Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

14401502 .. 14414030

Gene Structure 12529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG084200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCTGGTGGACCTGGATTTGCTTCTGGACGGCTGATATGGGCTGCATCTGGAGAGCAAGCAGTGGACTACTTGTATTCTAGTATTCCAGAAACAGCAGAAGTTGCAGTGCCTGTGGCTCATTTCCCTGCAAGTCAGGCAACTGAAACAGGCATAGCCAATGCTCCACCTATCTCTGGAGCACCTAATTCAGGTCCCTTGAATATGTTTCCGCAGGAAGCACTGTCCGGTGCTGGTGCTGGTGCTGGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATTTCCAAATATTGCGCTCAATGTTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGACAGCAAAACCCACAGCTTTTAAGATTAATTCAGGAGCACCATGCCGAGTTCCTTCAGTTAATAAATGAACCTCTTGAGGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

146

Amino Acids

15.37

Weight (kDa)

4.67

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XPC-binding	PF09280	88 - 142	3.9e-19	XPC-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	2 cut(s)	252, 265
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	392
AfiI	CCNNNNNNNGG	3 cut(s)	176, 191, 431
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw21I	GWGCWC	3 cut(s)	184, 253, 393
Alw44I	GTGCAC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	252, 265
AlwNI	CAGNNNCTG	1 cut(s)	113
ApaLI	GTGCAC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	44, 340
ApoI	RAATTY	1 cut(s)	324
AseI	ATTAAT	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	11, 194
AvaII	GGWCC	2 cut(s)	11, 194
BaeGI	GKGCMC	1 cut(s)	253
BamHI	GGATCC	1 cut(s)	257
Bbv12I	GWGCWC	3 cut(s)	184, 253, 393
BbvI	GCAGC	2 cut(s)	31, 327
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	15
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	341
BisI	GCNGC	2 cut(s)	45, 341
BlsI	GCNGC	2 cut(s)	46, 342
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	2 cut(s)	11, 194
BmgT120I	GGNCC	2 cut(s)	11, 194
BmiI	GGNNCC	2 cut(s)	196, 259
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	56
BpmI	CTGGAG	2 cut(s)	72, 198
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 191, 431
BseBI	CCWGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	176, 191, 431
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	2 cut(s)	31, 327
BsiHKAI	GWGCWC	3 cut(s)	184, 253, 393
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	3 cut(s)	176, 191, 431
BsmFI	GGGAC	1 cut(s)	180
Bsp1286I	GDGCHC	3 cut(s)	184, 253, 393
Bsp143I	GATC	1 cut(s)	257
BspACI	CCGC	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	196, 259
BspMAI	CTGCAG	1 cut(s)	345
BspPI	GGATC	2 cut(s)	252, 265
BssMI	GATC	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	272
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 137, 340
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	341
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	31, 327
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BtsI	GCAGTG	2 cut(s)	69, 114
BtsIMutI	CAGTG	3 cut(s)	69, 114, 221
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	113
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	11, 194
CviAII	CATG	2 cut(s)	337, 395
CviJI	RGCY	7 cut(s)	34, 44, 119, 158, 314, 334, 370
CviKI_1	RGCY	7 cut(s)	34, 44, 119, 158, 314, 334, 370
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	11, 194
Eco57I	CTGAAG	1 cut(s)	392
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	340, 398
FaiI	YATR	5 cut(s)	40, 155, 206, 338, 396
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	2 cut(s)	336, 394
Fnu4HI	GCNGC	2 cut(s)	45, 341
Fsp4HI	GCNGC	2 cut(s)	45, 341
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	2 cut(s)	45, 341
GsuI	CTGGAG	2 cut(s)	72, 198
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	340, 398
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HpaII	CCGG	1 cut(s)	228
Hpy166II	GTNNAC	3 cut(s)	11, 67, 251
Hpy188III	TCNNGA	6 cut(s)	27, 51, 89, 177, 386, 428
Hpy8I	GTNNAC	3 cut(s)	11, 67, 251
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4V	TGCA	5 cut(s)	47, 107, 131, 251, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 137, 340
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	340, 398
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	257
LmnI	GCTCC	3 cut(s)	169, 179, 388
Lsp1109I	GCAGC	2 cut(s)	31, 327
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MflI	RGATCY	1 cut(s)	257
MhlI	GDGCHC	3 cut(s)	184, 253, 393
MluCI	AATT	3 cut(s)	187, 324, 381
MnlI	CCTC	3 cut(s)	272, 424, 435
MseI	TTAA	4 cut(s)	374, 380, 413, 439
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	104, 137, 340
NdeII	GATC	1 cut(s)	257
NlaIII	CATG	2 cut(s)	340, 398
NlaIV	GGNNCC	2 cut(s)	196, 259
NmeAIII	GCCGAG	1 cut(s)	424
PkrI	GCNGC	2 cut(s)	46, 342
PpuMI	RGGWCCY	1 cut(s)	194
PshBI	ATTAAT	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	196, 259
PspPI	GGNCC	2 cut(s)	11, 194
PspPPI	RGGWCCY	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	257
SaqAI	TTAA	4 cut(s)	374, 380, 413, 439
SatI	GCNGC	2 cut(s)	45, 341
Sau3AI	GATC	1 cut(s)	257
Sau96I	GGNCC	2 cut(s)	11, 194
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	3 cut(s)	184, 253, 393
SetI	ASST	6 cut(s)	16, 172, 187, 196, 372, 427
SfaNI	GCATC	1 cut(s)	56
SfcI	CTRYAG	1 cut(s)	341
SinI	GGWCC	2 cut(s)	11, 194
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	3 cut(s)	187, 324, 381
SsiI	CCGC	1 cut(s)	212
SspI	AATATT	1 cut(s)	294
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	264
TasI	AATT	3 cut(s)	187, 324, 381
Tru1I	TTAA	4 cut(s)	374, 380, 413, 439
Tru9I	TTAA	4 cut(s)	374, 380, 413, 439
TscAI	CASTG	3 cut(s)	69, 114, 228
TseI	GCWGC	2 cut(s)	44, 340
TspDTI	ATGAA	1 cut(s)	435
TspRI	CASTG	3 cut(s)	69, 114, 228
VneI	GTGCAC	1 cut(s)	249
VpaK11BI	GGWCC	2 cut(s)	11, 194
VspI	ATTAAT	1 cut(s)	380
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	324
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.