Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002700.1

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

21285 .. 23083

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002700.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgggtggtggaaattgggacagagaaacagttacacgcgcacttcgagcggcttttaacaacccagagaacagcggaagttgcagtgcatgtggctcatttccctgcaagtcaggcatagccaatgctccacctatctccggagcacctaattcaggtcccctgaatatctttctgcaggaagcactgtccggtgctggtgctggtgcacttggatccctcgacttccttagaaacaatcatcaggaccaaaagggagaaagggagcaggggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

91

Amino Acids

9.32

Weight (kDa)

5.66

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	50
AccII	CGCG	1 cut(s)	39
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	2 cut(s)	50, 75
AclWI	GGATC	2 cut(s)	210, 223
AfiI	CCNNNNNNNGG	2 cut(s)	140, 155
Alw21I	GWGCWC	2 cut(s)	148, 211
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	2 cut(s)	210, 223
Aor13HI	TCCGGA	1 cut(s)	140
ApaLI	GTGCAC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	158, 247
AvaII	GGWCC	2 cut(s)	158, 247
BaeGI	GKGCMC	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	215
Bbv12I	GWGCWC	2 cut(s)	148, 211
BfmI	CTRYAG	1 cut(s)	176
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme18I	GGWCC	2 cut(s)	158, 247
BmgT120I	GGNCC	2 cut(s)	158, 247
BmiI	GGNNCC	2 cut(s)	160, 217
BsaWI	WCCGGW	2 cut(s)	140, 191
BsaXI	ACNNNNNCTCC	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 155
BseAI	TCCGGA	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	140, 155
BseSI	GKGCMC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	39
BsiHKAI	GWGCWC	2 cut(s)	148, 211
BsiSI	CCGG	2 cut(s)	141, 192
BslFI	GGGAC	2 cut(s)	32, 144
BslI	CCNNNNNNNGG	2 cut(s)	140, 155
BsmFI	GGGAC	2 cut(s)	32, 144
Bsp1286I	GDGCHC	2 cut(s)	148, 211
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	215
BspACI	CCGC	2 cut(s)	50, 75
BspEI	TCCGGA	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	160, 217
BspMAI	CTGCAG	1 cut(s)	180
BspPI	GGATC	2 cut(s)	210, 223
BsrBI	CCGCTC	1 cut(s)	50
BssMI	GATC	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	31, 189
BstDEI	CTNAG	1 cut(s)	230
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 81, 114
BstNSI	RCATGY	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	91, 185
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	158, 247
CviAII	CATG	1 cut(s)	90
CviJI	RGCY	3 cut(s)	53, 96, 122
CviKI_1	RGCY	3 cut(s)	53, 96, 122
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	158, 247
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	158
FaeI	CATG	1 cut(s)	93
FaiI	YATR	2 cut(s)	91, 119
FaqI	GGGAC	2 cut(s)	32, 144
FatI	CATG	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	51
HapII	CCGG	2 cut(s)	141, 192
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	93
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HpaII	CCGG	2 cut(s)	141, 192
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188III	TCNNGA	2 cut(s)	141, 245
Hpy8I	GTNNAC	1 cut(s)	209
HpyCH4III	ACNGT	2 cut(s)	31, 189
HpyCH4V	TGCA	5 cut(s)	84, 89, 108, 178, 209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 81, 114
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	93
HspAI	GCGC	1 cut(s)	39
Kpn2I	TCCGGA	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	215
LmnI	GCTCC	3 cut(s)	133, 143, 265
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	217
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	1 cut(s)	215
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	2 cut(s)	148, 211
MluCI	AATT	2 cut(s)	13, 151
MnlI	CCTC	1 cut(s)	230
MroI	TCCGGA	1 cut(s)	140
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	75
MspI	CCGG	2 cut(s)	141, 192
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	47, 81, 114
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	93
NlaIV	GGNNCC	2 cut(s)	160, 217
NspI	RCATGY	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	160, 217
PspPI	GGNCC	2 cut(s)	158, 247
PspPPI	RGGWCCY	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	215
Sau96I	GGNCC	2 cut(s)	158, 247
SduI	GDGCHC	2 cut(s)	148, 211
SetI	ASST	3 cut(s)	136, 151, 160
SfcI	CTRYAG	1 cut(s)	176
SinI	GGWCC	2 cut(s)	158, 247
Sse9I	AATT	2 cut(s)	13, 151
SsiI	CCGC	2 cut(s)	50, 75
TaaI	ACNGT	2 cut(s)	31, 189
TaqI	TCGA	2 cut(s)	46, 222
TasI	AATT	2 cut(s)	13, 151
TauI	GCSGC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	2 cut(s)	91, 192
TspRI	CASTG	2 cut(s)	91, 192
VneI	GTGCAC	1 cut(s)	207
VpaK11BI	GGWCC	2 cut(s)	158, 247
XagI	CCTNNNNNAGG	1 cut(s)	153
XceI	RCATGY	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.