Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

9183231 .. 9185790

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0107700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAGTGCTCTTTCGAGCTCCTTCGTTTCACTTCAGAATCACAAGACCCACTTCTTGACTGGTTCTTCTTCGAAGCCAGTGAACCATTGTATTTTAAACGTTACGCCCAGTGAGCTTACATCAAACAAAAGGCCACTTGTTGTGCGAGCAGGTGAAAAAAGTACTGCAGGCATCTTCGTTGGTGGATTTGTGTTGGGGGGCATAATTGTTGGAGCATTAGGCTGCGTGTATGCACCTCAGATAAGCAAGGCACTTGCAGTAGCTGGATCAGATAGAAAAGAGTTGATGAAGAAGCTGCCAAAATTCATATATGATGAAGAAAAAGCTCTTGAGAAAACCCGCAAAATACTGGCTGAGAAGATTTCACAGCTAAATTCTGCCATAGATGATGTTTCTGCTCAGCTGCATGCAGATGATGCCCCCCCAAATGGAGTTCCAGTATCTTCAGATGAAATTGAAGCTTCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005730 GO:0005737 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009888 GO:0010374 GO:0010375 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0090558 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

156

Amino Acids

16.52

Weight (kDa)

7.79

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AciI	CCGC	1 cut(s)	340
AclI	AACGTT	1 cut(s)	99
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	2 cut(s)	302, 373
AcuI	CTGAAG	2 cut(s)	17, 429
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	458
AluBI	AGCT	8 cut(s)	18, 115, 263, 295, 326, 370, 403, 461
AluI	AGCT	8 cut(s)	18, 115, 263, 295, 326, 370, 403, 461
Alw21I	GWGCWC	2 cut(s)	10, 20
AlwI	GGATC	1 cut(s)	274
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	3 cut(s)	222, 295, 403
ApoI	RAATTY	2 cut(s)	302, 373
AsuHPI	GGTGA	1 cut(s)	164
AsuII	TTCGAA	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	10, 20
BbvI	GCAGC	3 cut(s)	209, 282, 390
BfmI	CTRYAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	223, 296, 404
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	3 cut(s)	224, 297, 405
BmcAI	AGTACT	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	180, 406
BmuI	ACTGGG	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	5 cut(s)	64, 77, 108, 354, 437
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	3 cut(s)	251, 345, 413
BseNI	ACTGG	5 cut(s)	64, 77, 108, 354, 437
BseXI	GCAGC	3 cut(s)	209, 282, 390
BshFI	GGCC	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	10, 20
BslI	CCNNNNNNNGG	1 cut(s)	428
BsnI	GGCC	1 cut(s)	133
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	10, 20
Bsp143I	GATC	1 cut(s)	266
Bsp1720I	GCTNAGC	1 cut(s)	399
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	3 cut(s)	250, 346, 412
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	274
BspT104I	TTCGAA	1 cut(s)	71
BsrI	ACTGG	5 cut(s)	64, 77, 108, 354, 437
BssMI	GATC	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	3 cut(s)	147, 169, 408
BstDEI	CTNAG	3 cut(s)	237, 354, 399
BstKTI	GATC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 416
BstNSI	RCATGY	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	3 cut(s)	209, 282, 390
BsuRI	GGCC	1 cut(s)	133
BtsIMutI	CAGTG	2 cut(s)	84, 115
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	147, 169, 408
CaiI	CAGNNNCTG	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	1 cut(s)	407
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	3 cut(s)	237, 354, 399
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
DraI	TTTAAA	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	17, 429
EcoICRI	GAGCTC	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	1 cut(s)	410
FaiI	YATR	9 cut(s)	203, 231, 308, 310, 312, 383, 408, 467, 469
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	1 cut(s)	406
FauI	CCCGC	1 cut(s)	347
FauNDI	CATATG	1 cut(s)	467
Fnu4HI	GCNGC	3 cut(s)	223, 296, 404
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	223, 296, 404
GluI	GCNGC	3 cut(s)	223, 296, 404
HaeIII	GGCC	1 cut(s)	133
Hin1II	CATG	1 cut(s)	410
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	1 cut(s)	37
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	4 cut(s)	36, 240, 271, 448
Hpy188III	TCNNGA	2 cut(s)	55, 329
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	167, 233, 257, 406, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 416
HpyF3I	CTNAG	3 cut(s)	237, 354, 399
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	410
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	2 cut(s)	23, 212
LpnPI	CCDG	8 cut(s)	45, 90, 121, 135, 153, 249, 335, 450
Lsp1109I	GCAGC	3 cut(s)	209, 282, 390
LweI	GCATC	2 cut(s)	180, 406
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	7 cut(s)	57, 60, 166, 301, 329, 370, 435
MhlI	GDGCHC	2 cut(s)	10, 20
MluCI	AATT	4 cut(s)	204, 302, 373, 453
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	1 cut(s)	246
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	403
MwoI	GCNNNNNNNGC	2 cut(s)	112, 416
NdeI	CATATG	1 cut(s)	467
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	410
NspI	RCATGY	1 cut(s)	410
NspV	TTCGAA	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	410
PaqCI	CACCTGC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	224, 297, 405
Psp124BI	GAGCTC	1 cut(s)	20
Psp1406I	AACGTT	1 cut(s)	99
PstI	CTGCAG	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	3 cut(s)	223, 296, 404
Sau3AI	GATC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	10, 20
SfaNI	GCATC	2 cut(s)	180, 406
SfcI	CTRYAG	1 cut(s)	165
SfuI	TTCGAA	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SphI	GCATGC	1 cut(s)	410
Sse9I	AATT	4 cut(s)	204, 302, 373, 453
SsiI	CCGC	1 cut(s)	340
SstI	GAGCTC	1 cut(s)	20
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	14, 71
TasI	AATT	4 cut(s)	204, 302, 373, 453
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	2 cut(s)	84, 115
TseI	GCWGC	3 cut(s)	222, 295, 403
TspDTI	ATGAA	4 cut(s)	295, 302, 330, 465
TspRI	CASTG	2 cut(s)	84, 115
XapI	RAATTY	2 cut(s)	302, 373
XceI	RCATGY	1 cut(s)	410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.