Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Forward (+)

6235895 .. 6238799

Gene Structure 2905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCGAAGAATCATCCCGATGAGGATGAAACAAACCTATCCTCTGCCGTTGATTTTCACCTTCGTGATCGCTTCAAACTAGAATATTCAGCTGAGAATGAAACTATGATAGAGAGATCTGTGCTGATACATAGAGCGGTGTTGAGCTCTGTTGAGCGTCTTTTTGCCATATTGTTGGAACAGTACAAAGGAAAATTCCCCTTCTGGCTTAGTCCCCGCCAGGCCATAGTTTGCTCTGTTTCAGAGGATTATCGTTCCTACGCAGACAAGGTGAGAGATCAAATTCACGAAGCTGGCTACTATGTTGATGTTGACACAACGGATAGAAACGTCAGTGACAAGGTGCAAGAAGCTCAGGTTGCACACTACAACTACATACTAGTCGTGGGTGATGAAGAGGCTAGAACGGGACAGGTGACTGTTTGGCTTAGAGACGAAATGATGAGCATCGAGACTCTGTCGGATGAATTCAAATTGAAGACGGCCAACTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

165

Amino Acids

19.21

Weight (kDa)

4.86

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	74 - 151	3.1e-15	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	137
AciI	CCGC	2 cut(s)	137, 217
AcoI	YGGCCR	1 cut(s)	483
AcsI	RAATTY	3 cut(s)	194, 282, 467
AfaI	GTAC	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	76, 472, 478
AhlI	ACTAGT	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	219
AleI	CACNNNNGTG	1 cut(s)	63
AluBI	AGCT	4 cut(s)	92, 147, 293, 353
AluI	AGCT	4 cut(s)	92, 147, 293, 353
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	2 cut(s)	426, 446
AoxI	GGCC	2 cut(s)	222, 483
ApoI	RAATTY	3 cut(s)	194, 282, 467
AsuHPI	GGTGA	4 cut(s)	50, 283, 401, 427
BanII	GRGCYC	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	221
BcoDI	GTCTC	2 cut(s)	426, 446
BcuI	ACTAGT	1 cut(s)	379
BfaI	CTAG	3 cut(s)	80, 380, 402
BglII	AGATCT	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	446
Bse8I	GATNNNNATC	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	221
BseGI	GGATG	3 cut(s)	13, 31, 469
BseJI	GATNNNNATC	1 cut(s)	446
BseMII	CTCAG	2 cut(s)	84, 368
BshFI	GGCC	2 cut(s)	224, 485
BsiHKAI	GWGCWC	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	198, 423
BsmAI	GTCTC	2 cut(s)	426, 446
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	2 cut(s)	198, 423
BsnI	GGCC	2 cut(s)	224, 485
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	67, 116, 277
BspACI	CCGC	2 cut(s)	137, 217
BspANI	GGCC	2 cut(s)	224, 485
BspCNI	CTCAG	2 cut(s)	85, 367
BsrBI	CCGCTC	1 cut(s)	137
BssMI	GATC	3 cut(s)	67, 116, 277
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	183, 421
Bst6I	CTCTTC	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	4 cut(s)	93, 209, 354, 428
BstF5I	GGATG	3 cut(s)	13, 31, 469
BstKTI	GATC	3 cut(s)	70, 119, 280
BstMAI	GTCTC	2 cut(s)	426, 446
BstMBI	GATC	3 cut(s)	67, 116, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	224, 485
BtsCI	GGATG	3 cut(s)	13, 31, 469
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	295
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	184
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	4 cut(s)	93, 209, 354, 428
DpnI	GATC	3 cut(s)	69, 118, 279
DpnII	GATC	3 cut(s)	67, 116, 277
EaeI	YGGCCR	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Ecl136II	GAGCTC	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	147
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	426
FaiI	YATR	6 cut(s)	107, 132, 170, 227, 303, 377
FaqI	GGGAC	2 cut(s)	198, 423
FauI	CCCGC	1 cut(s)	224
FokI	GGATG	2 cut(s)	38, 476
FriOI	GRGCYC	1 cut(s)	149
FspBI	CTAG	3 cut(s)	80, 380, 402
HaeIII	GGCC	2 cut(s)	224, 485
HgaI	GACGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	2 cut(s)	10, 454
HphI	GGTGA	4 cut(s)	50, 283, 401, 427
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	244, 463
Hpy188III	TCNNGA	4 cut(s)	17, 65, 287, 451
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	71, 211
HpyCH4III	ACNGT	2 cut(s)	183, 421
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	2 cut(s)	346, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	4 cut(s)	93, 209, 354, 428
HpySE526I	ACGT	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	67, 116, 277
LpnPI	CCDG	6 cut(s)	190, 206, 233, 279, 341, 398
LweI	GCATC	1 cut(s)	456
MaeI	CTAG	3 cut(s)	80, 380, 402
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	335, 415
MalI	GATC	3 cut(s)	69, 118, 279
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	3 cut(s)	67, 116, 277
MboII	GAAGA	3 cut(s)	19, 407, 490
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	4 cut(s)	194, 282, 467, 473
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	2 cut(s)	156, 441
MnlI	CCTC	4 cut(s)	16, 52, 238, 391
MslI	CAYNNNNRTG	2 cut(s)	18, 63
MspA1I	CMGCKG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	359
NdeII	GATC	3 cut(s)	67, 116, 277
NmuCI	GTSAC	2 cut(s)	335, 415
OliI	CACNNNNGTG	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	10
PflFI	GACNNNGTC	1 cut(s)	457
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	116
PsyI	GACNNNGTC	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	2 cut(s)	18, 63
SacI	GAGCTC	1 cut(s)	149
Sau3AI	GATC	3 cut(s)	67, 116, 277
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	149
SfaNI	GCATC	1 cut(s)	456
SmiMI	CAYNNNNRTG	2 cut(s)	18, 63
SpeI	ACTAGT	1 cut(s)	379
Sse9I	AATT	4 cut(s)	194, 282, 467, 473
SsiI	CCGC	2 cut(s)	137, 217
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	3 cut(s)	80, 380, 402
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	183, 421
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	5, 450
TasI	AATT	4 cut(s)	194, 282, 467, 473
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	10
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	2 cut(s)	335, 415
Tsp45I	GTSAC	2 cut(s)	335, 415
TspDTI	ATGAA	4 cut(s)	42, 114, 408, 480
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	340
Tth111I	GACNNNGTC	1 cut(s)	457
XapI	RAATTY	3 cut(s)	194, 282, 467
XspI	CTAG	3 cut(s)	80, 380, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.