Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

42032101 .. 42035914

Gene Structure 3814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGATATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCACTTCGAGCGGCTTTTAACAACCCGGAGCGATCGGTGGACTACTTTTACTCTCGGAAGTTGCGGTGCTGTGGCTCATTTCCCTGCAAGTCGTGCAACCGAAACAGCATAGCCAATGCTCCACCTATCTCCGGAGCACCTAATTCAGGTCCCCTGAATATGTTTCCGCAGGTAAGTGGGAAATCTTATAAGATGTTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

82

Amino Acids

9.1

Weight (kDa)

9.34

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA	PF00627	1 - 30	1.1e-06	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	205
AccBSI	CCGCTC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	176
AciI	CCGC	3 cut(s)	56, 109, 212
AcvI	CACGTG	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	176, 191
AflIII	ACRYGT	1 cut(s)	41
Alw21I	GWGCWC	2 cut(s)	49, 184
Alw44I	GTGCAC	1 cut(s)	45
Aor13HI	TCCGGA	1 cut(s)	176
ApaLI	GTGCAC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	49
BbrPI	CACGTG	1 cut(s)	44
Bbv12I	GWGCWC	2 cut(s)	49, 184
BcnI	CCSGG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 191
BseAI	TCCGGA	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	176, 191
BseSI	GKGCMC	1 cut(s)	49
Bsh1285I	CGRYCG	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	49, 184
BsiSI	CCGG	2 cut(s)	71, 177
BslFI	GGGAC	2 cut(s)	38, 180
BslI	CCNNNNNNNGG	2 cut(s)	176, 191
BsmFI	GGGAC	2 cut(s)	38, 180
Bsp1286I	GDGCHC	2 cut(s)	49, 184
Bsp13I	TCCGGA	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	77
BspACI	CCGC	3 cut(s)	56, 109, 212
BspEI	TCCGGA	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	56
BssMI	GATC	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	44
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	80
BstMBI	GATC	1 cut(s)	77
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 138
BstSCI	CCNGG	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	194
CviJI	RGCY	3 cut(s)	59, 120, 158
CviKI_1	RGCY	3 cut(s)	59, 120, 158
DpnI	GATC	1 cut(s)	79
DpnII	GATC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	194
Eco72I	CACGTG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	194
FaiI	YATR	4 cut(s)	8, 155, 206, 234
FaqI	GGGAC	2 cut(s)	38, 180
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
HapII	CCGG	2 cut(s)	71, 177
HpaII	CCGG	2 cut(s)	71, 177
Hpy166II	GTNNAC	2 cut(s)	47, 85
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	177
Hpy8I	GTNNAC	2 cut(s)	47, 85
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	47, 132, 141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 138
HpySE526I	ACGT	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	77
LmnI	GCTCC	3 cut(s)	73, 169, 179
LpnPI	CCDG	6 cut(s)	84, 142, 177, 190, 200, 212
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	79
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	1 cut(s)	77
MhlI	GDGCHC	2 cut(s)	49, 184
MluCI	AATT	2 cut(s)	19, 187
MroI	TCCGGA	1 cut(s)	176
MseI	TTAA	1 cut(s)	63
MspI	CCGG	2 cut(s)	71, 177
MspR9I	CCNGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	53, 138
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	58
Ple19I	CGATCG	1 cut(s)	80
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	194
PsiI	TTATAA	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	194
PspCI	CACGTG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	194
PspPPI	RGGWCCY	1 cut(s)	194
PvuI	CGATCG	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	77
Sau96I	GGNCC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	49, 184
SetI	ASST	5 cut(s)	46, 172, 187, 196, 219
SinI	GGWCC	1 cut(s)	194
Sse9I	AATT	2 cut(s)	19, 187
SsiI	CCGC	3 cut(s)	56, 109, 212
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	52
TasI	AATT	2 cut(s)	19, 187
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
VneI	GTGCAC	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.