Prupe.3G105900_v2.0.a1

DNA repair protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
8386566 .. 8392479
5914 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G105900.1

Sequence Viewer

Length: 1125 bp
ATGAAGCTCACTGTAAAGACCCTCAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCCACTGACACCGTTATGGCTGTGAAGAAGAACATTGAAGATGTACAAGGAAAAGATAATTATCCATGTGGGCAGCAGTTATTGATTCACAATGGGAAGGTCTTGAAAGATGAAACTACATTGGCTGACAACAAGGTCACAGAAGATGGTTTTCTTGTTGTCATGCTTAGCAAGAGTAAAACTTCAGGCTTAGCAGGGGCTTCATCCACTCAGCCTACTTCCACAAATCCTCCTCCAACTCCACCAACCACAAATTCTACAACCAGACCCGAAGCTCCTGCACAACCACCACCCGTACAGAGTACCATATCTGCTTCCGACAGTGCGAATGTGCATACTGATACCTATGGTCAAGCTGCTTCAACTTTACTTGCTGGTACTAATCTTGAGCAGACTATTCAACAAATAATGGATATGGGCGGTGGAAACTGGGACAGAGAAACAGTTACACGTGCACTTCGAGCGGCATATAACAATCCAGAGAGAGCAGTCGACTACTTGTACTCTAGTATTCCAGAAACAGCAGAAGTTGCAGTGCCGGTAGGACATTTCCCGGCAAGCCAGGCAACTGAAACAGGGGCAGCCAATGCTGCACCTGTCTCTGGAGCACCTAACTCTGCTCCTTTGAATATGTTTCCTCAGGAAACACTCTCTGGTGCTGGTGCTGGTGCACTTGGATCCCTTGCCTTCCTCAGGAATAATCGCCAGTTCCAAGCATTGCGCTCAATGGTGCAAGCAAATCCACAAATTTTACAGCCCATGCTGCAGGAGCTTGGAAAGCAAAACCCCCAGCTTTTAAGATTAATTCAGGAACACCACACTGAGTTCCTTCAGTTAATAAATGAACCTCTTGAGGGGTCTGAAGGTGACATATTTGATCAGCCTGACGGCCCTGACCAAGATATGCCTCATGCCATCAACGTAACCCCGGCTGAGCAGGAGGCCATTGAACGACTCGAAGCAATGGGATTTGATAGGGCCTTGGTCATCGAGGCATTTTTAGCATGCGATCGCAATGAAGAATTGGCAGCAAACTACTTATTGGAGAATGCTGGAGATTTTGAGGATTGA

Protein Analysis

375

Amino Acids

40.23

Weight (kDa)

4.63

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AccBSI CCGCTC 1 cut(s) 518
AccI GTMKAC 1 cut(s) 546
AciI CCGC 2 cut(s) 474, 518
AclWI GGATC 2 cut(s) 726, 739
AcsI RAATTY 2 cut(s) 307, 801
AcuI CTGAAG 3 cut(s) 222, 869, 936
AcvI CACGTG 1 cut(s) 506
AfaI GTAC 5 cut(s) 99, 351, 358, 433, 557
AfiI CCNNNNNNNGG 3 cut(s) 656, 747, 908
AflIII ACRYGT 1 cut(s) 503
AgsI TTSAA 6 cut(s) 92, 160, 417, 455, 682, 1004
AjnI CCWGG 1 cut(s) 615
AjuI GAANNNNNNNTTGG 2 cut(s) 292, 324
AluBI AGCT 5 cut(s) 7, 329, 410, 826, 847
AluI AGCT 5 cut(s) 7, 329, 410, 826, 847
Alw21I GWGCWC 3 cut(s) 511, 664, 727
Alw26I GTCTC 1 cut(s) 658
Alw44I GTGCAC 2 cut(s) 507, 723
AlwI GGATC 2 cut(s) 726, 739
AoxI GGCC 3 cut(s) 943, 996, 1032
ApaLI GTGCAC 2 cut(s) 507, 723
ApeKI GCWGC 7 cut(s) 30, 127, 410, 635, 644, 817, 1082
ApoI RAATTY 2 cut(s) 307, 801
AseI ATTAAT 1 cut(s) 857
AsiSI GCGATCGC 1 cut(s) 1066
AspLEI GCGC 1 cut(s) 777
AspS9I GGNCC 2 cut(s) 944, 1032
AsuC2I CCSGG 2 cut(s) 608, 983
AsuHPI GGTGA 1 cut(s) 932
AsuII TTCGAA 1 cut(s) 39
AxyI CCTNAGG 2 cut(s) 693, 746
BaeGI GKGCMC 2 cut(s) 511, 727
BamHI GGATCC 1 cut(s) 731
BbrPI CACGTG 1 cut(s) 506
Bbv12I GWGCWC 3 cut(s) 511, 664, 727
BbvI GCAGC 7 cut(s) 42, 139, 397, 631, 647, 804, 1094
BccI CCATC 2 cut(s) 194, 977
BceAI ACGGC 1 cut(s) 958
BcgI CGANNNNNNTGC 4 cut(s) 19, 53, 314, 348
BciT130I CCWGG 1 cut(s) 617
BclI TGATCA 1 cut(s) 931
BcnI CCSGG 2 cut(s) 608, 983
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 818
BisI GCNGC 8 cut(s) 31, 128, 411, 519, 636, 645, 818, 1083
BlpI GCTNAGC 3 cut(s) 221, 244, 987
BlsI GCNGC 8 cut(s) 32, 129, 412, 520, 637, 646, 819, 1084
Bme1390I CCNGG 3 cut(s) 608, 617, 983
BmgT120I GGNCC 2 cut(s) 944, 1032
BmiI GGNNCC 1 cut(s) 733
BmrFI CCNGG 3 cut(s) 608, 617, 983
BmrI ACTGGG 1 cut(s) 493
BmuI ACTGGG 1 cut(s) 493
BpmI CTGGAG 1 cut(s) 678
Bpu1102I GCTNAGC 3 cut(s) 221, 244, 987
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 2 cut(s) 461, 926
BpuMI CCSGG 2 cut(s) 608, 983
BsaAI YACGTR 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 981, 1035
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 3 cut(s) 656, 747, 908
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 2 cut(s) 488, 760
Bse21I CCTNAGG 2 cut(s) 693, 746
Bse3DI GCAATG 3 cut(s) 770, 1023, 1075
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 2 cut(s) 981, 1035
BseGI GGATG 1 cut(s) 257
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 3 cut(s) 656, 747, 908
BseMI GCAATG 3 cut(s) 770, 1023, 1075
BseMII CTCAG 5 cut(s) 278, 707, 760, 867, 978
BseNI ACTGG 2 cut(s) 488, 760
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 2 cut(s) 511, 727
BseXI GCAGC 7 cut(s) 42, 139, 397, 631, 647, 804, 1094
BseYI CCCAGC 1 cut(s) 843
BsgI GTGCAG 2 cut(s) 318, 630
Bsh1285I CGRYCG 1 cut(s) 1066
BshFI GGCC 3 cut(s) 945, 998, 1034
BsiEI CGRYCG 1 cut(s) 1066
BsiHKAI GWGCWC 3 cut(s) 511, 664, 727
BsiSI CCGG 3 cut(s) 593, 608, 983
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 3 cut(s) 656, 747, 908
BsmAI GTCTC 1 cut(s) 658
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 1108
BsnI GGCC 3 cut(s) 945, 998, 1034
Bsp119I TTCGAA 1 cut(s) 39
Bsp1286I GDGCHC 3 cut(s) 511, 664, 727
Bsp1407I TGTACA 1 cut(s) 97
Bsp143I GATC 3 cut(s) 731, 931, 1063
Bsp1720I GCTNAGC 3 cut(s) 221, 244, 987
BspACI CCGC 2 cut(s) 474, 518
BspANI GGCC 3 cut(s) 945, 998, 1034
BspCNI CTCAG 5 cut(s) 277, 706, 759, 868, 979
BspLI GGNNCC 1 cut(s) 733
BspMAI CTGCAG 1 cut(s) 822
BspPI GGATC 2 cut(s) 726, 739
BspT104I TTCGAA 1 cut(s) 39
BsrBI CCGCTC 1 cut(s) 518
BsrDI GCAATG 3 cut(s) 770, 1023, 1075
BsrFI RCCGGY 1 cut(s) 592
BsrGI TGTACA 1 cut(s) 97
BsrI ACTGG 2 cut(s) 488, 760
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 2 cut(s) 981, 1035
BssMI GATC 3 cut(s) 731, 931, 1063
BssT1I CCWWGG 1 cut(s) 1035
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 4 cut(s) 13, 67, 377, 499
BstAPI GCANNNNNTGC 2 cut(s) 584, 641
BstAUI TGTACA 1 cut(s) 97
BstBAI YACGTR 1 cut(s) 506
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 613, 789, 1060
BstDEI CTNAG 7 cut(s) 221, 244, 264, 693, 746, 876, 987
BstENI CCTNNNNNAGG 1 cut(s) 745
BstF5I GGATG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 777
BstKTI GATC 3 cut(s) 734, 934, 1066
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 3 cut(s) 731, 931, 1063
BstMCI CGRYCG 1 cut(s) 1066
BstMWI GCNNNNNNNGC 9 cut(s) 515, 584, 617, 641, 644, 817, 823, 832, 1055
BstNI CCWGG 1 cut(s) 617
BstNSI RCATGY 1 cut(s) 1062
BstSCI CCNGG 3 cut(s) 606, 615, 981
BstSFI CTRYAG 1 cut(s) 818
BstSLI GKGCMC 2 cut(s) 511, 727
BstV1I GCAGC 7 cut(s) 42, 139, 397, 631, 647, 804, 1094
BstX2I RGATCY 1 cut(s) 731
BstYI RGATCY 1 cut(s) 731
Bsu36I CCTNAGG 2 cut(s) 693, 746
BsuRI GGCC 3 cut(s) 945, 998, 1034
BtsCI GGATG 1 cut(s) 257
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 5 cut(s) 9, 57, 382, 594, 873
Cac8I GCNNGC 3 cut(s) 613, 789, 1060
CfoI GCGC 1 cut(s) 777
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 2 cut(s) 944, 1032
Csp6I GTAC 5 cut(s) 98, 350, 357, 432, 556
CviAII CATG 5 cut(s) 120, 217, 814, 965, 1059
CviQI GTAC 5 cut(s) 98, 350, 357, 432, 556
DdeI CTNAG 7 cut(s) 221, 244, 264, 693, 746, 876, 987
DpnI GATC 3 cut(s) 733, 933, 1065
DpnII GATC 3 cut(s) 731, 931, 1063
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 1035
Eco57I CTGAAG 3 cut(s) 222, 869, 936
Eco72I CACGTG 1 cut(s) 506
Eco81I CCTNAGG 2 cut(s) 693, 746
EcoNI CCTNNNNNAGG 1 cut(s) 745
EcoO109I RGGNCCY 1 cut(s) 1032
EcoRII CCWGG 1 cut(s) 615
EcoT14I CCWWGG 1 cut(s) 1035
ErhI CCWWGG 1 cut(s) 1035
FaeI CATG 5 cut(s) 123, 220, 817, 968, 1062
FaqI GGGAC 1 cut(s) 500
FatI CATG 5 cut(s) 119, 216, 813, 964, 1058
FbaI TGATCA 1 cut(s) 931
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 8 cut(s) 31, 128, 411, 519, 636, 645, 818, 1083
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 8 cut(s) 31, 128, 411, 519, 636, 645, 818, 1083
FspBI CTAG 1 cut(s) 561
GlaI GCGC 1 cut(s) 776
GluI GCNGC 8 cut(s) 31, 128, 411, 519, 636, 645, 818, 1083
GsaI CCCAGC 1 cut(s) 847
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 3 cut(s) 945, 998, 1034
HapII CCGG 3 cut(s) 593, 608, 983
HhaI GCGC 1 cut(s) 777
Hin1II CATG 5 cut(s) 123, 220, 817, 968, 1062
Hin6I GCGC 1 cut(s) 775
HinP1I GCGC 1 cut(s) 775
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 2 cut(s) 139, 1008
HpaII CCGG 3 cut(s) 593, 608, 983
HphI GGTGA 1 cut(s) 932
Hpy166II GTNNAC 3 cut(s) 509, 547, 725
Hpy188I TCNGA 2 cut(s) 373, 916
Hpy188III TCNNGA 9 cut(s) 157, 440, 533, 569, 657, 695, 748, 863, 905
Hpy8I GTNNAC 3 cut(s) 509, 547, 725
HpyAV CCTTC 4 cut(s) 145, 751, 893, 911
HpyCH4III ACNGT 4 cut(s) 13, 67, 377, 499
HpyCH4IV ACGT 2 cut(s) 505, 975
HpyCH4V TGCA 8 cut(s) 335, 388, 509, 587, 647, 725, 787, 820
HpyF10VI GCNNNNNNNGC 9 cut(s) 515, 584, 617, 641, 644, 817, 823, 832, 1055
HpyF3I CTNAG 7 cut(s) 221, 244, 264, 693, 746, 876, 987
HpySE526I ACGT 2 cut(s) 505, 975
Hsp92II CATG 5 cut(s) 123, 220, 817, 968, 1062
HspAI GCGC 1 cut(s) 775
Ksp22I TGATCA 1 cut(s) 931
Kzo9I GATC 3 cut(s) 731, 931, 1063
LmnI GCTCC 4 cut(s) 334, 659, 679, 823
Lsp1109I GCAGC 7 cut(s) 42, 139, 397, 631, 647, 804, 1094
MaeI CTAG 1 cut(s) 561
MaeII ACGT 2 cut(s) 505, 975
MaeIII GTNAC 4 cut(s) 190, 499, 920, 976
MalI GATC 3 cut(s) 733, 933, 1065
MbiI CCGCTC 1 cut(s) 518
MboI GATC 3 cut(s) 731, 931, 1063
MboII GAAGA 5 cut(s) 91, 94, 104, 209, 1085
MflI RGATCY 1 cut(s) 731
MhlI GDGCHC 3 cut(s) 511, 664, 727
MluCI AATT 6 cut(s) 42, 112, 307, 801, 858, 1076
MlyI GAGTC 1 cut(s) 1002
MmeI TCCRAC 2 cut(s) 314, 396
MseI TTAA 3 cut(s) 851, 857, 890
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 3 cut(s) 593, 608, 983
MspR9I CCNGG 3 cut(s) 608, 617, 983
Mva1269I GAATGC 1 cut(s) 1108
MvaI CCWGG 1 cut(s) 617
MwoI GCNNNNNNNGC 9 cut(s) 515, 584, 617, 641, 644, 817, 823, 832, 1055
NciI CCSGG 2 cut(s) 608, 983
NdeII GATC 3 cut(s) 731, 931, 1063
NlaIII CATG 5 cut(s) 123, 220, 817, 968, 1062
NlaIV GGNNCC 1 cut(s) 733
NmuCI GTSAC 2 cut(s) 190, 920
NspI RCATGY 1 cut(s) 1062
NspV TTCGAA 1 cut(s) 39
PaeI GCATGC 1 cut(s) 1062
PcsI WCGNNNNNNNCGW 1 cut(s) 511
PctI GAATGC 1 cut(s) 1108
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 8 cut(s) 32, 129, 412, 520, 637, 646, 819, 1084
Ple19I CGATCG 1 cut(s) 1066
PleI GAGTC 1 cut(s) 1002
PmaCI CACGTG 1 cut(s) 506
PmlI CACGTG 1 cut(s) 506
PpsI GAGTC 1 cut(s) 1002
Ppu21I YACGTR 1 cut(s) 506
PshBI ATTAAT 1 cut(s) 857
Psp6I CCWGG 1 cut(s) 615
PspCI CACGTG 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 843
PspGI CCWGG 1 cut(s) 615
PspN4I GGNNCC 1 cut(s) 733
PspPI GGNCC 2 cut(s) 944, 1032
PstI CTGCAG 1 cut(s) 822
PsuI RGATCY 1 cut(s) 731
PvuI CGATCG 1 cut(s) 1066
RgaI GCGATCGC 1 cut(s) 1066
RsaI GTAC 5 cut(s) 99, 351, 358, 433, 557
RsaNI GTAC 5 cut(s) 98, 350, 357, 432, 556
RseI CAYNNNNRTG 1 cut(s) 68
SalI GTCGAC 1 cut(s) 545
SaqAI TTAA 3 cut(s) 851, 857, 890
SatI GCNGC 8 cut(s) 31, 128, 411, 519, 636, 645, 818, 1083
Sau3AI GATC 3 cut(s) 731, 931, 1063
Sau96I GGNCC 2 cut(s) 944, 1032
SchI GAGTC 1 cut(s) 1002
ScrFI CCNGG 3 cut(s) 608, 617, 983
SduI GDGCHC 3 cut(s) 511, 664, 727
SfaAI GCGATCGC 1 cut(s) 1066
SfcI CTRYAG 1 cut(s) 818
SfuI TTCGAA 1 cut(s) 39
SgfI GCGATCGC 1 cut(s) 1066
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 440, 905
SmoI CTYRAG 2 cut(s) 440, 905
SphI GCATGC 1 cut(s) 1062
Sse9I AATT 6 cut(s) 42, 112, 307, 801, 858, 1076
SsiI CCGC 2 cut(s) 474, 518
SspMI CTAG 1 cut(s) 561
StyD4I CCNGG 3 cut(s) 606, 615, 981
StyI CCWWGG 1 cut(s) 1035
TaaI ACNGT 4 cut(s) 13, 67, 377, 499
TaiI ACGT 2 cut(s) 508, 978
TaqI TCGA 5 cut(s) 39, 514, 546, 1011, 1044
TasI AATT 6 cut(s) 42, 112, 307, 801, 858, 1076
TatI WGTACW 2 cut(s) 97, 555
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 3 cut(s) 851, 857, 890
Tru9I TTAA 3 cut(s) 851, 857, 890
TscAI CASTG 5 cut(s) 16, 64, 382, 594, 880
TseFI GTSAC 2 cut(s) 190, 920
TseI GCWGC 7 cut(s) 30, 127, 410, 635, 644, 817, 1082
Tsp45I GTSAC 2 cut(s) 190, 920
TspDTI ATGAA 5 cut(s) 17, 180, 246, 912, 1086
TspRI CASTG 5 cut(s) 16, 64, 382, 594, 880
VneI GTGCAC 2 cut(s) 507, 723
VspI ATTAAT 1 cut(s) 857
XagI CCTNNNNNAGG 1 cut(s) 745
XapI RAATTY 2 cut(s) 307, 801
XceI RCATGY 1 cut(s) 1062
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.