Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

6932649 .. 6933823

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATGTTAACTCTCTTGTGTTTCAATTGCAATGTGCATACTGATACCTATGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAATCTTGAGCAGACTATTCAACAGATAATGGATATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACATGTGCACTTCGAGCGGCTTTTAACAACCCGGAGCGAGCAGTGGACTACTTCGGAAGTTGCAGTGCTGTGGCTCATTTCCCTGCAAGTCGTGCAACCGAAACAGGCATAGCCAATGCTCCACCTATCTCCGGAGCACCTAATTCAGGTCCCCTGAATATGTTTCCGCAGTTCCAAACGTTGCGCTCAATGTTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAGCAACCCCCACAGCTTTTAAGATTAATTCAGGAGCACCATGCCGAGTTCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

148

Amino Acids

16.22

Weight (kDa)

5.71

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA	PF00627	31 - 67	1.1e-09	UBA/TS-N domain
XPC-binding	PF09280	106 - 147	7.4e-14	XPC-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	167
AccIII	TCCGGA	1 cut(s)	281
AciI	CCGC	2 cut(s)	167, 317
AclI	AACGTT	1 cut(s)	329
AcsI	RAATTY	2 cut(s)	67, 360
AfiI	CCNNNNNNNGG	2 cut(s)	281, 296
AflIII	ACRYGT	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	25, 104
AluBI	AGCT	2 cut(s)	59, 406
AluI	AGCT	2 cut(s)	59, 406
Alw21I	GWGCWC	3 cut(s)	160, 289, 429
Alw44I	GTGCAC	1 cut(s)	156
Aor13HI	TCCGGA	1 cut(s)	281
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	59, 376
ApoI	RAATTY	2 cut(s)	67, 360
AseI	ATTAAT	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	160
Bbv12I	GWGCWC	3 cut(s)	160, 289, 429
BbvI	GCAGC	2 cut(s)	46, 363
BcnI	CCSGG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	377
BisI	GCNGC	3 cut(s)	60, 168, 377
BlsI	GCNGC	3 cut(s)	61, 169, 378
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 296
Bse3DI	GCAATG	1 cut(s)	37
BseAI	TCCGGA	1 cut(s)	281
BseLI	CCNNNNNNNGG	2 cut(s)	281, 296
BseMI	GCAATG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	46, 363
BsiHKAI	GWGCWC	3 cut(s)	160, 289, 429
BsiSI	CCGG	2 cut(s)	182, 282
BslFI	GGGAC	2 cut(s)	149, 285
BslI	CCNNNNNNNGG	2 cut(s)	281, 296
BsmFI	GGGAC	2 cut(s)	149, 285
Bsp1286I	GDGCHC	3 cut(s)	160, 289, 429
Bsp13I	TCCGGA	1 cut(s)	281
BspACI	CCGC	2 cut(s)	167, 317
BspEI	TCCGGA	1 cut(s)	281
BspLI	GGNNCC	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	189
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 242, 376
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	377
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	46, 363
BtsI	GCAGTG	2 cut(s)	198, 220
BtsIMutI	CAGTG	2 cut(s)	198, 220
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	299
CseI	GACGC	1 cut(s)	51
CviAII	CATG	3 cut(s)	153, 373, 431
CviJI	RGCY	7 cut(s)	59, 170, 224, 263, 350, 370, 406
CviKI_1	RGCY	7 cut(s)	59, 170, 224, 263, 350, 370, 406
Eco47I	GGWCC	1 cut(s)	299
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	299
FaeI	CATG	3 cut(s)	156, 376, 434
FaiI	YATR	8 cut(s)	39, 51, 119, 154, 260, 311, 374, 432
FaqI	GGGAC	2 cut(s)	149, 285
FatI	CATG	3 cut(s)	152, 372, 430
Fnu4HI	GCNGC	3 cut(s)	60, 168, 377
Fsp4HI	GCNGC	3 cut(s)	60, 168, 377
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	3 cut(s)	60, 168, 377
HapII	CCGG	2 cut(s)	182, 282
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	3 cut(s)	156, 376, 434
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	2 cut(s)	182, 282
Hpy166II	GTNNAC	3 cut(s)	9, 158, 196
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	3 cut(s)	89, 282, 422
Hpy8I	GTNNAC	3 cut(s)	9, 158, 196
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	7 cut(s)	30, 37, 158, 213, 236, 245, 379
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 242, 376
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	3 cut(s)	156, 376, 434
HspAI	GCGC	1 cut(s)	334
Kpn2I	TCCGGA	1 cut(s)	281
KspAI	GTTAAC	1 cut(s)	9
LmnI	GCTCC	4 cut(s)	184, 274, 284, 424
LpnPI	CCDG	9 cut(s)	63, 195, 240, 246, 282, 295, 317, 365, 407
Lsp1109I	GCAGC	2 cut(s)	46, 363
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	148, 342
MbiI	CCGCTC	1 cut(s)	167
MfeI	CAATTG	1 cut(s)	25
MhlI	GDGCHC	3 cut(s)	160, 289, 429
MluCI	AATT	6 cut(s)	25, 67, 130, 292, 360, 417
MroI	TCCGGA	1 cut(s)	281
MseI	TTAA	4 cut(s)	8, 174, 410, 416
MspI	CCGG	2 cut(s)	182, 282
MspR9I	CCNGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	25
MwoI	GCNNNNNNNGC	3 cut(s)	164, 242, 376
NciI	CCSGG	1 cut(s)	182
NlaIII	CATG	3 cut(s)	156, 376, 434
NlaIV	GGNNCC	1 cut(s)	301
NspI	RCATGY	1 cut(s)	156
PciI	ACATGT	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	61, 169, 378
PpuMI	RGGWCCY	1 cut(s)	299
PscI	ACATGT	1 cut(s)	152
PshBI	ATTAAT	1 cut(s)	416
Psp1406I	AACGTT	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	381
SaqAI	TTAA	4 cut(s)	8, 174, 410, 416
SatI	GCNGC	3 cut(s)	60, 168, 377
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	3 cut(s)	160, 289, 429
SetI	ASST	7 cut(s)	50, 61, 277, 292, 301, 332, 408
SfcI	CTRYAG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	6 cut(s)	25, 67, 130, 292, 360, 417
SsiI	CCGC	2 cut(s)	167, 317
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	163
TasI	AATT	6 cut(s)	25, 67, 130, 292, 360, 417
TauI	GCSGC	1 cut(s)	170
Tru1I	TTAA	4 cut(s)	8, 174, 410, 416
Tru9I	TTAA	4 cut(s)	8, 174, 410, 416
TscAI	CASTG	2 cut(s)	198, 220
TseI	GCWGC	2 cut(s)	59, 376
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	2 cut(s)	198, 220
VneI	GTGCAC	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	299
VspI	ATTAAT	1 cut(s)	416
XagI	CCTNNNNNAGG	1 cut(s)	294
XapI	RAATTY	2 cut(s)	67, 360
XceI	RCATGY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.