Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

33471090 .. 33473599

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0299900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTTGAAGGCTTAAGGGTTAAGGTTATGGAGAATATGTCTGAGAGGAAGGTTGCATGCAAGAGGTGGGCCACTATTTTGTGTCCTCCAATGGAGGCTTTGTTGAAGAAATCAATGGATATTGGGCGGCATTGGGTTGTTAGTATGTCTAGTCAGACTGTTTTTGAAGTTCATTCAGATAAATCAGTGGCGGTTGATCTTGGGAACAGCACTTGCTCTTGCCGTCAATGGCAAATTAATTCATTCCCATGTTCACATGCTCTTGCTGCAATCCAAAAGGTTGGAGTGGAACCTGTGTATAGTTACATTGAGCCATTTTACACCTGTCAAAGCTACATGGATTCCTACGCGCATGGTATTCATCCTATACCAAATATGGAGAAGTTTTATGAAGATGCAGCTAGTTTAACTTCTGTTGTTAAGCCTCCATTGGTTAGGAGGCCATCCGGCCAGCCAAAATCTGTTCGAATGAAGTCTGCAGCAGAAGGAGGCACGAGGAGGCGTATCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

170

Amino Acids

19.15

Weight (kDa)

9.2

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	65 - 94	2.9e-10	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	350
AciI	CCGC	2 cut(s)	127, 191
AcoI	YGGCCR	1 cut(s)	448
AflII	CTTAAG	1 cut(s)	13
AgsI	TTSAA	3 cut(s)	8, 106, 167
AluBI	AGCT	2 cut(s)	333, 401
AluI	AGCT	2 cut(s)	333, 401
AoxI	GGCC	3 cut(s)	69, 440, 448
ApeKI	GCWGC	3 cut(s)	266, 398, 479
AseI	ATTAAT	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	69
AsuII	TTCGAA	1 cut(s)	466
BauI	CACGAG	1 cut(s)	493
BbvI	GCAGC	3 cut(s)	253, 410, 491
BccI	CCATC	1 cut(s)	451
BceAI	ACGGC	1 cut(s)	207
BfaI	CTAG	2 cut(s)	150, 402
BfmI	CTRYAG	1 cut(s)	477
BfrI	CTTAAG	1 cut(s)	13
BisI	GCNGC	4 cut(s)	128, 267, 399, 480
BlsI	GCNGC	4 cut(s)	129, 268, 400, 481
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	291
BmsI	GCATC	1 cut(s)	385
Bpu14I	TTCGAA	1 cut(s)	466
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 86, 116
BseGI	GGATG	2 cut(s)	361, 443
BseMII	CTCAG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	511
BseXI	GCAGC	3 cut(s)	253, 410, 491
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	3 cut(s)	71, 442, 450
BsiSI	CCGG	1 cut(s)	447
BsnI	GGCC	3 cut(s)	71, 442, 450
Bsp119I	TTCGAA	1 cut(s)	466
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	2 cut(s)	127, 191
BspANI	GGCC	3 cut(s)	71, 442, 450
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	481
BspT104I	TTCGAA	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	13
BssMI	GATC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	493
Bst2BI	CACGAG	1 cut(s)	493
Bst4CI	ACNGT	1 cut(s)	160
BstAFI	CTTAAG	1 cut(s)	13
BstBI	TTCGAA	1 cut(s)	466
BstC8I	GCNNGC	2 cut(s)	58, 452
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	361, 443
BstFNI	CGCG	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNSI	RCATGY	2 cut(s)	60, 260
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	253, 410, 491
BstXI	CCANNNNNNTGG	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	71, 442, 450
BtsCI	GGATG	2 cut(s)	361, 443
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	58, 452
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	69
CviAII	CATG	5 cut(s)	57, 249, 257, 337, 353
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	448
FaeI	CATG	5 cut(s)	60, 252, 260, 340, 356
FatI	CATG	5 cut(s)	56, 248, 256, 336, 352
Fnu4HI	GCNGC	4 cut(s)	128, 267, 399, 480
FokI	GGATG	2 cut(s)	348, 430
Fsp4HI	GCNGC	4 cut(s)	128, 267, 399, 480
FspBI	CTAG	2 cut(s)	150, 402
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	4 cut(s)	128, 267, 399, 480
HaeIII	GGCC	3 cut(s)	71, 442, 450
HapII	CCGG	1 cut(s)	447
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	5 cut(s)	60, 252, 260, 340, 356
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	447
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	43, 156, 178
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	43, 479
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	5 cut(s)	56, 60, 269, 398, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	5 cut(s)	60, 252, 260, 340, 356
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	306, 337, 460, 464
Lsp1109I	GCAGC	3 cut(s)	253, 410, 491
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	2 cut(s)	150, 402
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	118, 404
MluCI	AATT	3 cut(s)	234, 238, 508
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	9 cut(s)	39, 57, 88, 96, 432, 435, 482, 489, 492
MseI	TTAA	6 cut(s)	14, 21, 237, 407, 420, 511
MslI	CAYNNNNRTG	1 cut(s)	247
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	5 cut(s)	60, 252, 260, 340, 356
NlaIV	GGNNCC	1 cut(s)	291
NspI	RCATGY	2 cut(s)	60, 260
NspV	TTCGAA	1 cut(s)	466
PaeI	GCATGC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	129, 268, 400, 481
PshBI	ATTAAT	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	69
PstI	CTGCAG	1 cut(s)	481
RseI	CAYNNNNRTG	1 cut(s)	247
SaqAI	TTAA	6 cut(s)	14, 21, 237, 407, 420, 511
SatI	GCNGC	4 cut(s)	128, 267, 399, 480
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	69
SetI	ASST	8 cut(s)	27, 54, 68, 282, 295, 326, 335, 403
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	477
SfuI	TTCGAA	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SphI	GCATGC	1 cut(s)	60
Sse9I	AATT	3 cut(s)	234, 238, 508
SsiI	CCGC	2 cut(s)	127, 191
SspMI	CTAG	2 cut(s)	150, 402
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	466
TasI	AATT	3 cut(s)	234, 238, 508
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	6 cut(s)	14, 21, 237, 407, 420, 511
Tru9I	TTAA	6 cut(s)	14, 21, 237, 407, 420, 511
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	3 cut(s)	266, 398, 479
TspDTI	ATGAA	5 cut(s)	161, 231, 350, 405, 485
TspRI	CASTG	1 cut(s)	192
Vha464I	CTTAAG	1 cut(s)	13
VspI	ATTAAT	1 cut(s)	237
XceI	RCATGY	2 cut(s)	60, 260
XspI	CTAG	2 cut(s)	150, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.