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	1 cut(s)	379
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	160, 318
MluCI	AATT	5 cut(s)	25, 67, 130, 249, 306
MnlI	CCTC	2 cut(s)	349, 360
MseI	TTAA	5 cut(s)	8, 174, 299, 305, 338
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	182, 384
MunI	CAATTG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	164, 265
NciI	CCSGG	1 cut(s)	182
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	2 cut(s)	265, 323
NlaIV	GGNNCC	2 cut(s)	370, 381
NmeAIII	GCCGAG	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PkrI	GCNGC	3 cut(s)	61, 169, 267
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	155
PshBI	ATTAAT	1 cut(s)	305
Psp1406I	AACGTT	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	382
PspCI	CACGTG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	370, 381
PspPI	GGNCC	1 cut(s)	369
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	5 cut(s)	8, 174, 299, 305, 338
SatI	GCNGC	3 cut(s)	60, 168, 266
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	369
ScrFI	CCNGG	2 cut(s)	182, 384
SduI	GDGCHC	2 cut(s)	160, 318
SetI	ASST	7 cut(s)	36, 50, 61, 157, 221, 297, 352
SfcI	CTRYAG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	89, 353
SmoI	CTYRAG	2 cut(s)	89, 353
Sse9I	AATT	5 cut(s)	25, 67, 130, 249, 306
SsiI	CCGC	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	180, 382
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	3 cut(s)	36, 157, 221
TaqI	TCGA	1 cut(s)	163
TasI	AATT	5 cut(s)	25, 67, 130, 249, 306
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	1 cut(s)	170
Tru1I	TTAA	5 cut(s)	8, 174, 299, 305, 338
Tru9I	TTAA	5 cut(s)	8, 174, 299, 305, 338
TscAI	CASTG	1 cut(s)	198
TseI	GCWGC	2 cut(s)	59, 265
TspDTI	ATGAA	2 cut(s)	360, 402
TspRI	CASTG	1 cut(s)	198
VneI	GTGCAC	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	369
VspI	ATTAAT	1 cut(s)	305
XapI	RAATTY	2 cut(s)	67, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.