Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

49751565 .. 49757101

Gene Structure 5537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG359300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAAGCTCACTGTAAAGACCCTCAAGGGCAGCCATTTCGAAATTAGGGTTCAGCCCACTGACACCGTGATGGGTGTTAAGAAGAACATTGAGGATATACAAGGGAAAGATAATTACCCGTGTGGGCAGCAGTTACTGATACACAATGGCAAAGTCTTGAAAGACGAAACTACCTTGGCCGACAACAAGGTCACTGAAGATGGTTTTCTTGTTGTCATGCTTAGTAAGAGTAAAACTACAGGCTTAGCAGGGGCTTCATCTGCTCAGCCTGCTTCTACAATTCCACCTACAACTGCACCAATCACAAATTCTACTACCAGAGCCGAAGCTCCCATACAAGCACCGCCTTCAGAGAGTACCACTCCTGCTTCAGACACTGCTAATGTGCATACTGATACCTATGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAATCTTGATGAGACTATTCAACAGATAATGGATATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCACTTCGAGCGGCTTATAACAACCCAGAGCGAGCAGTGGACTACTTGTATTCTAGTATTCCAGAAACAGCGGAAGTTGCAGTGCCTGTGGCTCATTTCCCTGCAAGTCAGGCAACTGAAACAGGCGTAGCCAATGCTCCACCTGTCTCCGGAGCACCTAATTCAGCTCCCCTGAATATGTTTCCGCAGGAAGCACTGTCCGGTGCTGGTGCTGGTGCTGGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCAGTTCCAAACGTTGCGCTCAATGGTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAGCAAAACCCCCAGCTTTTAAGATTAATTCAGGAGCACCATGCCGAGTTCCTTCAATTAATAAATGAACCTCTTGAGGGTTCTGAAGGTGACATGTTTGAACAGCCTGATCAAGAAATGCCACATGCTATCAATGTAACTCCAGCGGAACAGGAGGCCATTGAACGACTTGAGGCAATGGGATTTGATAGAGCCTTGGTGATTGAGGCCTTTTTGGCATGTGACCGTAATGAAGAGCTGGCAGCCAACTATCTATTGGAGAATGCTGGAGATTTCGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

373

Amino Acids

40.11

Weight (kDa)

4.59

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 74	1.3e-06	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 76	2.9e-15	Ubiquitin family
UBA	PF00627	148 - 185	3.5e-11	UBA/TS-N domain
XPC-binding	PF09280	248 - 303	1.4e-22	XPC-binding domain
UBA	PF00627	329 - 364	2.5e-11	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AasI	GACNNNNNNGTC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	518
AccIII	TCCGGA	1 cut(s)	656
AciI	CCGC	5 cut(s)	344, 518, 578, 692, 983
AclI	AACGTT	1 cut(s)	776
AclWI	GGATC	2 cut(s)	732, 745
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	3 cut(s)	307, 418, 807
AcuI	CTGAAG	4 cut(s)	216, 333, 354, 942
AcvI	CACGTG	1 cut(s)	506
AfaI	GTAC	2 cut(s)	358, 792
AfiI	CCNNNNNNNGG	2 cut(s)	656, 914
AflIII	ACRYGT	2 cut(s)	503, 930
AgsI	TTSAA	5 cut(s)	160, 455, 893, 938, 1001
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	6 cut(s)	7, 329, 410, 674, 853, 1075
AluI	AGCT	6 cut(s)	7, 329, 410, 674, 853, 1075
Alw21I	GWGCWC	4 cut(s)	511, 664, 733, 876
Alw26I	GTCTC	2 cut(s)	440, 658
Alw44I	GTGCAC	2 cut(s)	507, 729
AlwI	GGATC	2 cut(s)	732, 745
AlwNI	CAGNNNCTG	3 cut(s)	136, 377, 593
Aor13HI	TCCGGA	1 cut(s)	656
AoxI	GGCC	3 cut(s)	177, 993, 1044
ApaLI	GTGCAC	2 cut(s)	507, 729
ApeKI	GCWGC	5 cut(s)	30, 127, 410, 823, 1079
ApoI	RAATTY	3 cut(s)	307, 418, 807
AseI	ATTAAT	2 cut(s)	863, 896
AspLEI	GCGC	1 cut(s)	783
AsuHPI	GGTGA	2 cut(s)	938, 1048
AsuII	TTCGAA	2 cut(s)	39, 1113
BaeGI	GKGCMC	2 cut(s)	511, 733
BamHI	GGATCC	1 cut(s)	737
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
BbrPI	CACGTG	1 cut(s)	506
Bbv12I	GWGCWC	4 cut(s)	511, 664, 733, 876
BbvI	GCAGC	5 cut(s)	42, 139, 397, 810, 1091
BccI	CCATC	2 cut(s)	64, 194
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BclI	TGATCA	1 cut(s)	946
BcoDI	GTCTC	2 cut(s)	440, 658
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	2 cut(s)	237, 824
BglI	GCCNNNNNGGC	1 cut(s)	1052
BisI	GCNGC	6 cut(s)	31, 128, 411, 519, 824, 1080
BlpI	GCTNAGC	2 cut(s)	244, 264
BlsI	GCNGC	6 cut(s)	32, 129, 412, 520, 825, 1081
BmiI	GGNNCC	1 cut(s)	739
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
BpmI	CTGGAG	1 cut(s)	963
Bpu1102I	GCTNAGC	2 cut(s)	244, 264
Bpu14I	TTCGAA	2 cut(s)	39, 1113
BpuEI	CTTGAG	3 cut(s)	8, 932, 1028
BsaAI	YACGTR	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	174, 1032
BsaWI	WCCGGW	2 cut(s)	656, 707
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 914
Bse3DI	GCAATG	1 cut(s)	1020
BseAI	TCCGGA	1 cut(s)	656
BseDI	CCNNGG	2 cut(s)	174, 1032
BseLI	CCNNNNNNNGG	2 cut(s)	656, 914
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	1 cut(s)	278
BseSI	GKGCMC	2 cut(s)	511, 733
BseXI	GCAGC	5 cut(s)	42, 139, 397, 810, 1091
BseYI	CCCAGC	1 cut(s)	849
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	179, 995, 1046
BsiHKAI	GWGCWC	4 cut(s)	511, 664, 733, 876
BsiSI	CCGG	2 cut(s)	657, 708
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	656, 914
BsmAI	GTCTC	2 cut(s)	440, 658
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	1105
BsnI	GGCC	3 cut(s)	179, 995, 1046
Bsp119I	TTCGAA	2 cut(s)	39, 1113
Bsp1286I	GDGCHC	4 cut(s)	511, 664, 733, 876
Bsp13I	TCCGGA	1 cut(s)	656
Bsp143I	GATC	2 cut(s)	737, 946
Bsp1720I	GCTNAGC	2 cut(s)	244, 264
BspACI	CCGC	5 cut(s)	344, 518, 578, 692, 983
BspANI	GGCC	3 cut(s)	179, 995, 1046
BspCNI	CTCAG	1 cut(s)	277
BspEI	TCCGGA	1 cut(s)	656
BspLI	GGNNCC	1 cut(s)	739
BspMAI	CTGCAG	1 cut(s)	828
BspPI	GGATC	2 cut(s)	732, 745
BspQI	GCTCTTC	1 cut(s)	1065
BspT104I	TTCGAA	2 cut(s)	39, 1113
BsrBI	CCGCTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	1020
BssECI	CCNNGG	2 cut(s)	174, 1032
BssMI	GATC	2 cut(s)	737, 946
BssT1I	CCWWGG	2 cut(s)	174, 1032
Bst4CI	ACNGT	5 cut(s)	13, 67, 499, 705, 1064
Bst6I	CTCTTC	1 cut(s)	1065
BstBAI	YACGTR	1 cut(s)	506
BstBI	TTCGAA	2 cut(s)	39, 1113
BstC8I	GCNNGC	3 cut(s)	270, 540, 1077
BstDEI	CTNAG	4 cut(s)	221, 244, 264, 752
BstHHI	GCGC	1 cut(s)	783
BstKTI	GATC	2 cut(s)	740, 949
BstMAI	GTCTC	2 cut(s)	440, 658
BstMBI	GATC	2 cut(s)	737, 946
BstMWI	GCNNNNNNNGC	7 cut(s)	260, 269, 515, 584, 617, 823, 1052
BstNSI	RCATGY	3 cut(s)	934, 965, 1059
BstSFI	CTRYAG	2 cut(s)	237, 824
BstSLI	GKGCMC	2 cut(s)	511, 733
BstV1I	GCAGC	5 cut(s)	42, 139, 397, 810, 1091
BstX2I	RGATCY	1 cut(s)	737
BstYI	RGATCY	1 cut(s)	737
BsuRI	GGCC	3 cut(s)	179, 995, 1046
BtsI	GCAGTG	3 cut(s)	375, 549, 594
BtsIMutI	CAGTG	7 cut(s)	9, 57, 192, 375, 549, 594, 701
Cac8I	GCNNGC	3 cut(s)	270, 540, 1077
CaiI	CAGNNNCTG	3 cut(s)	136, 377, 593
CfoI	GCGC	1 cut(s)	783
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	2 cut(s)	357, 791
CviAII	CATG	6 cut(s)	217, 820, 878, 931, 962, 1056
CviQI	GTAC	2 cut(s)	357, 791
DdeI	CTNAG	4 cut(s)	221, 244, 264, 752
DpnI	GATC	2 cut(s)	739, 948
DpnII	GATC	2 cut(s)	737, 946
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	1065
EarI	CTCTTC	1 cut(s)	1065
Eco130I	CCWWGG	2 cut(s)	174, 1032
Eco147I	AGGCCT	1 cut(s)	1046
Eco57I	CTGAAG	4 cut(s)	216, 333, 354, 942
Eco72I	CACGTG	1 cut(s)	506
EcoT14I	CCWWGG	2 cut(s)	174, 1032
ErhI	CCWWGG	2 cut(s)	174, 1032
FaeI	CATG	6 cut(s)	220, 823, 881, 934, 965, 1059
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	6 cut(s)	216, 819, 877, 930, 961, 1055
FbaI	TGATCA	1 cut(s)	946
Fnu4HI	GCNGC	6 cut(s)	31, 128, 411, 519, 824, 1080
Fsp4HI	GCNGC	6 cut(s)	31, 128, 411, 519, 824, 1080
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	1 cut(s)	782
GluI	GCNGC	6 cut(s)	31, 128, 411, 519, 824, 1080
GsaI	CCCAGC	1 cut(s)	853
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	3 cut(s)	179, 995, 1046
HapII	CCGG	2 cut(s)	657, 708
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	1 cut(s)	783
Hin1II	CATG	6 cut(s)	220, 823, 881, 934, 965, 1059
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HpaII	CCGG	2 cut(s)	657, 708
HphI	GGTGA	2 cut(s)	938, 1048
Hpy166II	GTNNAC	3 cut(s)	509, 547, 731
Hpy188I	TCNGA	3 cut(s)	352, 373, 922
Hpy188III	TCNNGA	7 cut(s)	157, 440, 569, 657, 869, 911, 950
Hpy8I	GTNNAC	3 cut(s)	509, 547, 731
HpyAV	CCTTC	3 cut(s)	357, 899, 917
HpyCH4III	ACNGT	5 cut(s)	13, 67, 499, 705, 1064
HpyCH4IV	ACGT	2 cut(s)	505, 776
HpyCH4V	TGCA	7 cut(s)	296, 388, 509, 587, 611, 731, 826
HpyF10VI	GCNNNNNNNGC	7 cut(s)	260, 269, 515, 584, 617, 823, 1052
HpyF3I	CTNAG	4 cut(s)	221, 244, 264, 752
HpySE526I	ACGT	2 cut(s)	505, 776
Hsp92II	CATG	6 cut(s)	220, 823, 881, 934, 965, 1059
HspAI	GCGC	1 cut(s)	781
Kpn2I	TCCGGA	1 cut(s)	656
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	2 cut(s)	737, 946
LguI	GCTCTTC	1 cut(s)	1065
LmnI	GCTCC	5 cut(s)	334, 649, 659, 679, 871
Lsp1109I	GCAGC	5 cut(s)	42, 139, 397, 810, 1091
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	2 cut(s)	505, 776
MaeIII	GTNAC	6 cut(s)	132, 190, 499, 926, 973, 1058
MalI	GATC	2 cut(s)	739, 948
MbiI	CCGCTC	1 cut(s)	518
MboI	GATC	2 cut(s)	737, 946
MboII	GAAGA	3 cut(s)	94, 209, 1082
MflI	RGATCY	1 cut(s)	737
MhlI	GDGCHC	4 cut(s)	511, 664, 733, 876
MnlI	CCTC	8 cut(s)	32, 85, 752, 907, 918, 985, 1003, 1036
MroI	TCCGGA	1 cut(s)	656
MseI	TTAA	4 cut(s)	78, 857, 863, 896
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	2 cut(s)	578, 983
MspI	CCGG	2 cut(s)	657, 708
Mva1269I	GAATGC	1 cut(s)	1105
MwoI	GCNNNNNNNGC	7 cut(s)	260, 269, 515, 584, 617, 823, 1052
NdeII	GATC	2 cut(s)	737, 946
NlaIII	CATG	6 cut(s)	220, 823, 881, 934, 965, 1059
NlaIV	GGNNCC	1 cut(s)	739
NmeAIII	GCCGAG	1 cut(s)	907
NmuCI	GTSAC	3 cut(s)	190, 926, 1058
NspI	RCATGY	3 cut(s)	934, 965, 1059
NspV	TTCGAA	2 cut(s)	39, 1113
PceI	AGGCCT	1 cut(s)	1046
PciI	ACATGT	1 cut(s)	930
PciSI	GCTCTTC	1 cut(s)	1065
PcsI	WCGNNNNNNNCGW	1 cut(s)	511
PctI	GAATGC	1 cut(s)	1105
PkrI	GCNGC	6 cut(s)	32, 129, 412, 520, 825, 1081
PmaCI	CACGTG	1 cut(s)	506
PmlI	CACGTG	1 cut(s)	506
Ppu21I	YACGTR	1 cut(s)	506
PscI	ACATGT	1 cut(s)	930
PshBI	ATTAAT	2 cut(s)	863, 896
PsiI	TTATAA	1 cut(s)	525
Psp1406I	AACGTT	1 cut(s)	776
PspCI	CACGTG	1 cut(s)	506
PspFI	CCCAGC	1 cut(s)	849
PspN4I	GGNNCC	1 cut(s)	739
PstI	CTGCAG	1 cut(s)	828
PstNI	CAGNNNCTG	3 cut(s)	136, 377, 593
PsuI	RGATCY	1 cut(s)	737
RsaI	GTAC	2 cut(s)	358, 792
RsaNI	GTAC	2 cut(s)	357, 791
RseI	CAYNNNNRTG	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	1065
SaqAI	TTAA	4 cut(s)	78, 857, 863, 896
SatI	GCNGC	6 cut(s)	31, 128, 411, 519, 824, 1080
Sau3AI	GATC	2 cut(s)	737, 946
SduI	GDGCHC	4 cut(s)	511, 664, 733, 876
SfcI	CTRYAG	2 cut(s)	237, 824
SfuI	TTCGAA	2 cut(s)	39, 1113
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	3 cut(s)	23, 911, 1007
SmoI	CTYRAG	3 cut(s)	23, 911, 1007
SseBI	AGGCCT	1 cut(s)	1046
SsiI	CCGC	5 cut(s)	344, 518, 578, 692, 983
SspMI	CTAG	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	1046
StyI	CCWWGG	2 cut(s)	174, 1032
TaaI	ACNGT	5 cut(s)	13, 67, 499, 705, 1064
TaiI	ACGT	2 cut(s)	508, 779
TaqI	TCGA	4 cut(s)	39, 514, 744, 1113
TauI	GCSGC	1 cut(s)	521
Tru1I	TTAA	4 cut(s)	78, 857, 863, 896
Tru9I	TTAA	4 cut(s)	78, 857, 863, 896
TscAI	CASTG	7 cut(s)	16, 64, 199, 382, 549, 594, 708
TseFI	GTSAC	3 cut(s)	190, 926, 1058
TseI	GCWGC	5 cut(s)	30, 127, 410, 823, 1079
Tsp45I	GTSAC	3 cut(s)	190, 926, 1058
TspDTI	ATGAA	4 cut(s)	17, 246, 918, 1083
TspRI	CASTG	7 cut(s)	16, 64, 199, 382, 549, 594, 708
VneI	GTGCAC	2 cut(s)	507, 729
VspI	ATTAAT	2 cut(s)	863, 896
XapI	RAATTY	3 cut(s)	307, 418, 807
XceI	RCATGY	3 cut(s)	934, 965, 1059
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1090
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.