Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

16308929 .. 16310180

Gene Structure 1252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55697

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCACTTCGAGCGGCTTTTAACAACCCAGAGTGAGCAGTGGACTACTTGTACTCTGTATAGTATTCCAGAAACAGCGGAAGTTGTAGTGCTTGTGGCTCATTTCCCTGCAAGTCAGGCAACCGAAACAGGCATAGCCAATGCTCCACCAATCTCCGAAGCACCTAATTCAGGTCCCTTGAATATGTTTCCCCAGGAAGCACTGTCCGGTGCTGGTGCATTTGGATCCCTCGACTTCCTTAGAAACAATCATTTCCAAATGTTGCGCTCAATGTTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAGCAAAACCCACAGCTTTTAAGATTAATTCAGGAGCACCATGCCGAGTTCCTTCAATTAATAAATGAACCTCTTGAGGGTTCTGAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

137

Amino Acids

15.16

Weight (kDa)

4.79

Isoelectric Point (pI)

60.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XPC-binding	PF09280	77 - 131	1.1e-19	XPC-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	13
AciI	CCGC	2 cut(s)	13, 77
AclWI	GGATC	2 cut(s)	219, 232
AcsI	RAATTY	1 cut(s)	291
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	2 cut(s)	170, 398
AgsI	TTSAA	2 cut(s)	181, 377
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw21I	GWGCWC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	219, 232
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	291
AseI	ATTAAT	2 cut(s)	347, 380
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	308
BisI	GCNGC	2 cut(s)	14, 308
BlsI	GCNGC	2 cut(s)	15, 309
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	175, 226
BmrFI	CCNGG	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 398
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	170, 398
BseXI	GCAGC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	170, 398
BsmFI	GGGAC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	224
BspACI	CCGC	2 cut(s)	13, 77
BspLI	GGNNCC	2 cut(s)	175, 226
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	2 cut(s)	219, 232
BsrBI	CCGCTC	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	239
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 116, 307
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	44, 200
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	2 cut(s)	304, 362
CviJI	RGCY	6 cut(s)	16, 98, 137, 281, 301, 337
CviKI_1	RGCY	6 cut(s)	16, 98, 137, 281, 301, 337
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	307, 365
FaiI	YATR	5 cut(s)	60, 134, 185, 305, 363
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	2 cut(s)	303, 361
Fnu4HI	GCNGC	2 cut(s)	14, 308
Fsp4HI	GCNGC	2 cut(s)	14, 308
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	2 cut(s)	14, 308
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	307, 365
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	207
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	2 cut(s)	157, 406
Hpy188III	TCNNGA	3 cut(s)	68, 353, 395
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	383, 401
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	4 cut(s)	4, 110, 218, 310
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 116, 307
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	307, 365
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	2 cut(s)	148, 355
Lsp1109I	GCAGC	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	273
MalI	GATC	1 cut(s)	226
MbiI	CCGCTC	1 cut(s)	13
MboI	GATC	1 cut(s)	224
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	4 cut(s)	166, 291, 348, 377
MnlI	CCTC	3 cut(s)	239, 391, 402
MseI	TTAA	4 cut(s)	20, 341, 347, 380
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	10, 116, 307
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	307, 365
NlaIV	GGNNCC	2 cut(s)	175, 226
NmeAIII	GCCGAG	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	15, 309
PpuMI	RGGWCCY	1 cut(s)	173
PshBI	ATTAAT	2 cut(s)	347, 380
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	175, 226
PspPI	GGNCC	1 cut(s)	173
PspPPI	RGGWCCY	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	224
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SaqAI	TTAA	4 cut(s)	20, 341, 347, 380
SatI	GCNGC	2 cut(s)	14, 308
Sau3AI	GATC	1 cut(s)	224
Sau96I	GGNCC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	4 cut(s)	166, 175, 339, 394
SfcI	CTRYAG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	4 cut(s)	166, 291, 348, 377
SsiI	CCGC	2 cut(s)	13, 77
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	9, 231
TasI	AATT	4 cut(s)	166, 291, 348, 377
TatI	WGTACW	1 cut(s)	50
TauI	GCSGC	1 cut(s)	16
Tru1I	TTAA	4 cut(s)	20, 341, 347, 380
Tru9I	TTAA	4 cut(s)	20, 341, 347, 380
TscAI	CASTG	2 cut(s)	44, 207
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	2 cut(s)	44, 207
VpaK11BI	GGWCC	1 cut(s)	173
VspI	ATTAAT	2 cut(s)	347, 380
XagI	CCTNNNNNAGG	1 cut(s)	168
XapI	RAATTY	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.