Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

43147480 .. 43149387

Gene Structure 1908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG341300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGATATGGGTGGTGGAAATTGGCACAGAGAAACAGTTACACGTGCACTTCGAGCGGCTTTTAACAACCCAGATGTTGTTCAGAGTATTCCAGAAACAGTGGAAGTTGCAGTGCCTGTGACTCATTTCCCTGTAAGTCAGGCAACAGAAACAGGCATAACCAATGCTCCACCTATCTCCGGAGCAGCTAATTCAGGTCCCCTAAATATGTTTCCGCAGGTAACACTGTCCGGTGCTGGTGCTGGTGCTAGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCAATTCCAAACGTTGCGCTCAATGTTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAGCAAAACCCACAGCTTTTAAGTTTAATTCAGGAGCACCATGCCGAGTTCCTTCAGTTAATAAATAAACCTCTTGCGGGTTCTGAAGGGACCAAAAGGGAGAAAGGGAGCAGGGGTAGAAGCTTGGTATTTTCATATGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

168

Amino Acids

18.1

Weight (kDa)

6.51

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XPC-binding	PF09280	89 - 144	1.3e-21	XPC-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AccBSI	CCGCTC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	3 cut(s)	56, 215, 437
AclI	AACGTT	1 cut(s)	299
AclWI	GGATC	2 cut(s)	255, 268
AcsI	RAATTY	1 cut(s)	330
AcuI	CTGAAG	2 cut(s)	398, 465
AcvI	CACGTG	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	179, 437
AflIII	ACRYGT	1 cut(s)	41
AluBI	AGCT	3 cut(s)	188, 376, 483
AluI	AGCT	3 cut(s)	188, 376, 483
Alw21I	GWGCWC	3 cut(s)	49, 256, 399
Alw44I	GTGCAC	2 cut(s)	45, 252
AlwI	GGATC	2 cut(s)	255, 268
AlwNI	CAGNNNCTG	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	179
ApaLI	GTGCAC	2 cut(s)	45, 252
ApeKI	GCWGC	2 cut(s)	185, 346
ApoI	RAATTY	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	197, 450
AvaII	GGWCC	2 cut(s)	197, 450
BaeGI	GKGCMC	2 cut(s)	49, 256
BamHI	GGATCC	1 cut(s)	260
BbrPI	CACGTG	1 cut(s)	44
Bbv12I	GWGCWC	3 cut(s)	49, 256, 399
BbvI	GCAGC	2 cut(s)	197, 333
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	3 cut(s)	57, 186, 347
BlsI	GCNGC	3 cut(s)	58, 187, 348
Bme18I	GGWCC	2 cut(s)	197, 450
BmgT120I	GGNCC	2 cut(s)	197, 450
BmiI	GGNNCC	3 cut(s)	199, 262, 451
BsaAI	YACGTR	1 cut(s)	44
BsaWI	WCCGGW	2 cut(s)	179, 230
BsaXI	ACNNNNNCTCC	4 cut(s)	151, 181, 460, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 437
BseAI	TCCGGA	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	179, 437
BseSI	GKGCMC	2 cut(s)	49, 256
BseXI	GCAGC	2 cut(s)	197, 333
BsiHKAI	GWGCWC	3 cut(s)	49, 256, 399
BsiSI	CCGG	2 cut(s)	180, 231
BslFI	GGGAC	2 cut(s)	183, 463
BslI	CCNNNNNNNGG	2 cut(s)	179, 437
BsmFI	GGGAC	2 cut(s)	183, 463
Bsp1286I	GDGCHC	3 cut(s)	49, 256, 399
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	3 cut(s)	56, 215, 437
BspEI	TCCGGA	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	199, 262, 451
BspMAI	CTGCAG	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	2 cut(s)	255, 268
BsrBI	CCGCTC	1 cut(s)	56
BssMI	GATC	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	37, 100, 228
BstBAI	YACGTR	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 346
BstSFI	CTRYAG	1 cut(s)	347
BstSLI	GKGCMC	2 cut(s)	49, 256
BstV1I	GCAGC	2 cut(s)	197, 333
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	3 cut(s)	105, 117, 224
BveI	ACCTGC	1 cut(s)	208
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	197, 450
CviAII	CATG	2 cut(s)	343, 401
CviJI	RGCY	6 cut(s)	59, 188, 320, 340, 376, 483
CviKI_1	RGCY	6 cut(s)	59, 188, 320, 340, 376, 483
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
Eco47I	GGWCC	2 cut(s)	197, 450
Eco57I	CTGAAG	2 cut(s)	398, 465
Eco72I	CACGTG	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	197
FaeI	CATG	2 cut(s)	346, 404
FaiI	YATR	7 cut(s)	8, 158, 209, 344, 402, 496, 498
FaqI	GGGAC	2 cut(s)	183, 463
FatI	CATG	2 cut(s)	342, 400
FauI	CCCGC	1 cut(s)	430
FauNDI	CATATG	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	57, 186, 347
Fsp4HI	GCNGC	3 cut(s)	57, 186, 347
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	3 cut(s)	57, 186, 347
HapII	CCGG	2 cut(s)	180, 231
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	346, 404
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	481
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	180, 231
Hpy166II	GTNNAC	2 cut(s)	47, 254
Hpy188I	TCNGA	2 cut(s)	84, 445
Hpy188III	TCNNGA	3 cut(s)	92, 180, 392
Hpy8I	GTNNAC	2 cut(s)	47, 254
HpyAV	CCTTC	2 cut(s)	422, 440
HpyCH4III	ACNGT	3 cut(s)	37, 100, 228
HpyCH4IV	ACGT	2 cut(s)	43, 299
HpyCH4V	TGCA	4 cut(s)	47, 110, 254, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 346
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	2 cut(s)	43, 299
Hsp92II	CATG	2 cut(s)	346, 404
HspAI	GCGC	1 cut(s)	304
Kpn2I	TCCGGA	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	4 cut(s)	172, 182, 394, 468
Lsp1109I	GCAGC	2 cut(s)	197, 333
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	2 cut(s)	43, 299
MaeIII	GTNAC	4 cut(s)	37, 118, 220, 312
MalI	GATC	1 cut(s)	262
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	1 cut(s)	260
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	3 cut(s)	49, 256, 399
MluCI	AATT	5 cut(s)	19, 190, 290, 330, 387
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	2 cut(s)	275, 441
MroI	TCCGGA	1 cut(s)	179
MseI	TTAA	4 cut(s)	63, 380, 386, 419
MspI	CCGG	2 cut(s)	180, 231
MwoI	GCNNNNNNNGC	2 cut(s)	53, 346
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	346, 404
NlaIV	GGNNCC	3 cut(s)	199, 262, 451
NmeAIII	GCCGAG	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	58, 187, 348
PleI	GAGTC	1 cut(s)	115
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	197
Psp1406I	AACGTT	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	197
PspCI	CACGTG	1 cut(s)	44
PspN4I	GGNNCC	3 cut(s)	199, 262, 451
PspPI	GGNCC	2 cut(s)	197, 450
PspPPI	RGGWCCY	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	260
SaqAI	TTAA	4 cut(s)	63, 380, 386, 419
SatI	GCNGC	3 cut(s)	57, 186, 347
Sau3AI	GATC	1 cut(s)	260
Sau96I	GGNCC	2 cut(s)	197, 450
SchI	GAGTC	1 cut(s)	115
SduI	GDGCHC	3 cut(s)	49, 256, 399
SetI	ASST	9 cut(s)	46, 175, 190, 199, 222, 302, 378, 433, 485
SfcI	CTRYAG	1 cut(s)	347
SinI	GGWCC	2 cut(s)	197, 450
Sse9I	AATT	5 cut(s)	19, 190, 290, 330, 387
SsiI	CCGC	3 cut(s)	56, 215, 437
SspMI	CTAG	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	37, 100, 228
TaiI	ACGT	2 cut(s)	46, 302
TaqI	TCGA	2 cut(s)	52, 267
TasI	AATT	5 cut(s)	19, 190, 290, 330, 387
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	4 cut(s)	63, 380, 386, 419
Tru9I	TTAA	4 cut(s)	63, 380, 386, 419
TscAI	CASTG	3 cut(s)	105, 117, 231
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	185, 346
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	483
TspRI	CASTG	3 cut(s)	105, 117, 231
VneI	GTGCAC	2 cut(s)	45, 252
VpaK11BI	GGWCC	2 cut(s)	197, 450
XapI	RAATTY	1 cut(s)	330
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.