Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003731.1

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

82210 .. 84029

Gene Structure 1820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003731.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atggatatgggtggtggaaattgggacagagaaacagttacacgtgcacttcgagcggcttataacaacccagagcgagcagtggactacttgtattccagtattccagaaacagcggaagttgcagtgcctgtggctcatttccctgcaagtcaggcaactgaaacaggcatagccaatgctccacctgtatccggagcacctaattcagctcccctgaatatgtttccgcaggaagcactgtccggtgctggtgctggcgctggtgcacttggatccctcgacttccttagaaacaatcatcagttccaaacattgcgctcaatggtacaagccaacccacaaattttacagcccatgctgcaggaacttggaaagcaaaacctccagcttttaagattaattcaggagcaccatgctgagttccttcaattaataaatgaacctcttgagggttctgaaggtgacatgtttgaacagcctgatcaagaaatgccacatgctatcaatgtaactccagcggaacaggaggccattgaacgacttgaggcaatgggatttgatagagccttggtgattgaggcctttttggcatgtgaccgtaatgaagagctggcagccaactatctattggagaatgctggagatttcgaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

219

Amino Acids

23.91

Weight (kDa)

4.33

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AccBSI	CCGCTC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	194
AciI	CCGC	4 cut(s)	56, 116, 230, 521
AclWI	GGATC	2 cut(s)	270, 283
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	480
AcvI	CACGTG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	2 cut(s)	194, 452
AflIII	ACRYGT	2 cut(s)	41, 468
AgsI	TTSAA	3 cut(s)	431, 476, 539
AluBI	AGCT	3 cut(s)	212, 391, 613
AluI	AGCT	3 cut(s)	212, 391, 613
Alw21I	GWGCWC	4 cut(s)	49, 202, 271, 414
Alw44I	GTGCAC	2 cut(s)	45, 267
AlwI	GGATC	2 cut(s)	270, 283
AlwNI	CAGNNNCTG	1 cut(s)	131
Aor13HI	TCCGGA	1 cut(s)	194
AoxI	GGCC	2 cut(s)	531, 582
ApaLI	GTGCAC	2 cut(s)	45, 267
ApeKI	GCWGC	2 cut(s)	361, 617
ApoI	RAATTY	1 cut(s)	345
AseI	ATTAAT	2 cut(s)	401, 434
AspLEI	GCGC	2 cut(s)	263, 321
AsuHPI	GGTGA	2 cut(s)	476, 586
AsuII	TTCGAA	1 cut(s)	651
BaeGI	GKGCMC	2 cut(s)	49, 271
BamHI	GGATCC	1 cut(s)	275
BbrPI	CACGTG	1 cut(s)	44
Bbv12I	GWGCWC	4 cut(s)	49, 202, 271, 414
BbvI	GCAGC	2 cut(s)	348, 629
BciVI	GTATCC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	484
BfmI	CTRYAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	590
BisI	GCNGC	3 cut(s)	57, 362, 618
BlsI	GCNGC	3 cut(s)	58, 363, 619
BmiI	GGNNCC	1 cut(s)	277
BpmI	CTGGAG	2 cut(s)	371, 501
Bpu14I	TTCGAA	1 cut(s)	651
BpuEI	CTTGAG	2 cut(s)	470, 566
BsaAI	YACGTR	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	570
BsaWI	WCCGGW	2 cut(s)	194, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 452
Bse1I	ACTGG	1 cut(s)	99
Bse3DI	GCAATG	2 cut(s)	314, 558
BseAI	TCCGGA	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	570
BseLI	CCNNNNNNNGG	2 cut(s)	194, 452
BseMI	GCAATG	2 cut(s)	314, 558
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	99
BseSI	GKGCMC	2 cut(s)	49, 271
BseXI	GCAGC	2 cut(s)	348, 629
BshFI	GGCC	2 cut(s)	533, 584
BsiHKAI	GWGCWC	4 cut(s)	49, 202, 271, 414
BsiSI	CCGG	2 cut(s)	195, 246
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	2 cut(s)	194, 452
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	533, 584
Bsp119I	TTCGAA	1 cut(s)	651
Bsp1286I	GDGCHC	4 cut(s)	49, 202, 271, 414
Bsp13I	TCCGGA	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	275, 484
BspACI	CCGC	4 cut(s)	56, 116, 230, 521
BspANI	GGCC	2 cut(s)	533, 584
BspCNI	CTCAG	1 cut(s)	412
BspEI	TCCGGA	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	2 cut(s)	270, 283
BspQI	GCTCTTC	1 cut(s)	603
BspT104I	TTCGAA	1 cut(s)	651
BsrBI	CCGCTC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	314, 558
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	2 cut(s)	275, 484
BssT1I	CCWWGG	1 cut(s)	570
Bst4CI	ACNGT	3 cut(s)	37, 243, 602
Bst6I	CTCTTC	1 cut(s)	603
BstBAI	YACGTR	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	651
BstC8I	GCNNGC	3 cut(s)	78, 259, 615
BstDEI	CTNAG	2 cut(s)	290, 420
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	2 cut(s)	263, 321
BstKTI	GATC	2 cut(s)	278, 487
BstMBI	GATC	2 cut(s)	275, 484
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 122, 155, 361, 590
BstNSI	RCATGY	3 cut(s)	472, 503, 597
BstSFI	CTRYAG	1 cut(s)	362
BstSLI	GKGCMC	2 cut(s)	49, 271
BstV1I	GCAGC	2 cut(s)	348, 629
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	533, 584
BtsI	GCAGTG	2 cut(s)	87, 132
BtsIMutI	CAGTG	3 cut(s)	87, 132, 239
Cac8I	GCNNGC	3 cut(s)	78, 259, 615
CaiI	CAGNNNCTG	1 cut(s)	131
CfoI	GCGC	2 cut(s)	263, 321
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	5 cut(s)	358, 416, 469, 500, 594
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	2 cut(s)	290, 420
DpnI	GATC	2 cut(s)	277, 486
DpnII	GATC	2 cut(s)	275, 484
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco130I	CCWWGG	1 cut(s)	570
Eco147I	AGGCCT	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	480
Eco72I	CACGTG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	5 cut(s)	361, 419, 472, 503, 597
FaiI	YATR	9 cut(s)	8, 63, 173, 224, 359, 417, 470, 501, 595
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	5 cut(s)	357, 415, 468, 499, 593
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	3 cut(s)	57, 362, 618
Fsp4HI	GCNGC	3 cut(s)	57, 362, 618
GlaI	GCGC	2 cut(s)	262, 320
GluI	GCNGC	3 cut(s)	57, 362, 618
GsuI	CTGGAG	2 cut(s)	371, 501
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	533, 584
HapII	CCGG	2 cut(s)	195, 246
HhaI	GCGC	2 cut(s)	263, 321
Hin1II	CATG	5 cut(s)	361, 419, 472, 503, 597
Hin6I	GCGC	2 cut(s)	261, 319
HinP1I	GCGC	2 cut(s)	261, 319
HpaII	CCGG	2 cut(s)	195, 246
HphI	GGTGA	2 cut(s)	476, 586
Hpy166II	GTNNAC	3 cut(s)	47, 85, 269
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	5 cut(s)	107, 195, 407, 449, 488
Hpy8I	GTNNAC	3 cut(s)	47, 85, 269
HpyAV	CCTTC	2 cut(s)	437, 455
HpyCH4III	ACNGT	3 cut(s)	37, 243, 602
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	5 cut(s)	47, 125, 149, 269, 364
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 122, 155, 361, 590
HpyF3I	CTNAG	2 cut(s)	290, 420
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	5 cut(s)	361, 419, 472, 503, 597
HspAI	GCGC	2 cut(s)	261, 319
Kpn2I	TCCGGA	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	275, 484
LguI	GCTCTTC	1 cut(s)	603
LmnI	GCTCC	4 cut(s)	187, 197, 217, 409
Lsp1109I	GCAGC	2 cut(s)	348, 629
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	4 cut(s)	37, 464, 511, 596
MalI	GATC	2 cut(s)	277, 486
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	2 cut(s)	275, 484
MboII	GAAGA	1 cut(s)	620
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	4 cut(s)	49, 202, 271, 414
MluCI	AATT	5 cut(s)	19, 205, 345, 402, 431
MnlI	CCTC	7 cut(s)	290, 395, 445, 456, 523, 541, 574
MroI	TCCGGA	1 cut(s)	194
MseI	TTAA	3 cut(s)	395, 401, 434
MspA1I	CMGCKG	2 cut(s)	116, 521
MspI	CCGG	2 cut(s)	195, 246
Mva1269I	GAATGC	1 cut(s)	643
MwoI	GCNNNNNNNGC	5 cut(s)	53, 122, 155, 361, 590
NdeII	GATC	2 cut(s)	275, 484
NlaIII	CATG	5 cut(s)	361, 419, 472, 503, 597
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	464, 596
NspI	RCATGY	3 cut(s)	472, 503, 597
NspV	TTCGAA	1 cut(s)	651
PceI	AGGCCT	1 cut(s)	584
PciI	ACATGT	1 cut(s)	468
PciSI	GCTCTTC	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PctI	GAATGC	1 cut(s)	643
PkrI	GCNGC	3 cut(s)	58, 363, 619
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	44
PscI	ACATGT	1 cut(s)	468
PshBI	ATTAAT	2 cut(s)	401, 434
PsiI	TTATAA	1 cut(s)	63
PspCI	CACGTG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	3 cut(s)	395, 401, 434
SatI	GCNGC	3 cut(s)	57, 362, 618
Sau3AI	GATC	2 cut(s)	275, 484
SduI	GDGCHC	4 cut(s)	49, 202, 271, 414
SetI	ASST	9 cut(s)	46, 190, 205, 214, 387, 393, 448, 466, 615
SfcI	CTRYAG	1 cut(s)	362
SfuI	TTCGAA	1 cut(s)	651
SmlI	CTYRAG	2 cut(s)	449, 545
SmoI	CTYRAG	2 cut(s)	449, 545
Sse9I	AATT	5 cut(s)	19, 205, 345, 402, 431
SseBI	AGGCCT	1 cut(s)	584
SsiI	CCGC	4 cut(s)	56, 116, 230, 521
StuI	AGGCCT	1 cut(s)	584
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	37, 243, 602
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	3 cut(s)	52, 282, 651
TasI	AATT	5 cut(s)	19, 205, 345, 402, 431
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	3 cut(s)	395, 401, 434
Tru9I	TTAA	3 cut(s)	395, 401, 434
TscAI	CASTG	3 cut(s)	87, 132, 246
TseFI	GTSAC	2 cut(s)	464, 596
TseI	GCWGC	2 cut(s)	361, 617
Tsp45I	GTSAC	2 cut(s)	464, 596
TspDTI	ATGAA	2 cut(s)	456, 621
TspRI	CASTG	3 cut(s)	87, 132, 246
VneI	GTGCAC	2 cut(s)	45, 267
VspI	ATTAAT	2 cut(s)	401, 434
XapI	RAATTY	1 cut(s)	345
XceI	RCATGY	3 cut(s)	472, 503, 597
XcmI	CCANNNNNNNNNTGG	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.