Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

77002266 .. 77004382

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021652

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCTCATGGCATTGTCAATGTTGATTACAAGACTATTCAACAGATAATGGATATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCACTTCGAGCGGCTTTTAAAAACCCAGAGCGAGCAGTGGACTACATTGTTGTTCAGAGTATTCCAGAAACAGCGAAAGTTGCAGTGCCTGTGGCTCATTTCCCTGCAAGTCAGGCAACCGAAACAGGCATAGCCAATGCTCTACCTATCTCCGGAGCACCTAATTCAGGTCCCCTGAATATGTTTCCGCAGGAAGCACTGTCCGGTGCTGGTGCTGGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCAGCTGATTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

121

Amino Acids

12.67

Weight (kDa)

5.82

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA	PF00627	11 - 47	9.4e-11	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	104
AccIII	TCCGGA	1 cut(s)	245
AciI	CCGC	2 cut(s)	104, 281
AclWI	GGATC	2 cut(s)	315, 328
AcvI	CACGTG	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	245, 260
AflIII	ACRYGT	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	41
AluBI	AGCT	2 cut(s)	352, 360
AluI	AGCT	2 cut(s)	352, 360
Alw21I	GWGCWC	3 cut(s)	97, 253, 316
Alw26I	GTCTC	1 cut(s)	9
Alw44I	GTGCAC	2 cut(s)	93, 312
AlwI	GGATC	2 cut(s)	315, 328
AlwNI	CAGNNNCTG	1 cut(s)	182
Aor13HI	TCCGGA	1 cut(s)	245
ApaLI	GTGCAC	2 cut(s)	93, 312
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	2 cut(s)	97, 316
BamHI	GGATCC	1 cut(s)	320
BbrPI	CACGTG	1 cut(s)	92
Bbv12I	GWGCWC	3 cut(s)	97, 253, 316
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	361
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	265, 322
BsaAI	YACGTR	1 cut(s)	92
BsaWI	WCCGGW	2 cut(s)	245, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 260
BseAI	TCCGGA	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	245, 260
BseSI	GKGCMC	2 cut(s)	97, 316
BsiHKAI	GWGCWC	3 cut(s)	97, 253, 316
BsiSI	CCGG	2 cut(s)	246, 297
BslFI	GGGAC	2 cut(s)	86, 249
BslI	CCNNNNNNNGG	2 cut(s)	245, 260
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	86, 249
Bsp1286I	GDGCHC	3 cut(s)	97, 253, 316
Bsp13I	TCCGGA	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	320
BspACI	CCGC	2 cut(s)	104, 281
BspEI	TCCGGA	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	265, 322
BspPI	GGATC	2 cut(s)	315, 328
BsrBI	CCGCTC	1 cut(s)	104
BssMI	GATC	1 cut(s)	320
Bst4CI	ACNGT	2 cut(s)	85, 294
BstBAI	YACGTR	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	335
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	323
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	320
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 173, 206
BstSLI	GKGCMC	2 cut(s)	97, 316
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BtsI	GCAGTG	2 cut(s)	135, 183
BtsIMutI	CAGTG	3 cut(s)	135, 183, 290
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	263
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	5 cut(s)	107, 188, 227, 352, 360
CviKI_1	RGCY	5 cut(s)	107, 188, 227, 352, 360
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	1 cut(s)	322
DpnII	GATC	1 cut(s)	320
DraI	TTTAAA	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	263
Eco72I	CACGTG	1 cut(s)	92
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	263
FaeI	CATG	1 cut(s)	11
FaiI	YATR	4 cut(s)	9, 56, 224, 275
FaqI	GGGAC	2 cut(s)	86, 249
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	361
GluI	GCNGC	1 cut(s)	105
HapII	CCGG	2 cut(s)	246, 297
Hin1II	CATG	1 cut(s)	11
HpaII	CCGG	2 cut(s)	246, 297
Hpy166II	GTNNAC	3 cut(s)	95, 133, 314
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	2 cut(s)	158, 246
Hpy8I	GTNNAC	3 cut(s)	95, 133, 314
HpyCH4III	ACNGT	2 cut(s)	85, 294
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	4 cut(s)	95, 176, 200, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 173, 206
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	11
Kpn2I	TCCGGA	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	320
LmnI	GCTCC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	361
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	322
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	1 cut(s)	320
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	3 cut(s)	97, 253, 316
MluCI	AATT	2 cut(s)	67, 256
MnlI	CCTC	1 cut(s)	335
MroI	TCCGGA	1 cut(s)	245
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	2 cut(s)	246, 297
MwoI	GCNNNNNNNGC	3 cut(s)	101, 173, 206
NdeII	GATC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	2 cut(s)	265, 322
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	106
PmaCI	CACGTG	1 cut(s)	92
PmlI	CACGTG	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
PspCI	CACGTG	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	265, 322
PspPI	GGNCC	1 cut(s)	263
PspPPI	RGGWCCY	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	320
Sau96I	GGNCC	1 cut(s)	263
SduI	GDGCHC	3 cut(s)	97, 253, 316
SetI	ASST	6 cut(s)	94, 241, 256, 265, 354, 362
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	2 cut(s)	67, 256
SsiI	CCGC	2 cut(s)	104, 281
SspMI	CTAG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	85, 294
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	100, 327
TasI	AATT	2 cut(s)	67, 256
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	3 cut(s)	135, 183, 297
TspRI	CASTG	3 cut(s)	135, 183, 297
VneI	GTGCAC	2 cut(s)	93, 312
VpaK11BI	GGWCC	1 cut(s)	263
XagI	CCTNNNNNAGG	1 cut(s)	258
XspI	CTAG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.