Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

37807467 .. 37813199

Gene Structure 5733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00112590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAAGCTCACTGTAAAGACCCTCAAGGGCAGCCATTTCGAAATTAGGGTTCAGCCCACTGACACCGTGATGGGTGTTAAGAAGAACATTGAGGATATACAAGGGAAAGATAATTACCCGTGTGGGCAGCAGTTACTGATACACAATGGCAAAGTCTTGAAAGACGAAACTACCTTGGCCGACAACAAGGTCACTGAAGATGGTTTTCTTGTTGTCATGCTTAGTAAGAGTAAAACTACAGGCTTAGCAGGGGCTTCATCTGCTCAGCCTGCTTCTACAATTCCACCTACAACTGCACCAATCACAAATTCTACTACCAGAGCCGAAGCTCCCATACAAGCACCGCCCTCAGAGAGTACCACTCCTGCTTCAGACACCGCTAATGTGCATACTGATACCTATGGTCAAGCTGCGTCAAATTTAGTTGCTGGAACTAATCTTGATCAGACTATTCAACAGATAATGGATATGGGTGGTGGAAATTGGGACAGAGAAACAGTTACACGTGCACTTCGAGCGGCTTATAACAACCCAGAGCGAGCAGTGGACTACTTGTATTCTAGTATTCCAGAAACAGCGGAAGTTGCAGTGCCTGTGGCTCATTTCCCTGCAAGTCAGGCAACTGAAACAGGCATAGCCAATGCTCCACCTGTCTCCGGAGCACCTAATTCAGCTCCCCTGAATATGTTTCCGCAGGAAGCACTGTCCGGTGCTGGTGCTGGTGCACTTGGATCCCTCGACTTCCTTAGAAACAATCATCAGTTCCAAACGTTGCGCTCAATGGTACAAGCCAACCCACAAATTTTACAGCCCATGCTGCAGGAACTTGGAAAACAAAACCCCCAGCTTTTAAGATTAATTCAGGAGCACCATGCGGAGTTCCTTCAGTTAATAAATGAACCTCTTGAGGGTTCTGAAGGTGACATGTTTGAACAGCCTGATCAAGAAATGCCACATGCTATCAATGTAACTCCAGCGGAACAGGAGGCCATTGAACGACTTGAGGCAATGGGATTTGATAGAGCCTTGGTGATTGAGGCGTTTTTGGCATGTGACCGTAATGAAGAGCTGGCAGCCAACTATCTATTGGAGAATGCTGGAGATTTTGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

371

Amino Acids

40.0

Weight (kDa)

4.61

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 74	1.3e-06	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 76	2.9e-15	Ubiquitin family
UBA	PF00627	148 - 185	4.1e-11	UBA/TS-N domain
XPC-binding	PF09280	246 - 301	1.4e-22	XPC-binding domain
UBA	PF00627	327 - 362	2.5e-11	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AasI	GACNNNNNNGTC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	518
AccIII	TCCGGA	1 cut(s)	656
AciI	CCGC	7 cut(s)	344, 378, 518, 578, 692, 875, 977
AclI	AACGTT	1 cut(s)	770
AclWI	GGATC	2 cut(s)	726, 739
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	3 cut(s)	307, 418, 801
AcuI	CTGAAG	4 cut(s)	216, 354, 869, 936
AcvI	CACGTG	1 cut(s)	506
AfaI	GTAC	2 cut(s)	358, 786
AfiI	CCNNNNNNNGG	2 cut(s)	656, 908
AflIII	ACRYGT	2 cut(s)	503, 924
AgsI	TTSAA	5 cut(s)	160, 455, 932, 995, 1109
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	6 cut(s)	7, 329, 410, 674, 847, 1069
AluI	AGCT	6 cut(s)	7, 329, 410, 674, 847, 1069
Alw21I	GWGCWC	4 cut(s)	511, 664, 727, 870
Alw26I	GTCTC	1 cut(s)	658
Alw44I	GTGCAC	2 cut(s)	507, 723
AlwI	GGATC	2 cut(s)	726, 739
AlwNI	CAGNNNCTG	2 cut(s)	136, 593
Aor13HI	TCCGGA	1 cut(s)	656
AoxI	GGCC	2 cut(s)	177, 987
ApaLI	GTGCAC	2 cut(s)	507, 723
ApeKI	GCWGC	5 cut(s)	30, 127, 410, 817, 1073
ApoI	RAATTY	3 cut(s)	307, 418, 801
AseI	ATTAAT	1 cut(s)	857
AspLEI	GCGC	1 cut(s)	777
AsuHPI	GGTGA	2 cut(s)	932, 1042
AsuII	TTCGAA	1 cut(s)	39
BaeGI	GKGCMC	2 cut(s)	511, 727
BamHI	GGATCC	1 cut(s)	731
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
BbrPI	CACGTG	1 cut(s)	506
Bbv12I	GWGCWC	4 cut(s)	511, 664, 727, 870
BbvI	GCAGC	5 cut(s)	42, 139, 397, 804, 1085
BccI	CCATC	2 cut(s)	64, 194
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BclI	TGATCA	2 cut(s)	442, 940
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	2 cut(s)	237, 818
BisI	GCNGC	6 cut(s)	31, 128, 411, 519, 818, 1074
BlpI	GCTNAGC	2 cut(s)	244, 264
BlsI	GCNGC	6 cut(s)	32, 129, 412, 520, 819, 1075
BmiI	GGNNCC	1 cut(s)	733
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
BpmI	CTGGAG	1 cut(s)	957
Bpu1102I	GCTNAGC	2 cut(s)	244, 264
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	3 cut(s)	8, 926, 1022
BsaAI	YACGTR	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	174, 1026
BsaWI	WCCGGW	2 cut(s)	656, 707
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 908
Bse3DI	GCAATG	1 cut(s)	1014
BseAI	TCCGGA	1 cut(s)	656
BseDI	CCNNGG	2 cut(s)	174, 1026
BseLI	CCNNNNNNNGG	2 cut(s)	656, 908
BseMI	GCAATG	1 cut(s)	1014
BseMII	CTCAG	2 cut(s)	278, 363
BseSI	GKGCMC	2 cut(s)	511, 727
BseXI	GCAGC	5 cut(s)	42, 139, 397, 804, 1085
BseYI	CCCAGC	1 cut(s)	843
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	179, 989
BsiHKAI	GWGCWC	4 cut(s)	511, 664, 727, 870
BsiSI	CCGG	2 cut(s)	657, 708
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	656, 908
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	1099
BsnI	GGCC	2 cut(s)	179, 989
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	4 cut(s)	511, 664, 727, 870
Bsp13I	TCCGGA	1 cut(s)	656
Bsp143I	GATC	3 cut(s)	442, 731, 940
Bsp1720I	GCTNAGC	2 cut(s)	244, 264
BspACI	CCGC	7 cut(s)	344, 378, 518, 578, 692, 875, 977
BspANI	GGCC	2 cut(s)	179, 989
BspCNI	CTCAG	2 cut(s)	277, 362
BspEI	TCCGGA	1 cut(s)	656
BspLI	GGNNCC	1 cut(s)	733
BspMAI	CTGCAG	1 cut(s)	822
BspPI	GGATC	2 cut(s)	726, 739
BspQI	GCTCTTC	1 cut(s)	1059
BspT104I	TTCGAA	1 cut(s)	39
BsrBI	CCGCTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	1014
BssECI	CCNNGG	2 cut(s)	174, 1026
BssMI	GATC	3 cut(s)	442, 731, 940
BssT1I	CCWWGG	2 cut(s)	174, 1026
Bst4CI	ACNGT	5 cut(s)	13, 67, 499, 705, 1058
Bst6I	CTCTTC	1 cut(s)	1059
BstBAI	YACGTR	1 cut(s)	506
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	270, 540, 1071
BstDEI	CTNAG	5 cut(s)	221, 244, 264, 349, 746
BstHHI	GCGC	1 cut(s)	777
BstKTI	GATC	3 cut(s)	445, 734, 943
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	3 cut(s)	442, 731, 940
BstMWI	GCNNNNNNNGC	7 cut(s)	260, 269, 515, 584, 617, 817, 1046
BstNSI	RCATGY	3 cut(s)	928, 959, 1053
BstSFI	CTRYAG	2 cut(s)	237, 818
BstSLI	GKGCMC	2 cut(s)	511, 727
BstV1I	GCAGC	5 cut(s)	42, 139, 397, 804, 1085
BstX2I	RGATCY	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	731
BsuRI	GGCC	2 cut(s)	179, 989
BtsI	GCAGTG	2 cut(s)	549, 594
BtsIMutI	CAGTG	6 cut(s)	9, 57, 192, 549, 594, 701
Cac8I	GCNNGC	3 cut(s)	270, 540, 1071
CaiI	CAGNNNCTG	2 cut(s)	136, 593
CfoI	GCGC	1 cut(s)	777
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	2 cut(s)	357, 785
CviAII	CATG	6 cut(s)	217, 814, 872, 925, 956, 1050
CviQI	GTAC	2 cut(s)	357, 785
DdeI	CTNAG	5 cut(s)	221, 244, 264, 349, 746
DpnI	GATC	3 cut(s)	444, 733, 942
DpnII	GATC	3 cut(s)	442, 731, 940
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	1059
EarI	CTCTTC	1 cut(s)	1059
Eco130I	CCWWGG	2 cut(s)	174, 1026
Eco57I	CTGAAG	4 cut(s)	216, 354, 869, 936
Eco72I	CACGTG	1 cut(s)	506
EcoT14I	CCWWGG	2 cut(s)	174, 1026
ErhI	CCWWGG	2 cut(s)	174, 1026
FaeI	CATG	6 cut(s)	220, 817, 875, 928, 959, 1053
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	6 cut(s)	216, 813, 871, 924, 955, 1049
FbaI	TGATCA	2 cut(s)	442, 940
Fnu4HI	GCNGC	6 cut(s)	31, 128, 411, 519, 818, 1074
Fsp4HI	GCNGC	6 cut(s)	31, 128, 411, 519, 818, 1074
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	1 cut(s)	776
GluI	GCNGC	6 cut(s)	31, 128, 411, 519, 818, 1074
GsaI	CCCAGC	1 cut(s)	847
GsuI	CTGGAG	1 cut(s)	957
HaeIII	GGCC	2 cut(s)	179, 989
HapII	CCGG	2 cut(s)	657, 708
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	1 cut(s)	777
Hin1II	CATG	6 cut(s)	220, 817, 875, 928, 959, 1053
Hin6I	GCGC	1 cut(s)	775
HinP1I	GCGC	1 cut(s)	775
HpaII	CCGG	2 cut(s)	657, 708
HphI	GGTGA	2 cut(s)	932, 1042
Hpy166II	GTNNAC	3 cut(s)	509, 547, 725
Hpy188I	TCNGA	4 cut(s)	352, 373, 447, 916
Hpy188III	TCNNGA	7 cut(s)	157, 440, 569, 657, 863, 905, 944
Hpy8I	GTNNAC	3 cut(s)	509, 547, 725
HpyAV	CCTTC	2 cut(s)	893, 911
HpyCH4III	ACNGT	5 cut(s)	13, 67, 499, 705, 1058
HpyCH4IV	ACGT	2 cut(s)	505, 770
HpyCH4V	TGCA	7 cut(s)	296, 388, 509, 587, 611, 725, 820
HpyF10VI	GCNNNNNNNGC	7 cut(s)	260, 269, 515, 584, 617, 817, 1046
HpyF3I	CTNAG	5 cut(s)	221, 244, 264, 349, 746
HpySE526I	ACGT	2 cut(s)	505, 770
Hsp92II	CATG	6 cut(s)	220, 817, 875, 928, 959, 1053
HspAI	GCGC	1 cut(s)	775
Kpn2I	TCCGGA	1 cut(s)	656
Ksp22I	TGATCA	2 cut(s)	442, 940
Kzo9I	GATC	3 cut(s)	442, 731, 940
LguI	GCTCTTC	1 cut(s)	1059
LmnI	GCTCC	5 cut(s)	334, 649, 659, 679, 865
Lsp1109I	GCAGC	5 cut(s)	42, 139, 397, 804, 1085
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	2 cut(s)	505, 770
MaeIII	GTNAC	6 cut(s)	132, 190, 499, 920, 967, 1052
MalI	GATC	3 cut(s)	444, 733, 942
MbiI	CCGCTC	1 cut(s)	518
MboI	GATC	3 cut(s)	442, 731, 940
MboII	GAAGA	3 cut(s)	94, 209, 1076
MflI	RGATCY	1 cut(s)	731
MhlI	GDGCHC	4 cut(s)	511, 664, 727, 870
MluCI	AATT	9 cut(s)	42, 112, 279, 307, 418, 481, 667, 801, 858
MnlI	CCTC	9 cut(s)	32, 85, 358, 746, 901, 912, 979, 997, 1030
MroI	TCCGGA	1 cut(s)	656
MseI	TTAA	4 cut(s)	78, 851, 857, 890
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	2 cut(s)	578, 977
MspI	CCGG	2 cut(s)	657, 708
Mva1269I	GAATGC	1 cut(s)	1099
MwoI	GCNNNNNNNGC	7 cut(s)	260, 269, 515, 584, 617, 817, 1046
NdeII	GATC	3 cut(s)	442, 731, 940
NlaIII	CATG	6 cut(s)	220, 817, 875, 928, 959, 1053
NlaIV	GGNNCC	1 cut(s)	733
NmuCI	GTSAC	3 cut(s)	190, 920, 1052
NspI	RCATGY	3 cut(s)	928, 959, 1053
NspV	TTCGAA	1 cut(s)	39
PciI	ACATGT	1 cut(s)	924
PciSI	GCTCTTC	1 cut(s)	1059
PcsI	WCGNNNNNNNCGW	1 cut(s)	511
PctI	GAATGC	1 cut(s)	1099
PkrI	GCNGC	6 cut(s)	32, 129, 412, 520, 819, 1075
PmaCI	CACGTG	1 cut(s)	506
PmlI	CACGTG	1 cut(s)	506
Ppu21I	YACGTR	1 cut(s)	506
PscI	ACATGT	1 cut(s)	924
PshBI	ATTAAT	1 cut(s)	857
PsiI	TTATAA	1 cut(s)	525
Psp1406I	AACGTT	1 cut(s)	770
PspCI	CACGTG	1 cut(s)	506
PspFI	CCCAGC	1 cut(s)	843
PspN4I	GGNNCC	1 cut(s)	733
PstI	CTGCAG	1 cut(s)	822
PstNI	CAGNNNCTG	2 cut(s)	136, 593
PsuI	RGATCY	1 cut(s)	731
RsaI	GTAC	2 cut(s)	358, 786
RsaNI	GTAC	2 cut(s)	357, 785
RseI	CAYNNNNRTG	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	1059
SaqAI	TTAA	4 cut(s)	78, 851, 857, 890
SatI	GCNGC	6 cut(s)	31, 128, 411, 519, 818, 1074
Sau3AI	GATC	3 cut(s)	442, 731, 940
SduI	GDGCHC	4 cut(s)	511, 664, 727, 870
SfcI	CTRYAG	2 cut(s)	237, 818
SfuI	TTCGAA	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	3 cut(s)	23, 905, 1001
SmoI	CTYRAG	3 cut(s)	23, 905, 1001
Sse9I	AATT	9 cut(s)	42, 112, 279, 307, 418, 481, 667, 801, 858
SsiI	CCGC	7 cut(s)	344, 378, 518, 578, 692, 875, 977
SspMI	CTAG	1 cut(s)	561
StyI	CCWWGG	2 cut(s)	174, 1026
TaaI	ACNGT	5 cut(s)	13, 67, 499, 705, 1058
TaiI	ACGT	2 cut(s)	508, 773
TaqI	TCGA	3 cut(s)	39, 514, 738
TasI	AATT	9 cut(s)	42, 112, 279, 307, 418, 481, 667, 801, 858
TauI	GCSGC	1 cut(s)	521
Tru1I	TTAA	4 cut(s)	78, 851, 857, 890
Tru9I	TTAA	4 cut(s)	78, 851, 857, 890
TscAI	CASTG	6 cut(s)	16, 64, 199, 549, 594, 708
TseFI	GTSAC	3 cut(s)	190, 920, 1052
TseI	GCWGC	5 cut(s)	30, 127, 410, 817, 1073
Tsp45I	GTSAC	3 cut(s)	190, 920, 1052
TspDTI	ATGAA	4 cut(s)	17, 246, 912, 1077
TspRI	CASTG	6 cut(s)	16, 64, 199, 549, 594, 708
VneI	GTGCAC	2 cut(s)	507, 723
VspI	ATTAAT	1 cut(s)	857
XapI	RAATTY	3 cut(s)	307, 418, 801
XceI	RCATGY	3 cut(s)	928, 959, 1053
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1084
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.