Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

44541337 .. 44557420

Gene Structure 16084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG359200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGATATGGGTGGTGGAAATTGGCACAGAGAAACAGTTACACGTGCACTTCGAGCGGCTTTTAACAACCCAGATGTTGTTCAGAGTATTCCAGAAACAGTGGAAGTTGCAGTGCCTGTGACTCATTTCCCTGTAAGTCAGGCAACAGAAACAGGCATAACCAATGCTCCACCTATCTCCGGAGCAGCTAATTCAGAAGCACTGTCCGGTGCTGGTGCTGGTGCTAGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCAATTCCAAACGTTGCGCTCAATGTTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAGCAAAACCCACAGCTTTTAAGTTTAATTCAGGAGCACCATGCCGAGTTCCTTCAGTTAATAAATAAACCTCTTGCGGGTTCTGAAGGAGGGGCGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

145

Amino Acids

15.36

Weight (kDa)

5.4

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XPC-binding	PF09280	81 - 136	9.6e-22	XPC-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	3 cut(s)	56, 413, 431
AclI	AACGTT	1 cut(s)	275
AclWI	GGATC	2 cut(s)	231, 244
AcsI	RAATTY	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	374
AcvI	CACGTG	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	179, 413
AflIII	ACRYGT	1 cut(s)	41
AluBI	AGCT	2 cut(s)	188, 352
AluI	AGCT	2 cut(s)	188, 352
Alw21I	GWGCWC	3 cut(s)	49, 232, 375
Alw44I	GTGCAC	2 cut(s)	45, 228
AlwI	GGATC	2 cut(s)	231, 244
AlwNI	CAGNNNCTG	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	179
ApaLI	GTGCAC	2 cut(s)	45, 228
ApeKI	GCWGC	2 cut(s)	185, 322
ApoI	RAATTY	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	282
BaeGI	GKGCMC	2 cut(s)	49, 232
BamHI	GGATCC	1 cut(s)	236
BbrPI	CACGTG	1 cut(s)	44
Bbv12I	GWGCWC	3 cut(s)	49, 232, 375
BbvI	GCAGC	2 cut(s)	197, 309
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	323
BisI	GCNGC	3 cut(s)	57, 186, 323
BlsI	GCNGC	3 cut(s)	58, 187, 324
BmiI	GGNNCC	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	44
BsaWI	WCCGGW	2 cut(s)	179, 206
BsaXI	ACNNNNNCTCC	3 cut(s)	151, 181, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 413
BseAI	TCCGGA	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	179, 413
BseSI	GKGCMC	2 cut(s)	49, 232
BseXI	GCAGC	2 cut(s)	197, 309
BsiHKAI	GWGCWC	3 cut(s)	49, 232, 375
BsiSI	CCGG	2 cut(s)	180, 207
BslI	CCNNNNNNNGG	2 cut(s)	179, 413
Bsp1286I	GDGCHC	3 cut(s)	49, 232, 375
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	3 cut(s)	56, 413, 431
BspEI	TCCGGA	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	327
BspPI	GGATC	2 cut(s)	231, 244
BsrBI	CCGCTC	1 cut(s)	56
BssMI	GATC	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	37, 100, 204
BstBAI	YACGTR	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 322
BstSFI	CTRYAG	1 cut(s)	323
BstSLI	GKGCMC	2 cut(s)	49, 232
BstV1I	GCAGC	2 cut(s)	197, 309
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	3 cut(s)	105, 117, 200
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	282
CviAII	CATG	2 cut(s)	319, 377
CviJI	RGCY	5 cut(s)	59, 188, 296, 316, 352
CviKI_1	RGCY	5 cut(s)	59, 188, 296, 316, 352
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	374
Eco72I	CACGTG	1 cut(s)	44
FaeI	CATG	2 cut(s)	322, 380
FaiI	YATR	4 cut(s)	8, 158, 320, 378
FatI	CATG	2 cut(s)	318, 376
FauI	CCCGC	1 cut(s)	406
Fnu4HI	GCNGC	3 cut(s)	57, 186, 323
Fsp4HI	GCNGC	3 cut(s)	57, 186, 323
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	3 cut(s)	57, 186, 323
HapII	CCGG	2 cut(s)	180, 207
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	322, 380
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	180, 207
Hpy166II	GTNNAC	2 cut(s)	47, 230
Hpy188I	TCNGA	3 cut(s)	84, 196, 421
Hpy188III	TCNNGA	3 cut(s)	92, 180, 368
Hpy8I	GTNNAC	2 cut(s)	47, 230
HpyAV	CCTTC	2 cut(s)	398, 416
HpyCH4III	ACNGT	3 cut(s)	37, 100, 204
HpyCH4IV	ACGT	2 cut(s)	43, 275
HpyCH4V	TGCA	4 cut(s)	47, 110, 230, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 322
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	2 cut(s)	43, 275
Hsp92II	CATG	2 cut(s)	322, 380
HspAI	GCGC	1 cut(s)	280
Kpn2I	TCCGGA	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	236
LmnI	GCTCC	3 cut(s)	172, 182, 370
Lsp1109I	GCAGC	2 cut(s)	197, 309
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	2 cut(s)	43, 275
MaeIII	GTNAC	3 cut(s)	37, 118, 288
MalI	GATC	1 cut(s)	238
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	1 cut(s)	236
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	3 cut(s)	49, 232, 375
MluCI	AATT	5 cut(s)	19, 190, 266, 306, 363
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	3 cut(s)	251, 417, 419
MroI	TCCGGA	1 cut(s)	179
MseI	TTAA	4 cut(s)	63, 356, 362, 395
MspI	CCGG	2 cut(s)	180, 207
MwoI	GCNNNNNNNGC	2 cut(s)	53, 322
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	322, 380
NlaIV	GGNNCC	1 cut(s)	238
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	58, 187, 324
PleI	GAGTC	1 cut(s)	115
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	44
Psp1406I	AACGTT	1 cut(s)	275
PspCI	CACGTG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	236
SaqAI	TTAA	4 cut(s)	63, 356, 362, 395
SatI	GCNGC	3 cut(s)	57, 186, 323
Sau3AI	GATC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	115
SduI	GDGCHC	3 cut(s)	49, 232, 375
SetI	ASST	6 cut(s)	46, 175, 190, 278, 354, 409
SfcI	CTRYAG	1 cut(s)	323
Sse9I	AATT	5 cut(s)	19, 190, 266, 306, 363
SsiI	CCGC	3 cut(s)	56, 413, 431
SspMI	CTAG	1 cut(s)	225
TaaI	ACNGT	3 cut(s)	37, 100, 204
TaiI	ACGT	2 cut(s)	46, 278
TaqI	TCGA	2 cut(s)	52, 243
TasI	AATT	5 cut(s)	19, 190, 266, 306, 363
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	4 cut(s)	63, 356, 362, 395
Tru9I	TTAA	4 cut(s)	63, 356, 362, 395
TscAI	CASTG	3 cut(s)	105, 117, 207
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	185, 322
Tsp45I	GTSAC	1 cut(s)	118
TspRI	CASTG	3 cut(s)	105, 117, 207
VneI	GTGCAC	2 cut(s)	45, 228
XapI	RAATTY	1 cut(s)	306
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.