Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Forward (+)

14193509 .. 14201478

Gene Structure 7970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG153200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGATACACAGAGCTGTATTCGGCTCCTTTGAGCGTTTCTTTGGTATACTTTTGGAGCAGTACTACAAAGGAAAATGGCCCTTCTGGCTTAGTCCACGTCAGGCAATTGTTTGCCCCGTCTCAGAGAAATCCGAGGCTTATGCTCTACAGGTTCAGGAACGGATTCGTCTCGCTGGTTATCATGTTGATGTTGACACAAGTGATAGATCCGTGAGTAAAAAGGTGCGAGAAGCTCAGGTGGCACAATACAACTACGTTCTAGTTGTTGGTGAGAAGGAAGCCAAAATTGACCAGGTGAGCTTACGGGCTAGAGATACAGAAGATGAAGATGTCACAGTAATGGGCATTGGTGATCTTCTCCAATTCTTCAAAGACGAAGTTGAAGCTTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

131

Amino Acids

15.16

Weight (kDa)

5.39

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	34 - 124	1.8e-18	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	46
AclWI	GGATC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	370, 383
AjiI	CACGTC	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	4 cut(s)	14, 233, 300, 386
AluI	AGCT	4 cut(s)	14, 233, 300, 386
Alw26I	GTCTC	2 cut(s)	124, 173
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	3 cut(s)	281, 307, 362
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	124, 173
BfaI	CTAG	2 cut(s)	260, 309
BfmI	CTRYAG	1 cut(s)	146
BglI	GCCNNNNNGGC	1 cut(s)	85
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	293
BmgBI	CACGTC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	135, 248
BshFI	GGCC	1 cut(s)	79
BsmAI	GTCTC	2 cut(s)	124, 173
BsmBI	CGTCTC	2 cut(s)	124, 173
BsnI	GGCC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	206, 352
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	2 cut(s)	134, 247
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	2 cut(s)	206, 352
BssNAI	GTATAC	1 cut(s)	47
Bst1107I	GTATAC	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	337
BstDEI	CTNAG	3 cut(s)	89, 121, 234
BstKTI	GATC	2 cut(s)	209, 355
BstMAI	GTCTC	2 cut(s)	124, 173
BstMBI	GATC	2 cut(s)	206, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 239
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BstZ17I	GTATAC	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	79
BtrI	CACGTC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	78
CsiI	ACCWGGT	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	182
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	89, 121, 234
DpnI	GATC	2 cut(s)	208, 354
DpnII	GATC	2 cut(s)	206, 352
EcoRII	CCWGG	1 cut(s)	291
Esp3I	CGTCTC	2 cut(s)	124, 173
FaeI	CATG	1 cut(s)	185
FaiI	YATR	3 cut(s)	47, 141, 183
FatI	CATG	1 cut(s)	181
FblI	GTMKAC	1 cut(s)	46
FspBI	CTAG	2 cut(s)	260, 309
HaeIII	GGCC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	1 cut(s)	163
HphI	GGTGA	3 cut(s)	281, 307, 362
Hpy166II	GTNNAC	3 cut(s)	47, 95, 193
Hpy188I	TCNGA	2 cut(s)	124, 133
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	3 cut(s)	47, 95, 193
HpyAV	CCTTC	2 cut(s)	91, 268
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	2 cut(s)	97, 255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 239
HpyF3I	CTNAG	3 cut(s)	89, 121, 234
HpySE526I	ACGT	2 cut(s)	97, 255
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	2 cut(s)	206, 352
LmnI	GCTCC	2 cut(s)	29, 55
LpnPI	CCDG	8 cut(s)	70, 86, 134, 140, 159, 221, 278, 305
MabI	ACCWGGT	1 cut(s)	291
MaeI	CTAG	2 cut(s)	260, 309
MaeII	ACGT	2 cut(s)	97, 255
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	2 cut(s)	208, 354
MboI	GATC	2 cut(s)	206, 352
MboII	GAAGA	4 cut(s)	332, 338, 347, 358
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	1 cut(s)	206
MluCI	AATT	3 cut(s)	105, 285, 362
MnlI	CCTC	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	162
MslI	CAYNNNNRTG	2 cut(s)	186, 338
MspR9I	CCNGG	1 cut(s)	293
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	85, 239
NdeII	GATC	2 cut(s)	206, 352
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	2 cut(s)	186, 338
Sau3AI	GATC	2 cut(s)	206, 352
Sau96I	GGNCC	1 cut(s)	78
ScaI	AGTACT	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	293
SexAI	ACCWGGT	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	146
SmiMI	CAYNNNNRTG	2 cut(s)	186, 338
Sse9I	AATT	3 cut(s)	105, 285, 362
SspMI	CTAG	2 cut(s)	260, 309
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	2 cut(s)	100, 258
TasI	AATT	3 cut(s)	105, 285, 362
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	339
TspGWI	ACGGA	2 cut(s)	175, 199
XmiI	GTMKAC	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	2 cut(s)	260, 309
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.