Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

75294436 .. 75302639

Gene Structure 8204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00054010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGATCTTTTTGTGATGGGAGACTCAGTGCAAGAGTGAAGTATGACTTGAGTGACGATTTCAATTTGCTCGGTGTGCATACTGATACCTATGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAATCTTGAGCAGACTATTCAACAGATAATGGATATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCGCTTCGAGCGGCTTTTAACAACCCGATTGGAATTCTCCAAGAAGCACCGTCCGATGCTTTGGTTGGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCAACCCATGCTGCAGGAACTTGGAAAGCAAAACCCACAGCTTTTAAGTTTAATTCAGGAGCACCATGCCGAGTTCCTTCAGTTAATAAATGAACCTCTTGAGGGTTCGAAGGGTGAGCATTTATACATGTTAATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

147

Amino Acids

16.18

Weight (kDa)

4.78

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA	PF00627	45 - 75	2.9e-07	UBA/TS-N domain
XPC-binding	PF09280	102 - 133	1.1e-09	XPC-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	209
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	3 cut(s)	13, 270, 283
AcsI	RAATTY	2 cut(s)	109, 231
AcuI	CTGAAG	1 cut(s)	365
AcvI	CACGTG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	404
AflIII	ACRYGT	2 cut(s)	194, 429
AgsI	TTSAA	2 cut(s)	64, 146
AluBI	AGCT	2 cut(s)	101, 343
AluI	AGCT	2 cut(s)	101, 343
Alw21I	GWGCWC	2 cut(s)	271, 366
Alw26I	GTCTC	1 cut(s)	16
Alw44I	GTGCAC	1 cut(s)	267
AlwI	GGATC	3 cut(s)	13, 270, 283
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	101, 313
ApoI	RAATTY	2 cut(s)	109, 231
AspLEI	GCGC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	428
AsuII	TTCGAA	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	275
BbrPI	CACGTG	1 cut(s)	197
Bbv12I	GWGCWC	2 cut(s)	271, 366
BbvI	GCAGC	2 cut(s)	88, 300
BccI	CCATC	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	16
BfmI	CTRYAG	1 cut(s)	314
BisI	GCNGC	3 cut(s)	102, 210, 314
BlsI	GCNGC	3 cut(s)	103, 211, 315
BmiI	GGNNCC	1 cut(s)	277
BmsI	GCATC	1 cut(s)	244
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	3 cut(s)	70, 152, 422
BsaAI	YACGTR	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	40
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	88, 300
BsiHKAI	GWGCWC	2 cut(s)	271, 366
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	410
Bsp1286I	GDGCHC	2 cut(s)	271, 366
Bsp143I	GATC	2 cut(s)	5, 275
BspACI	CCGC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	318
BspPI	GGATC	3 cut(s)	13, 270, 283
BspT104I	TTCGAA	1 cut(s)	410
BsrBI	CCGCTC	1 cut(s)	209
BssMI	GATC	2 cut(s)	5, 275
Bst4CI	ACNGT	2 cut(s)	190, 249
BstBAI	YACGTR	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	410
BstDEI	CTNAG	2 cut(s)	26, 290
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	2 cut(s)	8, 278
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	2 cut(s)	5, 275
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 206
BstNSI	RCATGY	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	88, 300
BstX2I	RGATCY	2 cut(s)	5, 275
BstYI	RGATCY	2 cut(s)	5, 275
BtsIMutI	CAGTG	1 cut(s)	34
CfoI	GCGC	1 cut(s)	202
CseI	GACGC	1 cut(s)	93
CviAII	CATG	3 cut(s)	310, 368, 430
CviJI	RGCY	3 cut(s)	101, 212, 343
CviKI_1	RGCY	3 cut(s)	101, 212, 343
DdeI	CTNAG	2 cut(s)	26, 290
DpnI	GATC	2 cut(s)	7, 277
DpnII	GATC	2 cut(s)	5, 275
Eco57I	CTGAAG	1 cut(s)	365
Eco72I	CACGTG	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	231
FaeI	CATG	3 cut(s)	313, 371, 433
FaiI	YATR	8 cut(s)	45, 81, 93, 161, 311, 369, 427, 431
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	3 cut(s)	309, 367, 429
Fnu4HI	GCNGC	3 cut(s)	102, 210, 314
Fsp4HI	GCNGC	3 cut(s)	102, 210, 314
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	3 cut(s)	102, 210, 314
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	3 cut(s)	313, 371, 433
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	1 cut(s)	24
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	3 cut(s)	131, 359, 401
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	2 cut(s)	389, 406
HpyCH4III	ACNGT	2 cut(s)	190, 249
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	32, 79, 269, 316
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 206
HpyF3I	CTNAG	2 cut(s)	26, 290
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	3 cut(s)	313, 371, 433
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	5, 275
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	3 cut(s)	105, 302, 344
Lsp1109I	GCAGC	2 cut(s)	88, 300
LweI	GCATC	1 cut(s)	244
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	53, 190
MalI	GATC	2 cut(s)	7, 277
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	2 cut(s)	5, 275
MflI	RGATCY	2 cut(s)	5, 275
MhlI	GDGCHC	2 cut(s)	271, 366
MluCI	AATT	6 cut(s)	64, 109, 172, 231, 354, 435
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	3 cut(s)	290, 397, 408
MseI	TTAA	6 cut(s)	216, 347, 353, 386, 434, 442
MwoI	GCNNNNNNNGC	2 cut(s)	76, 206
NdeII	GATC	2 cut(s)	5, 275
NlaIII	CATG	3 cut(s)	313, 371, 433
NlaIV	GGNNCC	1 cut(s)	277
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	433
NspV	TTCGAA	1 cut(s)	410
PciI	ACATGT	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	103, 211, 315
PleI	GAGTC	1 cut(s)	18
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	197
PscI	ACATGT	1 cut(s)	429
PspCI	CACGTG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	2 cut(s)	5, 275
SaqAI	TTAA	6 cut(s)	216, 347, 353, 386, 434, 442
SatI	GCNGC	3 cut(s)	102, 210, 314
Sau3AI	GATC	2 cut(s)	5, 275
SchI	GAGTC	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	271, 366
SetI	ASST	5 cut(s)	92, 103, 199, 345, 400
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	410
SmlI	CTYRAG	3 cut(s)	49, 131, 401
SmoI	CTYRAG	3 cut(s)	49, 131, 401
Sse9I	AATT	6 cut(s)	64, 109, 172, 231, 354, 435
SsiI	CCGC	1 cut(s)	209
TaaI	ACNGT	2 cut(s)	190, 249
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	3 cut(s)	205, 282, 410
TasI	AATT	6 cut(s)	64, 109, 172, 231, 354, 435
TauI	GCSGC	1 cut(s)	212
Tru1I	TTAA	6 cut(s)	216, 347, 353, 386, 434, 442
Tru9I	TTAA	6 cut(s)	216, 347, 353, 386, 434, 442
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	2 cut(s)	101, 313
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	408
TspRI	CASTG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	267
XapI	RAATTY	2 cut(s)	109, 231
XceI	RCATGY	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.