Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Reverse (-)

19379015 .. 19382751

Gene Structure 3737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30512

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGATACACAGAGCCATTTTGGGTTCTGTTAAGAGTATGTTTGCTATACTGCTGCATCACTACAATTGGAAATGGCTGCTCTGGCTTAGTCCACGTCAGGCAATTGTTTGCCCTGTCTTGGACAAATCCCAGCCCTATGCTCAACAGGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

51

Amino Acids

5.99

Weight (kDa)

9.86

Isoelectric Point (pI)

64.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	118
AjiI	CACGTC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	52, 76
BbvI	GCAGC	2 cut(s)	39, 63
BisI	GCNGC	2 cut(s)	53, 77
BlsI	GCNGC	2 cut(s)	54, 78
BmgBI	CACGTC	1 cut(s)	95
BmsI	GCATC	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	39, 63
BseYI	CCCAGC	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	86
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	39, 63
BtrI	CACGTC	1 cut(s)	95
CviJI	RGCY	4 cut(s)	14, 76, 85, 133
CviKI_1	RGCY	4 cut(s)	14, 76, 85, 133
DdeI	CTNAG	1 cut(s)	86
FaiI	YATR	3 cut(s)	38, 47, 138
Fnu4HI	GCNGC	2 cut(s)	53, 77
Fsp4HI	GCNGC	2 cut(s)	53, 77
GluI	GCNGC	2 cut(s)	53, 77
GsaI	CCCAGC	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	94
LpnPI	CCDG	5 cut(s)	67, 83, 126, 131, 143
Lsp1109I	GCAGC	2 cut(s)	39, 63
LweI	GCATC	1 cut(s)	64
MaeII	ACGT	1 cut(s)	94
MfeI	CAATTG	2 cut(s)	64, 102
MluCI	AATT	2 cut(s)	64, 102
MseI	TTAA	1 cut(s)	30
MunI	CAATTG	2 cut(s)	64, 102
MwoI	GCNNNNNNNGC	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	54, 78
PspFI	CCCAGC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	53, 77
SetI	ASST	2 cut(s)	97, 150
SfaNI	GCATC	1 cut(s)	64
SgeI	CNNG	6 cut(s)	94, 105, 110, 125, 130, 142
Sse9I	AATT	2 cut(s)	64, 102
TaiI	ACGT	1 cut(s)	97
TasI	AATT	2 cut(s)	64, 102
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	2 cut(s)	52, 76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.