Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

33473748 .. 33474470

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0300000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTGGACAAAGCCTTTGAGGAAGACAATATAGCAACAAGGAAGATACAGATCTTGCAGAACAAATTGTTGAAGAAGTGGAAAGTTTTTAAAACCATTGAGAAGGAAAAAAAGAACTTGGAGGACGTCATTGAGCAGCAGAGAGAAATGATACGCAATCTGGAAAATGAATTGCTGGAAATGGAAAGAAAGCTACTGGAGAAAGATATGTTGGATTCTCAAGAGGATTTACGGAAAGATGATATAGAAAATAGTAACAGTGATGGTGAGGATGGTGGAGAAGGAACTGATGGTGAAGATGGTGAGGAAGGTGGAGAAGGAGCTGATGGTGAAAATGGTGAGGAAGACGGTGGAGAAGGAGTTGATGGTGAAGATGGTAGAGACGATGATGAAGACAAAGAAGAAGAACCTGAAGTGAGAACAACCAGAAAGAAGCACACATCAACAAGAAAAGATAAAGAAGGCAGGTCTTCTCAGAAACAGGAAGCAAAGAAACAATCAAGGAGAAGGGAAAGGGTGAAAAAATCTGCTGCTGAAGAAGAAGCTGCTGATGAAGAAGCAGAACCTGAAGAAGAACCAATTAAAAAGATGAAGAAAGGGAAGAAGCAAGCTGTAAAGAGAAATTCAATGGTGGATCGAATCAAGAACAAAAAAAGGAAGGCTACTGAAGACAAGGAGTTCACGTATACCACAAAAAGAACAAGGAGCGGCAAGAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

240

Amino Acids

27.79

Weight (kDa)

5.14

Isoelectric Point (pI)

65.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
Acc36I	ACCTGC	1 cut(s)	456
AccBSI	CCGCTC	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	686
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	1 cut(s)	642
AcsI	RAATTY	1 cut(s)	622
AcuI	CTGAAG	4 cut(s)	432, 555, 588, 687
AcyI	GRCGYC	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	73, 627
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	4 cut(s)	193, 323, 545, 611
AluI	AGCT	4 cut(s)	193, 323, 545, 611
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	642
AlwNI	CAGNNNCTG	1 cut(s)	566
ApeKI	GCWGC	3 cut(s)	136, 530, 545
ApoI	RAATTY	1 cut(s)	622
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AsuHPI	GGTGA	7 cut(s)	278, 305, 314, 341, 350, 380, 529
BbsI	GAAGAC	5 cut(s)	30, 351, 399, 462, 675
BbvI	GCAGC	3 cut(s)	148, 517, 532
BccI	CCATC	7 cut(s)	257, 266, 284, 293, 320, 359, 368
BcoDI	GTCTC	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	456
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	4 cut(s)	137, 531, 546, 709
BlsI	GCNGC	4 cut(s)	138, 532, 547, 710
BpiI	GAAGAC	5 cut(s)	30, 351, 399, 462, 675
BpmI	CTGGAG	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	684
BsaBI	GATNNNNATC	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	126
BsaXI	ACNNNNNCTCC	4 cut(s)	345, 375, 668, 698
Bse1I	ACTGG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	50
BseGI	GGATG	1 cut(s)	277
BseJI	GATNNNNATC	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	3 cut(s)	148, 517, 532
BsmAI	GTCTC	1 cut(s)	375
BsmBI	CGTCTC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	51, 634
BspACI	CCGC	1 cut(s)	708
BspCNI	CTCAG	1 cut(s)	487
BspMI	ACCTGC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	642
BsrBI	CCGCTC	1 cut(s)	708
BsrI	ACTGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	51, 634
BssNAI	GTATAC	1 cut(s)	687
BssNI	GRCGYC	1 cut(s)	126
Bst1107I	GTATAC	1 cut(s)	687
Bst4CI	ACNGT	2 cut(s)	260, 350
BstACI	GRCGYC	1 cut(s)	126
BstBAI	YACGTR	1 cut(s)	684
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	2 cut(s)	54, 637
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	2 cut(s)	51, 634
BstV1I	GCAGC	3 cut(s)	148, 517, 532
BstV2I	GAAGAC	5 cut(s)	30, 351, 399, 462, 675
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
BstZ17I	GTATAC	1 cut(s)	687
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	265
BveI	ACCTGC	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	609
CaiI	CAGNNNCTG	1 cut(s)	566
CviJI	RGCY	6 cut(s)	14, 193, 323, 545, 611, 662
CviKI_1	RGCY	6 cut(s)	14, 193, 323, 545, 611, 662
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	2 cut(s)	53, 636
DpnII	GATC	2 cut(s)	51, 634
DraI	TTTAAA	1 cut(s)	91
Eco57I	CTGAAG	4 cut(s)	432, 555, 588, 687
Esp3I	CGTCTC	1 cut(s)	375
FaiI	YATR	4 cut(s)	32, 209, 245, 687
FblI	GTMKAC	1 cut(s)	686
Fnu4HI	GCNGC	4 cut(s)	137, 531, 546, 709
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	4 cut(s)	137, 531, 546, 709
GluI	GCNGC	4 cut(s)	137, 531, 546, 709
GsuI	CTGGAG	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	215, 639
HphI	GGTGA	7 cut(s)	278, 305, 314, 341, 350, 380, 529
Hpy166II	GTNNAC	2 cut(s)	681, 687
Hpy188I	TCNGA	1 cut(s)	477
Hpy188III	TCNNGA	3 cut(s)	161, 221, 643
Hpy8I	GTNNAC	2 cut(s)	681, 687
HpyAV	CCTTC	8 cut(s)	97, 275, 302, 311, 350, 455, 501, 652
HpyCH4III	ACNGT	2 cut(s)	260, 350
HpyCH4IV	ACGT	2 cut(s)	126, 683
HpyCH4V	TGCA	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	2 cut(s)	126, 683
Hsp92I	GRCGYC	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	51, 634
LmnI	GCTCC	2 cut(s)	320, 705
LpnPI	CCDG	8 cut(s)	146, 161, 182, 423, 439, 451, 467, 579
Lsp1109I	GCAGC	3 cut(s)	148, 517, 532
MaeII	ACGT	2 cut(s)	126, 683
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	2 cut(s)	53, 636
MbiI	CCGCTC	1 cut(s)	708
MboI	GATC	2 cut(s)	51, 634
MflI	RGATCY	1 cut(s)	51
MluCI	AATT	4 cut(s)	65, 170, 579, 622
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	7 cut(s)	13, 115, 217, 262, 298, 334, 708
MseI	TTAA	2 cut(s)	90, 582
NdeII	GATC	2 cut(s)	51, 634
PfeI	GAWTC	2 cut(s)	215, 639
PkrI	GCNGC	4 cut(s)	138, 532, 547, 710
Ppu21I	YACGTR	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	90, 582
SatI	GCNGC	4 cut(s)	137, 531, 546, 709
Sau3AI	GATC	2 cut(s)	51, 634
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	4 cut(s)	65, 170, 579, 622
SsiI	CCGC	1 cut(s)	708
TaaI	ACNGT	2 cut(s)	260, 350
TaiI	ACGT	2 cut(s)	129, 686
TaqI	TCGA	1 cut(s)	637
TasI	AATT	4 cut(s)	65, 170, 579, 622
TauI	GCSGC	1 cut(s)	711
TfiI	GAWTC	2 cut(s)	215, 639
Tru1I	TTAA	2 cut(s)	90, 582
Tru9I	TTAA	2 cut(s)	90, 582
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	3 cut(s)	136, 530, 545
TspDTI	ATGAA	4 cut(s)	183, 405, 567, 605
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	686
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.