Rh5AG270100

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001350
Physical Location & Seq
Forward (+)
35764286 .. 35777017
12732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG270100.1

Sequence Viewer

Length: 231 bp
ATGGTTATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCACTTCAAGCGGCTTTTAACAACCCAGATGTTGTTCAGAGTATTCCAGAAACAGCGGAAGTTGCAGTGCATGTGGCTCATTTCCCTGCAAGTCAGGCAACCGAAACAGGCATAGCCAATGCTCCACCTATCTCCGGAGCACCTAATTCAGGTCCCCTGAATATGTTTCCGCAGAGGGTTCTGTAG

Protein Analysis

76

Amino Acids

7.95

Weight (kDa)

4.97

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 179
AciI CCGC 3 cut(s) 56, 101, 215
AcvI CACGTG 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 179, 194
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 1 cut(s) 53
Alw21I GWGCWC 2 cut(s) 49, 187
Alw44I GTGCAC 1 cut(s) 45
Aor13HI TCCGGA 1 cut(s) 179
ApaLI GTGCAC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 197
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 49
BbrPI CACGTG 1 cut(s) 44
Bbv12I GWGCWC 2 cut(s) 49, 187
BfmI CTRYAG 1 cut(s) 227
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 199
BsaAI YACGTR 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 194
BseAI TCCGGA 1 cut(s) 179
BseLI CCNNNNNNNGG 2 cut(s) 179, 194
BseSI GKGCMC 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 49, 187
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 2 cut(s) 38, 183
BslI CCNNNNNNNGG 2 cut(s) 179, 194
BsmFI GGGAC 2 cut(s) 38, 183
Bsp1286I GDGCHC 2 cut(s) 49, 187
Bsp13I TCCGGA 1 cut(s) 179
BspACI CCGC 3 cut(s) 56, 101, 215
BspEI TCCGGA 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 37
BstBAI YACGTR 1 cut(s) 44
BstENI CCTNNNNNAGG 1 cut(s) 192
BstMWI GCNNNNNNNGC 3 cut(s) 53, 107, 140
BstNSI RCATGY 1 cut(s) 119
BstSFI CTRYAG 1 cut(s) 227
BstSLI GKGCMC 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 197
CviAII CATG 1 cut(s) 116
CviJI RGCY 3 cut(s) 59, 122, 161
CviKI_1 RGCY 3 cut(s) 59, 122, 161
Eco47I GGWCC 1 cut(s) 197
Eco72I CACGTG 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 197
FaeI CATG 1 cut(s) 119
FaiI YATR 4 cut(s) 8, 117, 158, 209
FaqI GGGAC 2 cut(s) 38, 183
FatI CATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
HapII CCGG 1 cut(s) 180
Hin1II CATG 1 cut(s) 119
HpaII CCGG 1 cut(s) 180
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 92, 180
Hpy8I GTNNAC 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 47, 110, 115, 134
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 107, 140
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 179
LmnI GCTCC 2 cut(s) 172, 182
LpnPI CCDG 8 cut(s) 84, 105, 125, 138, 144, 180, 193, 215
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 49, 187
MluCI AATT 2 cut(s) 19, 190
MnlI CCTC 1 cut(s) 213
MroI TCCGGA 1 cut(s) 179
MseI TTAA 1 cut(s) 63
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 53, 107, 140
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 1 cut(s) 199
NspI RCATGY 1 cut(s) 119
PkrI GCNGC 1 cut(s) 58
PmaCI CACGTG 1 cut(s) 44
PmlI CACGTG 1 cut(s) 44
Ppu21I YACGTR 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 197
PspCI CACGTG 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 197
PspPPI RGGWCCY 1 cut(s) 197
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 197
SduI GDGCHC 2 cut(s) 49, 187
SetI ASST 4 cut(s) 46, 175, 190, 199
SfcI CTRYAG 1 cut(s) 227
SinI GGWCC 1 cut(s) 197
Sse9I AATT 2 cut(s) 19, 190
SsiI CCGC 3 cut(s) 56, 101, 215
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 46
TasI AATT 2 cut(s) 19, 190
TauI GCSGC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 117
TspRI CASTG 1 cut(s) 117
VneI GTGCAC 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 192
XceI RCATGY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.