Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

27603766 .. 27609646

Gene Structure 5881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1228500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAAGCTCACTGTAAAGACCCTCAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCCACTGACGCCGTTATGGCTGTGAAGAAGAACATTGAGGATATACAAGGAAAAGATAATTACCCATGTGGACAGCAGTTACTGATTCACAATGGGAAGGTCTTGAAAGACGAAACCACATTGGCTGACAACAAGGTCACAGAAGACGGTTTTCTTGTTGTCATGCTTAGCAAGAATAAAACTTCAGGCTTAGCAGGGTCTTCTTCTTCTCAGCCTCCCTCTACAAATCCTCCTACAACTCCACCAACCACAAATTCTACAAACAGAACTGAAGCTCCCATACAAGAACCACCCTTGCAGAGTACCACATCTGCTCCAGACACTTCTAGTGCGCATAGTGATACCTATGGTCAAGCTGCTTCAACTTTAGTCGCTGGTACTAATCTTGAGCAGACTATTCAACAAATAATGGATATGGGTGGTGGCAACTGGGACAAAGAAACAGTTACACGCGCCTTACGAGCAGCTTATAACAATCCGGAGCGAGCAGTGGACTACTTGTACTCTAGTATACCAGAAACAACAGAAGTTGCAGTTCCTGTAGGTAATTTCCCTGCAAGTCAGGCAACTGATGTTGCCCCCGTCTCTGGAGCGCCTAACTCTGCTCCTTTGAATATGTTTCCTCAGGAAACACTCTCTGGTGCTGGCGCTGGGGCCCTTGGATCCCTCGACTTCCTTAGGAATAATCGCCAGTTCCAAGCACTGCGCTCGATGGTGCAATCAAACCCACAAATTTTGCAGCCCATGCTGCAGGAGCTCGGAAAGCAAAACCCCCAGCTTTTAAGATTAATTCAGGAGCACCATACTGAGTTCCTTCAGTTAATAAATGAACCTGTTGAGGGTTCTGAAGGTGACATATTTGATCAGGCTGACGGTCCTGACCAAGATTTGCCTCATGCCATCAATGTAACCCCTGCCGAGCAGGAGGCCATTGAACGACTTGAGGCGATGGGATTTGACAGAGCGCTGGTCATTGAGGCTTTTCTGGCGTGCGATCGCAACGAGGAACTGGCAGCCAACTACCTATTGGAGAACGCTGGAGATTTCGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

370

Amino Acids

39.87

Weight (kDa)

4.53

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 74	5e-06	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 76	2.3e-14	Ubiquitin family
UBA	PF00627	148 - 185	4.6e-11	UBA/TS-N domain
XPC-binding	PF09280	241 - 296	2.9e-23	XPC-binding domain
UBA	PF00627	325 - 360	2.5e-11	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AasI	GACNNNNNNGTC	1 cut(s)	188
Acc16I	TGCGCA	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	565
AccII	CGCG	1 cut(s)	507
AccIII	TCCGGA	1 cut(s)	532
AclWI	GGATC	2 cut(s)	711, 724
AcsI	RAATTY	2 cut(s)	307, 786
AcuI	CTGAAG	4 cut(s)	222, 345, 854, 921
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	3 cut(s)	358, 433, 557
AfeI	AGCGCT	1 cut(s)	1020
AfiI	CCNNNNNNNGG	2 cut(s)	641, 893
AgsI	TTSAA	5 cut(s)	160, 417, 455, 667, 989
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AloI	GAACNNNNNNTCC	2 cut(s)	313, 345
AluBI	AGCT	6 cut(s)	7, 329, 410, 521, 811, 832
AluI	AGCT	6 cut(s)	7, 329, 410, 521, 811, 832
Alw21I	GWGCWC	2 cut(s)	813, 855
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	711, 724
AlwNI	CAGNNNCTG	2 cut(s)	136, 593
Aor13HI	TCCGGA	1 cut(s)	532
Aor51HI	AGCGCT	1 cut(s)	1020
AoxI	GGCC	2 cut(s)	708, 981
ApaI	GGGCCC	1 cut(s)	712
ApeKI	GCWGC	6 cut(s)	30, 410, 518, 793, 802, 1067
ApoI	RAATTY	2 cut(s)	307, 786
AseI	ATTAAT	1 cut(s)	842
AsiSI	GCGATCGC	1 cut(s)	1051
AspLEI	GCGC	6 cut(s)	388, 509, 649, 704, 762, 1021
AspS9I	GGNCC	3 cut(s)	708, 709, 929
AsuHPI	GGTGA	1 cut(s)	917
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	929
AxyI	CCTNAGG	2 cut(s)	678, 731
BaeGI	GKGCMC	1 cut(s)	712
BamHI	GGATCC	1 cut(s)	716
BanII	GRGCYC	2 cut(s)	712, 813
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
BbsI	GAAGAC	2 cut(s)	204, 246
Bbv12I	GWGCWC	2 cut(s)	813, 855
BbvI	GCAGC	6 cut(s)	42, 397, 530, 789, 805, 1079
BccI	CCATC	3 cut(s)	760, 962, 997
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	4 cut(s)	19, 53, 744, 778
BclI	TGATCA	1 cut(s)	916
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	2 cut(s)	381, 561
BfmI	CTRYAG	2 cut(s)	594, 803
BfoI	RGCGCY	3 cut(s)	650, 705, 1022
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	6 cut(s)	31, 411, 519, 794, 803, 1068
BlpI	GCTNAGC	2 cut(s)	221, 244
BlsI	GCNGC	6 cut(s)	32, 412, 520, 795, 804, 1069
Bme18I	GGWCC	1 cut(s)	929
BmgT120I	GGNCC	3 cut(s)	708, 709, 929
BmiI	GGNNCC	3 cut(s)	709, 710, 718
BmrI	ACTGGG	1 cut(s)	493
BmuI	ACTGGG	1 cut(s)	493
BpiI	GAAGAC	2 cut(s)	204, 246
BpmI	CTGGAG	2 cut(s)	354, 663
Bpu1102I	GCTNAGC	2 cut(s)	221, 244
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	461, 1016
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	712
BsaWI	WCCGGW	1 cut(s)	532
BsaXI	ACNNNNNCTCC	6 cut(s)	268, 298, 313, 343, 352, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	641, 893
Bse1I	ACTGG	3 cut(s)	488, 745, 1068
Bse21I	CCTNAGG	2 cut(s)	678, 731
BseAI	TCCGGA	1 cut(s)	532
BseDI	CCNNGG	1 cut(s)	712
BseLI	CCNNNNNNNGG	2 cut(s)	641, 893
BseMII	CTCAG	3 cut(s)	278, 692, 852
BseNI	ACTGG	3 cut(s)	488, 745, 1068
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	6 cut(s)	42, 397, 530, 789, 805, 1079
BseYI	CCCAGC	2 cut(s)	704, 828
Bsh1236I	CGCG	1 cut(s)	507
Bsh1285I	CGRYCG	1 cut(s)	1051
BshFI	GGCC	2 cut(s)	710, 983
BsiEI	CGRYCG	1 cut(s)	1051
BsiHKAI	GWGCWC	2 cut(s)	813, 855
BsiSI	CCGG	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	641, 893
BsmAI	GTCTC	1 cut(s)	643
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	710, 983
Bsp119I	TTCGAA	1 cut(s)	39
Bsp120I	GGGCCC	1 cut(s)	708
Bsp1286I	GDGCHC	3 cut(s)	712, 813, 855
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	3 cut(s)	716, 916, 1048
Bsp1720I	GCTNAGC	2 cut(s)	221, 244
BspANI	GGCC	2 cut(s)	710, 983
BspCNI	CTCAG	3 cut(s)	277, 691, 853
BspEI	TCCGGA	1 cut(s)	532
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	709, 710, 718
BspMAI	CTGCAG	1 cut(s)	807
BspPI	GGATC	2 cut(s)	711, 724
BspT104I	TTCGAA	1 cut(s)	39
BsrI	ACTGG	3 cut(s)	488, 745, 1068
BssECI	CCNNGG	1 cut(s)	712
BssMI	GATC	3 cut(s)	716, 916, 1048
BssNAI	GTATAC	1 cut(s)	566
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	712
Bst1107I	GTATAC	1 cut(s)	566
Bst4CI	ACNGT	4 cut(s)	13, 203, 499, 929
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	799
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	540, 700, 1045
BstDEI	CTNAG	6 cut(s)	221, 244, 264, 678, 731, 861
BstFNI	CGCG	1 cut(s)	507
BstH2I	RGCGCY	3 cut(s)	650, 705, 1022
BstHHI	GCGC	6 cut(s)	388, 509, 649, 704, 762, 1021
BstKTI	GATC	3 cut(s)	719, 919, 1051
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	3 cut(s)	716, 916, 1048
BstMCI	CGRYCG	1 cut(s)	1051
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 515, 617, 799, 802, 808, 817, 1040
BstSFI	CTRYAG	2 cut(s)	594, 803
BstSLI	GKGCMC	1 cut(s)	712
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	6 cut(s)	42, 397, 530, 789, 805, 1079
BstV2I	GAAGAC	2 cut(s)	204, 246
BstX2I	RGATCY	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	716
BstZ17I	GTATAC	1 cut(s)	566
Bsu36I	CCTNAGG	2 cut(s)	678, 731
BsuRI	GGCC	2 cut(s)	710, 983
BtgZI	GCGATG	1 cut(s)	1016
BtsI	GCAGTG	2 cut(s)	549, 755
BtsIMutI	CAGTG	4 cut(s)	9, 57, 549, 755
Cac8I	GCNNGC	3 cut(s)	540, 700, 1045
CaiI	CAGNNNCTG	2 cut(s)	136, 593
CfoI	GCGC	6 cut(s)	388, 509, 649, 704, 762, 1021
Cfr13I	GGNCC	3 cut(s)	708, 709, 929
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	357, 432, 556
CspCI	CAANNNNNGTGG	2 cut(s)	771, 806
CviAII	CATG	4 cut(s)	120, 217, 799, 950
CviQI	GTAC	3 cut(s)	357, 432, 556
DdeI	CTNAG	6 cut(s)	221, 244, 264, 678, 731, 861
DpnI	GATC	3 cut(s)	718, 918, 1050
DpnII	GATC	3 cut(s)	716, 916, 1048
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Ecl136II	GAGCTC	1 cut(s)	811
Eco130I	CCWWGG	1 cut(s)	712
Eco24I	GRGCYC	2 cut(s)	712, 813
Eco47I	GGWCC	1 cut(s)	929
Eco47III	AGCGCT	1 cut(s)	1020
Eco53kI	GAGCTC	1 cut(s)	811
Eco57I	CTGAAG	4 cut(s)	222, 345, 854, 921
Eco81I	CCTNAGG	2 cut(s)	678, 731
EcoICRI	GAGCTC	1 cut(s)	811
EcoO109I	RGGNCCY	2 cut(s)	708, 709
EcoT14I	CCWWGG	1 cut(s)	712
EcoT38I	GRGCYC	2 cut(s)	712, 813
ErhI	CCWWGG	1 cut(s)	712
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	4 cut(s)	123, 220, 802, 953
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	4 cut(s)	119, 216, 798, 949
FbaI	TGATCA	1 cut(s)	916
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	6 cut(s)	31, 411, 519, 794, 803, 1068
FriOI	GRGCYC	2 cut(s)	712, 813
Fsp4HI	GCNGC	6 cut(s)	31, 411, 519, 794, 803, 1068
FspAI	RTGCGCAY	1 cut(s)	387
FspBI	CTAG	2 cut(s)	381, 561
FspI	TGCGCA	1 cut(s)	387
GlaI	GCGC	6 cut(s)	387, 508, 648, 703, 761, 1020
GluI	GCNGC	6 cut(s)	31, 411, 519, 794, 803, 1068
GsaI	CCCAGC	2 cut(s)	708, 832
GsuI	CTGGAG	2 cut(s)	354, 663
HaeII	RGCGCY	3 cut(s)	650, 705, 1022
HaeIII	GGCC	2 cut(s)	710, 983
HapII	CCGG	1 cut(s)	533
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	6 cut(s)	388, 509, 649, 704, 762, 1021
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	4 cut(s)	123, 220, 802, 953
Hin6I	GCGC	6 cut(s)	386, 507, 647, 702, 760, 1019
HinP1I	GCGC	6 cut(s)	386, 507, 647, 702, 760, 1019
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	533
HphI	GGTGA	1 cut(s)	917
Hpy166II	GTNNAC	3 cut(s)	125, 547, 566
Hpy188I	TCNGA	2 cut(s)	815, 901
Hpy188III	TCNNGA	8 cut(s)	157, 371, 440, 533, 642, 680, 848, 932
Hpy8I	GTNNAC	3 cut(s)	125, 547, 566
HpyAV	CCTTC	3 cut(s)	145, 878, 896
HpyCH4III	ACNGT	4 cut(s)	13, 203, 499, 929
HpyCH4V	TGCA	6 cut(s)	352, 587, 611, 772, 793, 805
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 515, 617, 799, 802, 808, 817, 1040
HpyF3I	CTNAG	6 cut(s)	221, 244, 264, 678, 731, 861
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	123, 220, 802, 953
HspAI	GCGC	6 cut(s)	386, 507, 647, 702, 760, 1019
Kpn2I	TCCGGA	1 cut(s)	532
Ksp22I	TGATCA	1 cut(s)	916
Kzo9I	GATC	3 cut(s)	716, 916, 1048
LmnI	GCTCC	7 cut(s)	334, 373, 535, 644, 664, 808, 850
Lsp1109I	GCAGC	6 cut(s)	42, 397, 530, 789, 805, 1079
MaeI	CTAG	2 cut(s)	381, 561
MaeIII	GTNAC	5 cut(s)	132, 190, 499, 905, 961
MalI	GATC	3 cut(s)	718, 918, 1050
MboI	GATC	3 cut(s)	716, 916, 1048
MboII	GAAGA	6 cut(s)	91, 94, 209, 246, 249, 252
MflI	RGATCY	1 cut(s)	716
MhlI	GDGCHC	3 cut(s)	712, 813, 855
MluCI	AATT	6 cut(s)	42, 112, 307, 601, 786, 843
MroI	TCCGGA	1 cut(s)	532
MseI	TTAA	3 cut(s)	836, 842, 875
MspI	CCGG	1 cut(s)	533
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	8 cut(s)	71, 515, 617, 799, 802, 808, 817, 1040
NdeII	GATC	3 cut(s)	716, 916, 1048
NlaIII	CATG	4 cut(s)	123, 220, 802, 953
NlaIV	GGNNCC	3 cut(s)	709, 710, 718
NmeAIII	GCCGAG	1 cut(s)	997
NmuCI	GTSAC	2 cut(s)	190, 905
NsbI	TGCGCA	1 cut(s)	387
NspV	TTCGAA	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	6 cut(s)	32, 412, 520, 795, 804, 1069
Ple19I	CGATCG	1 cut(s)	1051
PshBI	ATTAAT	1 cut(s)	842
PsiI	TTATAA	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	813
PspFI	CCCAGC	2 cut(s)	704, 828
PspN4I	GGNNCC	3 cut(s)	709, 710, 718
PspOMI	GGGCCC	1 cut(s)	708
PspPI	GGNCC	3 cut(s)	708, 709, 929
PstI	CTGCAG	1 cut(s)	807
PstNI	CAGNNNCTG	2 cut(s)	136, 593
PsuI	RGATCY	1 cut(s)	716
PvuI	CGATCG	1 cut(s)	1051
RgaI	GCGATCGC	1 cut(s)	1051
RsaI	GTAC	3 cut(s)	358, 433, 557
RsaNI	GTAC	3 cut(s)	357, 432, 556
SacI	GAGCTC	1 cut(s)	813
SaqAI	TTAA	3 cut(s)	836, 842, 875
SatI	GCNGC	6 cut(s)	31, 411, 519, 794, 803, 1068
Sau3AI	GATC	3 cut(s)	716, 916, 1048
Sau96I	GGNCC	3 cut(s)	708, 709, 929
SduI	GDGCHC	3 cut(s)	712, 813, 855
SfaAI	GCGATCGC	1 cut(s)	1051
SfcI	CTRYAG	2 cut(s)	594, 803
SfuI	TTCGAA	1 cut(s)	39
SgfI	GCGATCGC	1 cut(s)	1051
SinI	GGWCC	1 cut(s)	929
SmlI	CTYRAG	2 cut(s)	440, 995
SmoI	CTYRAG	2 cut(s)	440, 995
Sse9I	AATT	6 cut(s)	42, 112, 307, 601, 786, 843
SspMI	CTAG	2 cut(s)	381, 561
SstI	GAGCTC	1 cut(s)	813
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	4 cut(s)	13, 203, 499, 929
TaqI	TCGA	4 cut(s)	39, 723, 764, 1101
TasI	AATT	6 cut(s)	42, 112, 307, 601, 786, 843
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	836, 842, 875
Tru9I	TTAA	3 cut(s)	836, 842, 875
TscAI	CASTG	4 cut(s)	16, 64, 549, 762
TseFI	GTSAC	2 cut(s)	190, 905
TseI	GCWGC	6 cut(s)	30, 410, 518, 793, 802, 1067
Tsp45I	GTSAC	2 cut(s)	190, 905
TspDTI	ATGAA	2 cut(s)	17, 897
TspRI	CASTG	4 cut(s)	16, 64, 549, 762
VpaK11BI	GGWCC	1 cut(s)	929
VspI	ATTAAT	1 cut(s)	842
XapI	RAATTY	2 cut(s)	307, 786
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1078
XmiI	GTMKAC	1 cut(s)	565
XspI	CTAG	2 cut(s)	381, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.