Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

59993924 .. 59997814

Gene Structure 3891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTTCATACTCGCTCCTTTGAGCGATGACGATAACGATGACTTAATTCAACTTGCTGCTATGGTGGTGGTTCCTGCTGCCACCCAGCCCAAGCCATTTTCAACATGGGAGACTCAGTGCAAGAGTGAAGTGAGAAAAAGTTTTGGCCAAGGAAAGGGATTTGAGCCATTTTCAGATTTTCTGGAATTTGACCCAGTCACTTACTTTTGCCCTCAAAGAGTACCACTCCCGCTTCGTACGCCGCCGAGTATGCTTCTTTCTGCAGTTCCTATAATGATATTTGATGCATGTGATTTGAGCCCAGAAGAAAAGTTCCTGAGTTTGATTTGTGTGCATACTGATACCTATGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAATCTTGAGCAGACTATTCAACAGATAATGGATATGGGTGGTGGAAATTGGGACGAGAGAAACAGTTACACCGAAAGTTGCGGTGTTCGTGACTCATTTCCCGTAAGTCGTGCAACCGAAACAGGCATAACCAATGCTCCACCTATCTCCAGAGCAGCTAATTCAGTTGGAATTCTCCAAGAAGCATTGTCCGATGTCGGTGCCGGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCAATTCCAAACATTGCGCTCAATGTTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAGCAAAACCCACAGCTTTTAAGTTTAATTCAGGAGCACCATGCCGAGTTCCTTCAGTTAATAAATGAACCTCTTGAGGGTTCGAAGGGACCAAAAGGGAGAAAGGGAGCAGGGGTAGAAGCTTGGTATTTTCATATGTGGAATGAGGGGGCTAAGTTTGTCGTCAATATATATATATCTAGGAGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

295

Amino Acids

32.59

Weight (kDa)

4.84

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XPC-binding	PF09280	201 - 256	1.5e-21	XPC-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	581
AciI	CCGC	3 cut(s)	230, 242, 462
AclWI	GGATC	2 cut(s)	591, 604
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	4 cut(s)	185, 364, 552, 666
AcuI	CTGAAG	1 cut(s)	734
AfaI	GTAC	2 cut(s)	222, 238
AfiI	CCNNNNNNNGG	2 cut(s)	154, 773
AgsI	TTSAA	3 cut(s)	50, 102, 401
AluBI	AGCT	5 cut(s)	356, 539, 712, 818, 882
AluI	AGCT	5 cut(s)	356, 539, 712, 818, 882
Alw21I	GWGCWC	2 cut(s)	592, 735
Alw26I	GTCTC	1 cut(s)	104
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	2 cut(s)	591, 604
AoxI	GGCC	1 cut(s)	145
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	5 cut(s)	56, 77, 356, 536, 682
ApoI	RAATTY	4 cut(s)	185, 364, 552, 666
AspLEI	GCGC	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	785
AsuII	TTCGAA	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	785
BaeGI	GKGCMC	1 cut(s)	592
BalI	TGGCCA	1 cut(s)	147
BamHI	GGATCC	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	581
BanII	GRGCYC	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	592, 735
BbvI	GCAGC	5 cut(s)	43, 64, 343, 548, 669
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	876
BfmI	CTRYAG	2 cut(s)	261, 683
BisI	GCNGC	6 cut(s)	57, 78, 242, 357, 537, 683
BlsI	GCNGC	6 cut(s)	58, 79, 243, 358, 538, 684
Bme18I	GGWCC	1 cut(s)	785
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	4 cut(s)	72, 583, 598, 786
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	188
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BpmI	CTGGAG	1 cut(s)	514
Bpu14I	TTCGAA	1 cut(s)	779
BpuEI	CTTGAG	2 cut(s)	407, 791
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 131, 502, 532, 795, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 773
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	635
BseDI	CCNNGG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	154, 773
BseMI	GCAATG	1 cut(s)	635
BseMII	CTCAG	2 cut(s)	128, 308
BseNI	ACTGG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	5 cut(s)	43, 64, 343, 548, 669
BseYI	CCCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	581
BsiHKAI	GWGCWC	2 cut(s)	592, 735
BsiSI	CCGG	1 cut(s)	585
BsiWI	CGTACG	1 cut(s)	236
BslFI	GGGAC	2 cut(s)	446, 798
BslI	CCNNNNNNNGG	2 cut(s)	154, 773
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	446, 798
BsnI	GGCC	1 cut(s)	147
Bsp119I	TTCGAA	1 cut(s)	779
Bsp1286I	GDGCHC	3 cut(s)	302, 592, 735
Bsp143I	GATC	1 cut(s)	596
BspACI	CCGC	3 cut(s)	230, 242, 462
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	127, 309
BspLI	GGNNCC	4 cut(s)	72, 583, 598, 786
BspMAI	CTGCAG	2 cut(s)	265, 687
BspPI	GGATC	2 cut(s)	591, 604
BspT104I	TTCGAA	1 cut(s)	779
BspT107I	GGYRCC	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	635
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	596
BssT1I	CCWWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	779
BstDEI	CTNAG	4 cut(s)	114, 317, 611, 849
BstHHI	GCGC	1 cut(s)	642
BstKTI	GATC	1 cut(s)	599
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	596
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 250, 682
BstNSI	RCATGY	1 cut(s)	291
BstSFI	CTRYAG	2 cut(s)	261, 683
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	5 cut(s)	43, 64, 343, 548, 669
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	122
CfoI	GCGC	1 cut(s)	642
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	785
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	221, 237
CviAII	CATG	4 cut(s)	105, 288, 679, 737
CviQI	GTAC	2 cut(s)	221, 237
DdeI	CTNAG	4 cut(s)	114, 317, 611, 849
DpnI	GATC	1 cut(s)	598
DpnII	GATC	1 cut(s)	596
EaeI	YGGCCR	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	785
Eco57I	CTGAAG	1 cut(s)	734
EcoRI	GAATTC	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	4 cut(s)	108, 291, 682, 740
FaqI	GGGAC	2 cut(s)	446, 798
FatI	CATG	4 cut(s)	104, 287, 678, 736
FauI	CCCGC	1 cut(s)	237
FauNDI	CATATG	1 cut(s)	831
Fnu4HI	GCNGC	6 cut(s)	57, 78, 242, 357, 537, 683
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	6 cut(s)	57, 78, 242, 357, 537, 683
FspBI	CTAG	1 cut(s)	876
GlaI	GCGC	1 cut(s)	641
GluI	GCNGC	6 cut(s)	57, 78, 242, 357, 537, 683
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	514
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	1 cut(s)	585
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	1 cut(s)	642
Hin1II	CATG	4 cut(s)	108, 291, 682, 740
Hin6I	GCGC	1 cut(s)	640
HinP1I	GCGC	1 cut(s)	640
HindIII	AAGCTT	1 cut(s)	816
HinfI	GANTC	2 cut(s)	112, 473
HpaII	CCGG	1 cut(s)	585
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	2 cut(s)	175, 574
Hpy188III	TCNNGA	7 cut(s)	182, 316, 386, 470, 531, 728, 770
Hpy8I	GTNNAC	1 cut(s)	590
HpyAV	CCTTC	2 cut(s)	758, 775
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4V	TGCA	7 cut(s)	120, 263, 287, 334, 494, 590, 685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 250, 682
HpyF3I	CTNAG	4 cut(s)	114, 317, 611, 849
Hsp92II	CATG	4 cut(s)	108, 291, 682, 740
HspAI	GCGC	1 cut(s)	640
Kzo9I	GATC	1 cut(s)	596
LmnI	GCTCC	5 cut(s)	19, 523, 730, 803, 879
Lsp1109I	GCAGC	5 cut(s)	43, 64, 343, 548, 669
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	876
MaeIII	GTNAC	4 cut(s)	196, 446, 470, 648
MalI	GATC	1 cut(s)	598
MboI	GATC	1 cut(s)	596
MboII	GAAGA	1 cut(s)	317
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	3 cut(s)	302, 592, 735
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	9 cut(s)	45, 185, 364, 427, 541, 552, 626, 666, 723
MluNI	TGGCCA	1 cut(s)	147
MlyI	GAGTC	2 cut(s)	106, 467
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	5 cut(s)	222, 611, 766, 777, 835
Mox20I	TGGCCA	1 cut(s)	147
Mph1103I	ATGCAT	1 cut(s)	289
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	4 cut(s)	44, 716, 722, 755
Msp20I	TGGCCA	1 cut(s)	147
MspI	CCGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	3 cut(s)	238, 250, 682
NdeI	CATATG	1 cut(s)	831
NdeII	GATC	1 cut(s)	596
NlaIII	CATG	4 cut(s)	108, 291, 682, 740
NlaIV	GGNNCC	4 cut(s)	72, 583, 598, 786
NmeAIII	GCCGAG	2 cut(s)	270, 766
NmuCI	GTSAC	2 cut(s)	196, 470
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	291
NspV	TTCGAA	1 cut(s)	779
Pfl23II	CGTACG	1 cut(s)	236
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	6 cut(s)	58, 79, 243, 358, 538, 684
PleI	GAGTC	2 cut(s)	106, 467
PpsI	GAGTC	2 cut(s)	106, 467
PspFI	CCCAGC	1 cut(s)	84
PspLI	CGTACG	1 cut(s)	236
PspN4I	GGNNCC	4 cut(s)	72, 583, 598, 786
PspPI	GGNCC	1 cut(s)	785
PstI	CTGCAG	2 cut(s)	265, 687
PsuI	RGATCY	1 cut(s)	596
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	2 cut(s)	222, 238
RsaNI	GTAC	2 cut(s)	221, 237
SaqAI	TTAA	4 cut(s)	44, 716, 722, 755
SatI	GCNGC	6 cut(s)	57, 78, 242, 357, 537, 683
Sau3AI	GATC	1 cut(s)	596
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	2 cut(s)	106, 467
SduI	GDGCHC	3 cut(s)	302, 592, 735
SetI	ASST	8 cut(s)	347, 358, 526, 541, 714, 769, 820, 884
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	2 cut(s)	261, 683
SfuI	TTCGAA	1 cut(s)	779
SinI	GGWCC	1 cut(s)	785
SmlI	CTYRAG	2 cut(s)	386, 770
SmoI	CTYRAG	2 cut(s)	386, 770
Sse9I	AATT	9 cut(s)	45, 185, 364, 427, 541, 552, 626, 666, 723
SsiI	CCGC	3 cut(s)	230, 242, 462
SspMI	CTAG	1 cut(s)	876
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	446
TaqI	TCGA	2 cut(s)	603, 779
TasI	AATT	9 cut(s)	45, 185, 364, 427, 541, 552, 626, 666, 723
TauI	GCSGC	1 cut(s)	244
Tru1I	TTAA	4 cut(s)	44, 716, 722, 755
Tru9I	TTAA	4 cut(s)	44, 716, 722, 755
TscAI	CASTG	1 cut(s)	122
TseFI	GTSAC	2 cut(s)	196, 470
TseI	GCWGC	5 cut(s)	56, 77, 356, 536, 682
Tsp45I	GTSAC	2 cut(s)	196, 470
TspDTI	ATGAA	2 cut(s)	777, 818
TspRI	CASTG	1 cut(s)	122
Tth111I	GACNNNGTC	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	785
XapI	RAATTY	4 cut(s)	185, 364, 552, 666
XceI	RCATGY	1 cut(s)	291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	102
XspI	CTAG	1 cut(s)	876
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.