Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

66285930 .. 66287619

Gene Structure 1690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030713

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGATGTTAACTCTCTTGTGTTTCAATTGCAATGTGCATACTGATACCTATGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAGTCTTGAGCAGACTATTCAACAGATAATGGATCTGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCACTTCGAGCGGCTTTTAATAACCCAGAGCGAGCAGTGGACTACTTGTACTCTAGTATTCCAGAAACAACGAAAGTTGCAGTGCTTGTGGCTCATTTCCCTGCAAGTCAGGCAACTGACACAGGCATAGCCAATGCTCCACCTATCTCCGGAGCACCTAATTCAGGTCCCCTGCATATGTTTCCGCAGGAAGCACTGTCCGGTGCTGGTGCTGGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCCGTTCCAAACGTTGCGCTCAATGTTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAGCAAAACCCACAGCTTTTAAGATTAATTCAGGAGCACCATGCCGAGTTCCTTCAGTTAATAAGTGACCCTCTTGAGGGTTTTGAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

191

Amino Acids

20.56

Weight (kDa)

5.06

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA	PF00627	30 - 68	3.2e-11	UBA/TS-N domain
XPC-binding	PF09280	129 - 184	3.1e-20	XPC-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	167
AccIII	TCCGGA	1 cut(s)	305
AciI	CCGC	2 cut(s)	167, 341
AclI	AACGTT	1 cut(s)	419
AclWI	GGATC	3 cut(s)	123, 375, 388
AcsI	RAATTY	2 cut(s)	67, 450
AcuI	CTGAAG	1 cut(s)	518
AcvI	CACGTG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	4 cut(s)	305, 320, 556, 557
AflIII	ACRYGT	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	25, 104, 566
AhlI	ACTAGT	1 cut(s)	83
AluBI	AGCT	2 cut(s)	59, 496
AluI	AGCT	2 cut(s)	59, 496
Alw21I	GWGCWC	4 cut(s)	160, 313, 376, 519
Alw44I	GTGCAC	2 cut(s)	156, 372
AlwI	GGATC	3 cut(s)	123, 375, 388
Aor13HI	TCCGGA	1 cut(s)	305
ApaLI	GTGCAC	2 cut(s)	156, 372
ApeKI	GCWGC	2 cut(s)	59, 466
ApoI	RAATTY	2 cut(s)	67, 450
AseI	ATTAAT	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	323
BaeGI	GKGCMC	2 cut(s)	160, 376
BamHI	GGATCC	1 cut(s)	380
BbrPI	CACGTG	1 cut(s)	155
Bbv12I	GWGCWC	4 cut(s)	160, 313, 376, 519
BbvI	GCAGC	2 cut(s)	46, 453
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	2 cut(s)	84, 210
BfmI	CTRYAG	1 cut(s)	467
BisI	GCNGC	3 cut(s)	60, 168, 467
BlsI	GCNGC	3 cut(s)	61, 169, 468
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	325, 382
BpuEI	CTTGAG	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	155
BsaWI	WCCGGW	2 cut(s)	305, 356
Bsc4I	CCNNNNNNNGG	4 cut(s)	305, 320, 556, 557
Bse3DI	GCAATG	1 cut(s)	37
BseAI	TCCGGA	1 cut(s)	305
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	4 cut(s)	305, 320, 556, 557
BseMI	GCAATG	1 cut(s)	37
BseSI	GKGCMC	2 cut(s)	160, 376
BseXI	GCAGC	2 cut(s)	46, 453
BsiHKAI	GWGCWC	4 cut(s)	160, 313, 376, 519
BsiSI	CCGG	2 cut(s)	306, 357
BslFI	GGGAC	2 cut(s)	149, 309
BslI	CCNNNNNNNGG	4 cut(s)	305, 320, 556, 557
BsmFI	GGGAC	2 cut(s)	149, 309
Bsp1286I	GDGCHC	4 cut(s)	160, 313, 376, 519
Bsp13I	TCCGGA	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	115, 380
BspACI	CCGC	2 cut(s)	167, 341
BspEI	TCCGGA	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	325, 382
BspMAI	CTGCAG	1 cut(s)	471
BspPI	GGATC	3 cut(s)	123, 375, 388
BsrBI	CCGCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	37
BssMI	GATC	2 cut(s)	115, 380
Bst4CI	ACNGT	2 cut(s)	148, 354
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	395
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	2 cut(s)	118, 383
BstMBI	GATC	2 cut(s)	115, 380
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 266, 466
BstSFI	CTRYAG	1 cut(s)	467
BstSLI	GKGCMC	2 cut(s)	160, 376
BstV1I	GCAGC	2 cut(s)	46, 453
BstX2I	RGATCY	2 cut(s)	115, 380
BstYI	RGATCY	2 cut(s)	115, 380
BtsCI	GGATG	1 cut(s)	406
BtsI	GCAGTG	2 cut(s)	198, 243
BtsIMutI	CAGTG	3 cut(s)	198, 243, 350
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	323
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	2 cut(s)	463, 521
CviJI	RGCY	7 cut(s)	59, 170, 248, 287, 440, 460, 496
CviKI_1	RGCY	7 cut(s)	59, 170, 248, 287, 440, 460, 496
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	2 cut(s)	117, 382
DpnII	GATC	2 cut(s)	115, 380
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	518
Eco72I	CACGTG	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	323
FaeI	CATG	2 cut(s)	466, 524
FaiI	YATR	7 cut(s)	39, 51, 284, 333, 335, 464, 522
FaqI	GGGAC	2 cut(s)	149, 309
FatI	CATG	2 cut(s)	462, 520
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	60, 168, 467
FokI	GGATG	1 cut(s)	393
Fsp4HI	GCNGC	3 cut(s)	60, 168, 467
FspBI	CTAG	2 cut(s)	84, 210
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	3 cut(s)	60, 168, 467
HapII	CCGG	2 cut(s)	306, 357
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	2 cut(s)	466, 524
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	2 cut(s)	306, 357
Hpy166II	GTNNAC	4 cut(s)	9, 158, 196, 374
Hpy188III	TCNNGA	5 cut(s)	89, 218, 306, 512, 554
Hpy8I	GTNNAC	4 cut(s)	9, 158, 196, 374
HpyAV	CCTTC	2 cut(s)	542, 560
HpyCH4III	ACNGT	2 cut(s)	148, 354
HpyCH4IV	ACGT	2 cut(s)	154, 419
HpyCH4V	TGCA	8 cut(s)	30, 37, 158, 236, 260, 331, 374, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 266, 466
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	2 cut(s)	154, 419
Hsp92II	CATG	2 cut(s)	466, 524
HspAI	GCGC	1 cut(s)	424
Kpn2I	TCCGGA	1 cut(s)	305
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	115, 380
LmnI	GCTCC	3 cut(s)	298, 308, 514
Lsp1109I	GCAGC	2 cut(s)	46, 453
MaeI	CTAG	2 cut(s)	84, 210
MaeII	ACGT	2 cut(s)	154, 419
MaeIII	GTNAC	3 cut(s)	148, 432, 545
MalI	GATC	2 cut(s)	117, 382
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	2 cut(s)	115, 380
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	2 cut(s)	115, 380
MhlI	GDGCHC	4 cut(s)	160, 313, 376, 519
MluCI	AATT	6 cut(s)	25, 67, 130, 316, 450, 507
MnlI	CCTC	3 cut(s)	395, 550, 561
MroI	TCCGGA	1 cut(s)	305
MseI	TTAA	5 cut(s)	8, 174, 500, 506, 539
MspI	CCGG	2 cut(s)	306, 357
MunI	CAATTG	1 cut(s)	25
MwoI	GCNNNNNNNGC	3 cut(s)	164, 266, 466
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	2 cut(s)	115, 380
NlaIII	CATG	2 cut(s)	466, 524
NlaIV	GGNNCC	2 cut(s)	325, 382
NmeAIII	GCCGAG	1 cut(s)	550
NmuCI	GTSAC	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PkrI	GCNGC	3 cut(s)	61, 169, 468
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	506
Psp1406I	AACGTT	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	323
PspCI	CACGTG	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	325, 382
PspPI	GGNCC	1 cut(s)	323
PspPPI	RGGWCCY	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	471
PsuI	RGATCY	2 cut(s)	115, 380
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	5 cut(s)	8, 174, 500, 506, 539
SatI	GCNGC	3 cut(s)	60, 168, 467
Sau3AI	GATC	2 cut(s)	115, 380
Sau96I	GGNCC	1 cut(s)	323
SduI	GDGCHC	4 cut(s)	160, 313, 376, 519
SetI	ASST	8 cut(s)	50, 61, 157, 301, 316, 325, 422, 498
SfcI	CTRYAG	1 cut(s)	467
SinI	GGWCC	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	89, 554
SmoI	CTYRAG	2 cut(s)	89, 554
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	6 cut(s)	25, 67, 130, 316, 450, 507
SsiI	CCGC	2 cut(s)	167, 341
SspMI	CTAG	2 cut(s)	84, 210
TaaI	ACNGT	2 cut(s)	148, 354
TaiI	ACGT	2 cut(s)	157, 422
TaqI	TCGA	2 cut(s)	163, 387
TasI	AATT	6 cut(s)	25, 67, 130, 316, 450, 507
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	1 cut(s)	170
Tru1I	TTAA	5 cut(s)	8, 174, 500, 506, 539
Tru9I	TTAA	5 cut(s)	8, 174, 500, 506, 539
TscAI	CASTG	3 cut(s)	198, 243, 357
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	59, 466
Tsp45I	GTSAC	1 cut(s)	545
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	3 cut(s)	198, 243, 357
VneI	GTGCAC	2 cut(s)	156, 372
VpaK11BI	GGWCC	1 cut(s)	323
VspI	ATTAAT	1 cut(s)	506
XagI	CCTNNNNNAGG	1 cut(s)	318
XapI	RAATTY	2 cut(s)	67, 450
XspI	CTAG	2 cut(s)	84, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.