Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Forward (+)

14893048 .. 14894451

Gene Structure 1404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG142600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGGGGAAGAAGTGGATAACTTCCCTTTTGGAAATTGCTGAGGAGATTTCGAAGAGTTTGGCTTCGAAAGCTTTGATTGCTGAGGTCAGTGGGACTCTATGGGACATGGCAAGGCTTTTGGAGCGTGACTGTGAGCTTAAGATATTTACATTTGAAGACAACAGAGGCCGTGACACCTTCTGGTACTCTAGTGCTCATATTCTTGGACAATCTATCAATGGTCTGATATGGTTGCAGGCACTTGAGGCCAAGTATGGATGCAAGCTCTGTATTGGTCCCTGCACAACAAAAGAAGAGGGGTTCTACTATGATGCATACTATGGCAGTTTGGGCTTGAATGATGAGCACTTAAAGAAAATTGAATCAGAGGCAGAGAAGGCTGTTAAATGCTTTGAGCGCATTGAAGTATCAATGGAACAGGCCCTCGAGATTTTCTCTGATAACAAATTCAAGGTAAATGAGTTTGACCTACATTACCCTTCAGAGGGTAAAGAAGGCAAGAGGGAGAGGCCTGTTATGATACACAGAGCTGTATTCGGCTCCTTTGAGCGTTTCTTTGGTATACTTTTGGAGCACTACAAAGGAAAATGGCCCTTCTGGCTTAGTCCACGTCAGGCAATTGTTTGCCCCGTCTCAGAGAAATCCGAGGCTTATGCTCTACAGGTGACCTTACGGGCTAGAGATACAGAAGATGAAGATGTCACAGTAATGAGCATTGATGATCTTCTCCAATTCTTCAAAGACGAAGTTGAAGCTTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

255

Amino Acids

29.47

Weight (kDa)

5.04

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGS	PF02824	2 - 51	2.5e-09	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	487, 488
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	7 cut(s)	158, 340, 365, 407, 454, 742, 755
AjiI	CACGTC	1 cut(s)	614
AluBI	AGCT	5 cut(s)	74, 139, 268, 533, 758
AluI	AGCT	5 cut(s)	74, 139, 268, 533, 758
Alw21I	GWGCWC	3 cut(s)	199, 351, 579
Alw26I	GTCTC	1 cut(s)	640
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	5 cut(s)	169, 249, 423, 512, 593
ApoI	RAATTY	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	3 cut(s)	278, 424, 594
AsuHPI	GGTGA	1 cut(s)	679
AsuII	TTCGAA	2 cut(s)	53, 68
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	278
BaeI	ACNNNNGTAYC	2 cut(s)	178, 211
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	3 cut(s)	199, 351, 579
BbvCI	CCTCAGC	2 cut(s)	42, 84
BceAI	ACGGC	1 cut(s)	156
BcgI	CGANNNNNNTGC	2 cut(s)	638, 672
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	2 cut(s)	192, 681
BfmI	CTRYAG	1 cut(s)	662
BfrI	CTTAAG	1 cut(s)	140
BglI	GCCNNNNNGGC	1 cut(s)	601
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	614
BmgT120I	GGNCC	3 cut(s)	278, 424, 594
BmiI	GGNNCC	2 cut(s)	280, 544
BmsI	GCATC	2 cut(s)	251, 304
BpiI	GAAGAC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
Bpu10I	CCTNAGC	2 cut(s)	42, 84
Bpu14I	TTCGAA	2 cut(s)	53, 68
BpuEI	CTTGAG	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 488
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	2 cut(s)	487, 488
BseMII	CTCAG	3 cut(s)	33, 75, 651
BseRI	GAGGAG	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	268
BshFI	GGCC	5 cut(s)	171, 251, 425, 514, 595
BsiHKAI	GWGCWC	3 cut(s)	199, 351, 579
BsiHKCI	CYCGRG	1 cut(s)	428
BslFI	GGGAC	3 cut(s)	109, 119, 264
BslI	CCNNNNNNNGG	2 cut(s)	487, 488
BsmAI	GTCTC	1 cut(s)	640
BsmBI	CGTCTC	1 cut(s)	640
BsmFI	GGGAC	3 cut(s)	109, 119, 264
BsnI	GGCC	5 cut(s)	171, 251, 425, 514, 595
BsoBI	CYCGRG	1 cut(s)	428
Bsp119I	TTCGAA	2 cut(s)	53, 68
Bsp1286I	GDGCHC	3 cut(s)	199, 351, 579
Bsp143I	GATC	1 cut(s)	724
BspANI	GGCC	5 cut(s)	171, 251, 425, 514, 595
BspCNI	CTCAG	3 cut(s)	34, 76, 650
BspLI	GGNNCC	2 cut(s)	280, 544
BspT104I	TTCGAA	2 cut(s)	53, 68
BspTI	CTTAAG	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	1 cut(s)	724
BssNAI	GTATAC	1 cut(s)	566
Bst1107I	GTATAC	1 cut(s)	566
Bst4CI	ACNGT	2 cut(s)	134, 709
Bst6I	CTCTTC	2 cut(s)	50, 291
BstAFI	CTTAAG	1 cut(s)	140
BstBI	TTCGAA	2 cut(s)	53, 68
BstC8I	GCNNGC	2 cut(s)	240, 266
BstDEI	CTNAG	4 cut(s)	42, 84, 605, 637
BstEII	GGTNACC	1 cut(s)	667
BstF5I	GGATG	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	1 cut(s)	727
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	1 cut(s)	724
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 80, 124, 248, 333, 380, 399, 601
BstPI	GGTNACC	1 cut(s)	667
BstSFI	CTRYAG	1 cut(s)	662
BstV2I	GAAGAC	1 cut(s)	165
BstZ17I	GTATAC	1 cut(s)	566
BsuRI	GGCC	5 cut(s)	171, 251, 425, 514, 595
BtrI	CACGTC	1 cut(s)	614
BtsCI	GGATG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	240, 266
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	3 cut(s)	278, 424, 594
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	1 cut(s)	109
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	4 cut(s)	42, 84, 605, 637
DpnI	GATC	1 cut(s)	726
DpnII	GATC	1 cut(s)	724
Eam1104I	CTCTTC	2 cut(s)	50, 291
EarI	CTCTTC	2 cut(s)	50, 291
Eco147I	AGGCCT	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	428
Eco91I	GGTNACC	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	667
EcoT22I	ATGCAT	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	640
FaeI	CATG	1 cut(s)	112
FaqI	GGGAC	3 cut(s)	109, 119, 264
FatI	CATG	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	565
FokI	GGATG	1 cut(s)	273
FspBI	CTAG	2 cut(s)	192, 681
GlaI	GCGC	1 cut(s)	401
HaeIII	GGCC	5 cut(s)	171, 251, 425, 514, 595
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HindIII	AAGCTT	2 cut(s)	72, 756
HinfI	GANTC	2 cut(s)	97, 365
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	2 cut(s)	566, 611
Hpy188I	TCNGA	6 cut(s)	228, 370, 442, 487, 640, 649
Hpy188III	TCNNGA	1 cut(s)	430
Hpy8I	GTNNAC	2 cut(s)	566, 611
HpyAV	CCTTC	5 cut(s)	190, 373, 491, 492, 607
HpyCH4III	ACNGT	2 cut(s)	134, 709
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	4 cut(s)	238, 264, 285, 317
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 80, 124, 248, 333, 380, 399, 601
HpyF3I	CTNAG	4 cut(s)	42, 84, 605, 637
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	724
LmnI	GCTCC	3 cut(s)	124, 548, 574
LpnPI	CCDG	8 cut(s)	169, 224, 295, 407, 528, 586, 602, 650
LweI	GCATC	2 cut(s)	251, 304
MaeI	CTAG	2 cut(s)	192, 681
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	4 cut(s)	128, 173, 667, 703
MalI	GATC	1 cut(s)	726
MboI	GATC	1 cut(s)	724
MboII	GAAGA	8 cut(s)	22, 67, 170, 308, 704, 710, 719, 730
MfeI	CAATTG	1 cut(s)	621
MhlI	GDGCHC	3 cut(s)	199, 351, 579
MluCI	AATT	5 cut(s)	36, 360, 449, 621, 734
MlyI	GAGTC	1 cut(s)	91
Mph1103I	ATGCAT	1 cut(s)	319
MseI	TTAA	3 cut(s)	141, 353, 387
MslI	CAYNNNNRTG	1 cut(s)	710
MspCI	CTTAAG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	621
MwoI	GCNNNNNNNGC	8 cut(s)	71, 80, 124, 248, 333, 380, 399, 601
NdeII	GATC	1 cut(s)	724
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	2 cut(s)	280, 544
NmuCI	GTSAC	4 cut(s)	128, 173, 667, 703
NsiI	ATGCAT	1 cut(s)	319
NspV	TTCGAA	2 cut(s)	53, 68
PaeR7I	CTCGAG	1 cut(s)	428
PceI	AGGCCT	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	365
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PspEI	GGTNACC	1 cut(s)	667
PspN4I	GGNNCC	2 cut(s)	280, 544
PspPI	GGNCC	3 cut(s)	278, 424, 594
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	710
SaqAI	TTAA	3 cut(s)	141, 353, 387
Sau3AI	GATC	1 cut(s)	724
Sau96I	GGNCC	3 cut(s)	278, 424, 594
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	3 cut(s)	199, 351, 579
SfaNI	GCATC	2 cut(s)	251, 304
SfcI	CTRYAG	1 cut(s)	662
Sfr274I	CTCGAG	1 cut(s)	428
SfuI	TTCGAA	2 cut(s)	53, 68
SinI	GGWCC	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	3 cut(s)	140, 245, 428
SmoI	CTYRAG	3 cut(s)	140, 245, 428
Sse9I	AATT	5 cut(s)	36, 360, 449, 621, 734
SseBI	AGGCCT	1 cut(s)	514
SspMI	CTAG	2 cut(s)	192, 681
StuI	AGGCCT	1 cut(s)	514
TaaI	ACNGT	2 cut(s)	134, 709
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	3 cut(s)	53, 68, 429
TasI	AATT	5 cut(s)	36, 360, 449, 621, 734
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	3 cut(s)	141, 353, 387
Tru9I	TTAA	3 cut(s)	141, 353, 387
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	4 cut(s)	128, 173, 667, 703
Tsp45I	GTSAC	4 cut(s)	128, 173, 667, 703
TspDTI	ATGAA	1 cut(s)	711
TspRI	CASTG	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	449
XhoI	CTCGAG	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	565
XspI	CTAG	2 cut(s)	192, 681
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.