Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Forward (+)

14853439 .. 14854843

Gene Structure 1405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G012620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAGGGGAAGAAGTGGATAACTTCCCCTTTGGAAATTGCTGAGGAGATTTCGAAGAGTTTGGCTTCGAAAGCTTTGATTGCTGAGGTCAGTGGGACTCTATGGGACATGGCAAGGCTTTTGGAGCGTGACTGTGAGCTTAAGATATTTACATTTGAAGACAACAGAGGCCGTGACACCTTCTGTTTGGGCTTGAATGATGAGCACTTAAAGAAAATTGAATCAGAGGCAGAGAAGGCTGTTAAATGCTTTGAGCGCATTGAAGTATCAATGGAACAGGCCCTCGAGATTTTCTCTGATAACAAATTCAAGGTAAATGAGTTTGACCTACATTACCCTTCAGAGGGTAAAGAAGGCAAGAGGGAGAGGCCTGTTATGATACACAGAGCTGTATTCGGCTCCTTTGAGCGTTTCTTTGGTATACTTTTGCATCCACGTCAGGCAATTGTTTGCCCCGTCTCAGAGAAATCCGAGGCTTATGCTCTACAGGTGACCTTACGGGCTAGAGATACAGAAGATGAAGATGTCACAGTAATGAGCATTGATGATCTTCTCCAATTCTTCAAAGACGAAGTTGAAGCTTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

196

Amino Acids

22.64

Weight (kDa)

4.92

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGS	PF02824	2 - 51	1.4e-10	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	2 cut(s)	343, 344
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	7 cut(s)	158, 196, 221, 263, 310, 565, 578
AjiI	CACGTC	1 cut(s)	437
AluBI	AGCT	4 cut(s)	74, 139, 389, 581
AluI	AGCT	4 cut(s)	74, 139, 389, 581
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	463
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	3 cut(s)	169, 279, 368
ApoI	RAATTY	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	502
AsuII	TTCGAA	2 cut(s)	53, 68
AvaI	CYCGRG	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	207
BbvCI	CCTCAGC	2 cut(s)	42, 84
BceAI	ACGGC	1 cut(s)	156
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	485
BfrI	CTTAAG	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	284
BmgBI	CACGTC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	400
BmsI	GCATC	1 cut(s)	439
BpiI	GAAGAC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
Bpu10I	CCTNAGC	2 cut(s)	42, 84
Bpu14I	TTCGAA	2 cut(s)	53, 68
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 344
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	2 cut(s)	343, 344
BseMII	CTCAG	3 cut(s)	33, 75, 474
BseRI	GAGGAG	1 cut(s)	59
BshFI	GGCC	3 cut(s)	171, 281, 370
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	109, 119
BslI	CCNNNNNNNGG	2 cut(s)	343, 344
BsmAI	GTCTC	1 cut(s)	463
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	2 cut(s)	109, 119
BsnI	GGCC	3 cut(s)	171, 281, 370
BsoBI	CYCGRG	1 cut(s)	284
Bsp119I	TTCGAA	2 cut(s)	53, 68
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	547
BspANI	GGCC	3 cut(s)	171, 281, 370
BspCNI	CTCAG	3 cut(s)	34, 76, 473
BspLI	GGNNCC	1 cut(s)	400
BspT104I	TTCGAA	2 cut(s)	53, 68
BspTI	CTTAAG	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	1 cut(s)	547
BssNAI	GTATAC	1 cut(s)	422
Bst1107I	GTATAC	1 cut(s)	422
Bst4CI	ACNGT	2 cut(s)	134, 532
Bst6I	CTCTTC	1 cut(s)	50
BstAFI	CTTAAG	1 cut(s)	140
BstBI	TTCGAA	2 cut(s)	53, 68
BstDEI	CTNAG	3 cut(s)	42, 84, 460
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	1 cut(s)	550
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	1 cut(s)	547
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 80, 124, 236, 255
BstPI	GGTNACC	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	485
BstV2I	GAAGAC	1 cut(s)	165
BstZ17I	GTATAC	1 cut(s)	422
BsuRI	GGCC	3 cut(s)	171, 281, 370
BtrI	CACGTC	1 cut(s)	437
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	97
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	280
CviAII	CATG	1 cut(s)	109
DdeI	CTNAG	3 cut(s)	42, 84, 460
DpnI	GATC	1 cut(s)	549
DpnII	GATC	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco147I	AGGCCT	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	284
Eco91I	GGTNACC	1 cut(s)	490
EcoO109I	RGGNCCY	1 cut(s)	280
EcoO65I	GGTNACC	1 cut(s)	490
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	1 cut(s)	112
FaiI	YATR	5 cut(s)	103, 110, 377, 422, 480
FaqI	GGGAC	2 cut(s)	109, 119
FatI	CATG	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	421
FokI	GGATG	1 cut(s)	417
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	171, 281, 370
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HindIII	AAGCTT	2 cut(s)	72, 579
HinfI	GANTC	2 cut(s)	97, 221
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	5 cut(s)	226, 298, 343, 463, 472
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	4 cut(s)	190, 229, 347, 348
HpyCH4III	ACNGT	2 cut(s)	134, 532
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 80, 124, 236, 255
HpyF3I	CTNAG	3 cut(s)	42, 84, 460
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	547
LmnI	GCTCC	2 cut(s)	124, 404
LpnPI	CCDG	4 cut(s)	263, 384, 425, 473
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	4 cut(s)	128, 173, 490, 526
MalI	GATC	1 cut(s)	549
MboI	GATC	1 cut(s)	547
MboII	GAAGA	7 cut(s)	22, 67, 170, 527, 533, 542, 553
MfeI	CAATTG	1 cut(s)	444
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	5 cut(s)	36, 216, 305, 444, 557
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	9 cut(s)	37, 79, 161, 220, 293, 337, 354, 360, 466
MseI	TTAA	3 cut(s)	141, 209, 243
MslI	CAYNNNNRTG	1 cut(s)	533
MspCI	CTTAAG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	444
MwoI	GCNNNNNNNGC	5 cut(s)	71, 80, 124, 236, 255
NdeII	GATC	1 cut(s)	547
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	4 cut(s)	128, 173, 490, 526
NspV	TTCGAA	2 cut(s)	53, 68
PaeR7I	CTCGAG	1 cut(s)	284
PceI	AGGCCT	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	221
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PspEI	GGTNACC	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	3 cut(s)	141, 209, 243
Sau3AI	GATC	1 cut(s)	547
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	1 cut(s)	485
Sfr274I	CTCGAG	1 cut(s)	284
SfuI	TTCGAA	2 cut(s)	53, 68
SlaI	CTCGAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	140, 284
SmoI	CTYRAG	2 cut(s)	140, 284
Sse9I	AATT	5 cut(s)	36, 216, 305, 444, 557
SseBI	AGGCCT	1 cut(s)	370
SspMI	CTAG	1 cut(s)	504
StuI	AGGCCT	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	134, 532
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	3 cut(s)	53, 68, 285
TasI	AATT	5 cut(s)	36, 216, 305, 444, 557
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	3 cut(s)	141, 209, 243
Tru9I	TTAA	3 cut(s)	141, 209, 243
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	4 cut(s)	128, 173, 490, 526
Tsp45I	GTSAC	4 cut(s)	128, 173, 490, 526
TspDTI	ATGAA	1 cut(s)	534
TspRI	CASTG	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	305
XhoI	CTCGAG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	421
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.