Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Forward (+)

14460670 .. 14461796

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG141700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTCTCTGCGGCCGAGCACAAGAACCGAGGTCATGGAGGGGAAGAAGTGGATAACTTCCCCTTTGGAAATTGCTGAGGAGATTTCGAAGAGTTTAGCTTCGAAAGCTTTGATTGCTGAGGTCAGTGGGACTCTATGGGACATGGCAAGGCTTTTGGAGCGTGACTGTGAGCTTAAGATATTTACATTTGAAGACAGCAGAGGCCGTGACACCTTCTGGCACTTGAGGCCAAGTATGGATGCAAGCTCTGTATTGGTCCCTGCACAACAAAAGAAGAGGGGTTCTACTATGATGCATACTATGGCAGTTTGGGCTTCAATGATGAGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

110

Amino Acids

12.48

Weight (kDa)

7.92

Isoelectric Point (pI)

61.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGS	PF02824	10 - 62	1.1e-11	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	10
AcoI	YGGCCR	1 cut(s)	11
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	191, 318
AluBI	AGCT	4 cut(s)	98, 107, 172, 246
AluI	AGCT	4 cut(s)	98, 107, 172, 246
Alw21I	GWGCWC	2 cut(s)	20, 329
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	3 cut(s)	11, 202, 227
AspS9I	GGNCC	1 cut(s)	256
AsuII	TTCGAA	2 cut(s)	86, 101
AvaII	GGWCC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	20, 329
BbvCI	CCTCAGC	2 cut(s)	75, 117
BceAI	ACGGC	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	9
BfrI	CTTAAG	1 cut(s)	173
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	258
BmsI	GCATC	2 cut(s)	229, 282
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	2 cut(s)	75, 117
Bpu14I	TTCGAA	2 cut(s)	86, 101
BpuEI	CTTGAG	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	66, 108
BseRI	GAGGAG	1 cut(s)	92
BseX3I	CGGCCG	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	3 cut(s)	13, 204, 229
BsiEI	CGRYCG	1 cut(s)	14
BsiHKAI	GWGCWC	2 cut(s)	20, 329
BslFI	GGGAC	3 cut(s)	142, 152, 242
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	142, 152, 242
BsnI	GGCC	3 cut(s)	13, 204, 229
Bsp119I	TTCGAA	2 cut(s)	86, 101
Bsp1286I	GDGCHC	2 cut(s)	20, 329
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	3 cut(s)	13, 204, 229
BspCNI	CTCAG	2 cut(s)	67, 109
BspLI	GGNNCC	1 cut(s)	258
BspT104I	TTCGAA	2 cut(s)	86, 101
BspTI	CTTAAG	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	2 cut(s)	83, 269
BstAFI	CTTAAG	1 cut(s)	173
BstBI	TTCGAA	2 cut(s)	86, 101
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	2 cut(s)	75, 117
BstF5I	GGATG	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	9
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 113, 157, 226, 311
BstV2I	GAAGAC	1 cut(s)	198
BstZI	CGGCCG	1 cut(s)	11
BsuRI	GGCC	3 cut(s)	13, 204, 229
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	256
CviAII	CATG	2 cut(s)	34, 142
CviJI	RGCY	9 cut(s)	13, 98, 107, 151, 172, 204, 229, 246, 314
CviKI_1	RGCY	9 cut(s)	13, 98, 107, 151, 172, 204, 229, 246, 314
DdeI	CTNAG	2 cut(s)	75, 117
EaeI	YGGCCR	1 cut(s)	11
EagI	CGGCCG	1 cut(s)	11
Eam1104I	CTCTTC	2 cut(s)	83, 269
EarI	CTCTTC	2 cut(s)	83, 269
EclXI	CGGCCG	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	256
Eco52I	CGGCCG	1 cut(s)	11
EcoT22I	ATGCAT	1 cut(s)	297
FaeI	CATG	2 cut(s)	37, 145
FaiI	YATR	7 cut(s)	35, 136, 143, 236, 290, 297, 302
FaqI	GGGAC	3 cut(s)	142, 152, 242
FatI	CATG	2 cut(s)	33, 141
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	3 cut(s)	13, 204, 229
Hin1II	CATG	2 cut(s)	37, 145
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	242, 263, 295
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 113, 157, 226, 311
HpyF3I	CTNAG	2 cut(s)	75, 117
Hsp92II	CATG	2 cut(s)	37, 145
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	2 cut(s)	202, 273
LweI	GCATC	2 cut(s)	229, 282
MaeIII	GTNAC	2 cut(s)	161, 206
MboII	GAAGA	4 cut(s)	55, 100, 203, 286
MhlI	GDGCHC	2 cut(s)	20, 329
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	7 cut(s)	22, 31, 70, 112, 194, 219, 270
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	2 cut(s)	174, 331
MspCI	CTTAAG	1 cut(s)	173
MwoI	GCNNNNNNNGC	5 cut(s)	104, 113, 157, 226, 311
NlaIII	CATG	2 cut(s)	37, 145
NlaIV	GGNNCC	1 cut(s)	258
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	161, 206
NsiI	ATGCAT	1 cut(s)	297
NspV	TTCGAA	2 cut(s)	86, 101
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	174, 331
SatI	GCNGC	1 cut(s)	11
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	124
SduI	GDGCHC	2 cut(s)	20, 329
SetI	ASST	7 cut(s)	33, 100, 109, 123, 174, 215, 248
SfaNI	GCATC	2 cut(s)	229, 282
SfuI	TTCGAA	2 cut(s)	86, 101
SinI	GGWCC	1 cut(s)	256
SmlI	CTYRAG	2 cut(s)	173, 223
SmoI	CTYRAG	2 cut(s)	173, 223
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	86, 101
TasI	AATT	1 cut(s)	69
TauI	GCSGC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	174, 331
Tru9I	TTAA	2 cut(s)	174, 331
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	2 cut(s)	161, 206
Tsp45I	GTSAC	2 cut(s)	161, 206
TspRI	CASTG	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.