Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000213.1

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Forward (+)

58593 .. 59971

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000213.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atggatatgggtggtggaaattgggacagagaaacaagtattccagaaacagcggaagttgcagtgcctatggctcatttccctgcaagtcaggcaaccgaaacaggcatagccaatgctccacctatctccggagcacctaattcaggtcccctgaatatgtttccgcaggaagcactgtccggtgctggtgctggcgcacttggatccctcgacttccttagaaacaatcatcagaaaagtgttcattgggattggacattcaccattttcaactctgccatcgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

96

Amino Acids

10.1

Weight (kDa)

4.52

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	131
AciI	CCGC	2 cut(s)	53, 167
AclWI	GGATC	2 cut(s)	201, 214
AfiI	CCNNNNNNNGG	2 cut(s)	131, 146
AgsI	TTSAA	1 cut(s)	274
Alw21I	GWGCWC	1 cut(s)	139
AlwI	GGATC	2 cut(s)	201, 214
Aor13HI	TCCGGA	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	139
BccI	CCATC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	151, 208
BsaWI	WCCGGW	2 cut(s)	131, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 146
BseAI	TCCGGA	1 cut(s)	131
BseLI	CCNNNNNNNGG	2 cut(s)	131, 146
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	132, 183
BslFI	GGGAC	2 cut(s)	38, 135
BslI	CCNNNNNNNGG	2 cut(s)	131, 146
BsmFI	GGGAC	2 cut(s)	38, 135
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	206
BspACI	CCGC	2 cut(s)	53, 167
BspEI	TCCGGA	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	151, 208
BspPI	GGATC	2 cut(s)	201, 214
BssMI	GATC	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	221
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 92
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 176
Cac8I	GCNNGC	1 cut(s)	196
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	149
CviJI	RGCY	2 cut(s)	74, 113
CviKI_1	RGCY	2 cut(s)	74, 113
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	149
FaiI	YATR	4 cut(s)	8, 71, 110, 161
FaqI	GGGAC	2 cut(s)	38, 135
FspBI	CTAG	1 cut(s)	289
GlaI	GCGC	1 cut(s)	199
HapII	CCGG	2 cut(s)	132, 183
HhaI	GCGC	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HpaII	CCGG	2 cut(s)	132, 183
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	2 cut(s)	44, 132
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	62, 86
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 92
HpyF3I	CTNAG	1 cut(s)	221
HspAI	GCGC	1 cut(s)	198
Kpn2I	TCCGGA	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	206
LmnI	GCTCC	2 cut(s)	124, 134
MaeI	CTAG	1 cut(s)	289
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	2 cut(s)	19, 142
MnlI	CCTC	1 cut(s)	221
MroI	TCCGGA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	132, 183
MwoI	GCNNNNNNNGC	2 cut(s)	59, 92
NdeII	GATC	1 cut(s)	206
NlaIV	GGNNCC	2 cut(s)	151, 208
PpuMI	RGGWCCY	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	151, 208
PspPI	GGNCC	1 cut(s)	149
PspPPI	RGGWCCY	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	206
Sau96I	GGNCC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	3 cut(s)	127, 142, 151
SinI	GGWCC	1 cut(s)	149
Sse9I	AATT	2 cut(s)	19, 142
SsiI	CCGC	2 cut(s)	53, 167
SspMI	CTAG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	213, 285
TasI	AATT	2 cut(s)	19, 142
TscAI	CASTG	2 cut(s)	69, 183
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	2 cut(s)	69, 183
VpaK11BI	GGWCC	1 cut(s)	149
XagI	CCTNNNNNAGG	1 cut(s)	144
XspI	CTAG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.