Rh5CG153100

threonine-tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
14191302 .. 14193124
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG153100.1

Sequence Viewer

Length: 1020 bp
ATGGAGGGGAAGAAGTGGATAACTTCCCCTTTGGAAATTGCTGAGGAGATTTCGAAGAGTTTGGCTTCGAAAGCTTTGATTGCTGAGGTCAGTGGGACTCTATGGGACATGGCAAGGCCTTTGGAGCGTGACTGTGAGCTTAAGATATTTACATTTGAAGACAACAAAGGCCGTGACACCTTCTGGTACTCTAGTGCTCATATTCTTGGACAGGCACTTGAGGCCAAGTATGGATGCAAGCTCTGTATTGGTCCCTGCACAACAAAAGAAGAGGGTTTCTACTATGATGCATACTATGGCAGTTTGGGCTTGAATGATGAGCACTTAAAGAAAATTGAATCAGAGGCAGAGAAGGCTGTTAAGGCCAAACAGTGCTTTGAGCGCATTGAAGTATCAATGGAACAGGCCCTCGAGATTTTCTCTGATAACAAATTCAAGATTGAGATCATCAATGAGCTTCCTGTAGATAAGGCTATATGTTTGAAGGCTTCTTCAGCCTACTGGAGGGGAAATAAAGATCGCGAAAGTCTGCAGCGAGTTTATGGAATATCATATCCGGATAAAAAACTTTTGCAGGCATATATCAAGCAGCAGGAAGAAGCAAAAAAATATGACCATAGGTTGTTGGGTAAATCACAGGAGCTCATATTTTGTCACCCATATAGCCCGGGAAGTTGGTTCTTCACCCCCAACGGAGCTCGGATTTATAAGAAATTAATGCAGTTCATGGAAAATGAATATTTGGAAAGAGGATATCAGGAGGTTATAACACCAAACATATTCAAAATGGATTTGTTCGAAAAATCTAAGCATGCAGGACACTACAAACAGAATATGTTTCTTTTAGAGATTGAGAAAGAAGAATATGGTTTGAAGCCAATGAACTGTCCTGGTCACTGTGAAGAGTTTCGACATAGGCCTCGTTCTTATAGAGAACTTCCTCTTCGGATGGCTGAATTTGGGGTGCTGCATCGAAATGAGGTCAGTGGTGCACTAGATGGATTGACTCGTGCAGGATGA

Protein Analysis

339

Amino Acids

39.35

Weight (kDa)

6.54

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TGS PF02824 2 - 51 3.2e-11 TGS domain
tRNA-synt_2b PF00587 281 - 337 2.7e-13 tRNA synthetase class II core domain (G, H, P, S and T)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 708, 767
AccII CGCG 1 cut(s) 522
AccIII TCCGGA 1 cut(s) 556
AcsI RAATTY 2 cut(s) 431, 956
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 504
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 8 cut(s) 158, 313, 338, 389, 436, 484, 784, 874
AjnI CCWGG 1 cut(s) 889
AluBI AGCT 6 cut(s) 74, 139, 241, 457, 643, 698
AluI AGCT 6 cut(s) 74, 139, 241, 457, 643, 698
Alw21I GWGCWC 5 cut(s) 199, 324, 645, 700, 994
Alw44I GTGCAC 1 cut(s) 990
Ama87I CYCGRG 2 cut(s) 410, 667
Aor13HI TCCGGA 1 cut(s) 556
AoxI GGCC 6 cut(s) 116, 169, 222, 363, 405, 917
ApaLI GTGCAC 1 cut(s) 990
ApeKI GCWGC 3 cut(s) 532, 589, 967
ApoI RAATTY 2 cut(s) 431, 956
AseI ATTAAT 1 cut(s) 716
Asp700I GAANNNNTTC 1 cut(s) 906
AspLEI GCGC 1 cut(s) 384
AspS9I GGNCC 2 cut(s) 251, 406
AsuC2I CCSGG 2 cut(s) 668, 669
AsuHPI GGTGA 2 cut(s) 647, 676
AsuII TTCGAA 3 cut(s) 53, 68, 798
AvaI CYCGRG 2 cut(s) 410, 667
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 994
BaeI ACNNNNGTAYC 2 cut(s) 178, 211
BanII GRGCYC 2 cut(s) 645, 700
BauI CACGAG 1 cut(s) 1008
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 5 cut(s) 199, 324, 645, 700, 994
BbvCI CCTCAGC 2 cut(s) 42, 84
BbvI GCAGC 3 cut(s) 544, 601, 954
BccI CCATC 2 cut(s) 943, 992
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 891
BcnI CCSGG 2 cut(s) 668, 669
BfaI CTAG 2 cut(s) 192, 995
BfmI CTRYAG 2 cut(s) 462, 530
BfrI CTTAAG 1 cut(s) 140
BisI GCNGC 3 cut(s) 533, 590, 968
BlsI GCNGC 3 cut(s) 534, 591, 969
Bme1390I CCNGG 3 cut(s) 668, 669, 891
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 2 cut(s) 410, 667
BmgT120I GGNCC 2 cut(s) 251, 406
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 3 cut(s) 668, 669, 891
BmsI GCATC 3 cut(s) 224, 277, 979
BpiI GAAGAC 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BpmI CTGGAG 1 cut(s) 523
Bpu10I CCTNAGC 2 cut(s) 42, 84
Bpu14I TTCGAA 3 cut(s) 53, 68, 798
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 2 cut(s) 668, 669
BsaBI GATNNNNATC 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 667
BsaWI WCCGGW 1 cut(s) 556
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse1I ACTGG 1 cut(s) 506
Bse8I GATNNNNATC 1 cut(s) 443
BseAI TCCGGA 1 cut(s) 556
BseBI CCWGG 1 cut(s) 891
BseDI CCNNGG 1 cut(s) 667
BseGI GGATG 2 cut(s) 239, 954
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 1 cut(s) 504
BseMII CTCAG 2 cut(s) 33, 75
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 1 cut(s) 59
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 3 cut(s) 544, 601, 954
BsgI GTGCAG 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 522
BshFI GGCC 6 cut(s) 118, 171, 224, 365, 407, 919
BsiHKAI GWGCWC 5 cut(s) 199, 324, 645, 700, 994
BsiHKCI CYCGRG 2 cut(s) 410, 667
BsiSI CCGG 2 cut(s) 557, 668
BslFI GGGAC 3 cut(s) 109, 119, 237
BslI CCNNNNNNNGG 1 cut(s) 504
BsmFI GGGAC 3 cut(s) 109, 119, 237
BsnI GGCC 6 cut(s) 118, 171, 224, 365, 407, 919
BsoBI CYCGRG 2 cut(s) 410, 667
Bsp119I TTCGAA 3 cut(s) 53, 68, 798
Bsp1286I GDGCHC 5 cut(s) 199, 324, 645, 700, 994
Bsp13I TCCGGA 1 cut(s) 556
Bsp143I GATC 2 cut(s) 444, 517
Bsp68I TCGCGA 1 cut(s) 522
BspANI GGCC 6 cut(s) 118, 171, 224, 365, 407, 919
BspCNI CTCAG 2 cut(s) 34, 76
BspEI TCCGGA 1 cut(s) 556
BspFNI CGCG 1 cut(s) 522
BspLI GGNNCC 1 cut(s) 253
BspMAI CTGCAG 1 cut(s) 534
BspT104I TTCGAA 3 cut(s) 53, 68, 798
BspTI CTTAAG 1 cut(s) 140
BsrI ACTGG 1 cut(s) 506
BssECI CCNNGG 1 cut(s) 667
BssMI GATC 2 cut(s) 444, 517
BssSI CACGAG 1 cut(s) 1008
Bst2BI CACGAG 1 cut(s) 1008
Bst2UI CCWGG 1 cut(s) 891
Bst4CI ACNGT 4 cut(s) 134, 372, 887, 899
Bst6I CTCTTC 4 cut(s) 50, 264, 897, 948
BstAFI CTTAAG 1 cut(s) 140
BstBI TTCGAA 3 cut(s) 53, 68, 798
BstC8I GCNNGC 3 cut(s) 239, 576, 813
BstDEI CTNAG 3 cut(s) 42, 84, 807
BstENI CCTNNNNNAGG 1 cut(s) 502
BstF5I GGATG 2 cut(s) 239, 954
BstFNI CGCG 1 cut(s) 522
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 2 cut(s) 447, 520
BstMBI GATC 2 cut(s) 444, 517
BstMWI GCNNNNNNNGC 9 cut(s) 71, 80, 124, 221, 306, 353, 362, 381, 494
BstNI CCWGG 1 cut(s) 891
BstNSI RCATGY 1 cut(s) 815
BstSCI CCNGG 3 cut(s) 666, 667, 889
BstSFI CTRYAG 2 cut(s) 462, 530
BstSLI GKGCMC 1 cut(s) 994
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 3 cut(s) 544, 601, 954
BstV2I GAAGAC 1 cut(s) 165
BsuRI GGCC 6 cut(s) 118, 171, 224, 365, 407, 919
BtsCI GGATG 2 cut(s) 239, 954
BtsIMutI CAGTG 4 cut(s) 97, 377, 895, 991
BtuMI TCGCGA 1 cut(s) 522
Cac8I GCNNGC 3 cut(s) 239, 576, 813
CfoI GCGC 1 cut(s) 384
Cfr13I GGNCC 2 cut(s) 251, 406
Cfr9I CCCGGG 1 cut(s) 667
Csp6I GTAC 1 cut(s) 187
CviAII CATG 3 cut(s) 109, 727, 812
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 3 cut(s) 42, 84, 807
DpnI GATC 2 cut(s) 446, 519
DpnII GATC 2 cut(s) 444, 517
Eam1104I CTCTTC 4 cut(s) 50, 264, 897, 948
EarI CTCTTC 4 cut(s) 50, 264, 897, 948
Ecl136II GAGCTC 2 cut(s) 643, 698
Eco147I AGGCCT 2 cut(s) 118, 919
Eco24I GRGCYC 2 cut(s) 645, 700
Eco32I GATATC 1 cut(s) 755
Eco47I GGWCC 1 cut(s) 251
Eco53kI GAGCTC 2 cut(s) 643, 698
Eco57I CTGAAG 1 cut(s) 477
Eco88I CYCGRG 2 cut(s) 410, 667
EcoICRI GAGCTC 2 cut(s) 643, 698
EcoNI CCTNNNNNAGG 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 889
EcoRV GATATC 1 cut(s) 755
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 2 cut(s) 645, 700
FaeI CATG 3 cut(s) 112, 730, 815
FaqI GGGAC 3 cut(s) 109, 119, 237
FatI CATG 3 cut(s) 108, 726, 811
Fnu4HI GCNGC 3 cut(s) 533, 590, 968
FokI GGATG 2 cut(s) 246, 961
FriOI GRGCYC 2 cut(s) 645, 700
Fsp4HI GCNGC 3 cut(s) 533, 590, 968
FspBI CTAG 2 cut(s) 192, 995
GlaI GCGC 1 cut(s) 383
GluI GCNGC 3 cut(s) 533, 590, 968
GsuI CTGGAG 1 cut(s) 523
HaeIII GGCC 6 cut(s) 118, 171, 224, 365, 407, 919
HapII CCGG 2 cut(s) 557, 668
HhaI GCGC 1 cut(s) 384
Hin1II CATG 3 cut(s) 112, 730, 815
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 3 cut(s) 97, 338, 1006
HpaII CCGG 2 cut(s) 557, 668
HphI GGTGA 2 cut(s) 647, 676
Hpy166II GTNNAC 1 cut(s) 992
Hpy188I TCNGA 4 cut(s) 343, 424, 702, 948
Hpy188III TCNNGA 5 cut(s) 412, 436, 521, 557, 758
Hpy8I GTNNAC 1 cut(s) 992
HpyAV CCTTC 3 cut(s) 190, 346, 478
HpyCH4III ACNGT 4 cut(s) 134, 372, 887, 899
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 80, 124, 221, 306, 353, 362, 381, 494
HpyF3I CTNAG 3 cut(s) 42, 84, 807
Hsp92II CATG 3 cut(s) 112, 730, 815
HspAI GCGC 1 cut(s) 382
Kpn2I TCCGGA 1 cut(s) 556
Kzo9I GATC 2 cut(s) 444, 517
LmnI GCTCC 3 cut(s) 124, 640, 695
Lsp1109I GCAGC 3 cut(s) 544, 601, 954
LweI GCATC 3 cut(s) 224, 277, 979
MaeI CTAG 2 cut(s) 192, 995
MaeIII GTNAC 4 cut(s) 128, 173, 653, 893
MalI GATC 2 cut(s) 446, 519
MboI GATC 2 cut(s) 444, 517
MhlI GDGCHC 5 cut(s) 199, 324, 645, 700, 994
MluCI AATT 5 cut(s) 36, 333, 431, 713, 956
MlyI GAGTC 2 cut(s) 91, 1000
Mph1103I ATGCAT 1 cut(s) 292
MroI TCCGGA 1 cut(s) 556
MroXI GAANNNNTTC 1 cut(s) 906
MseI TTAA 4 cut(s) 141, 326, 360, 716
MslI CAYNNNNRTG 1 cut(s) 975
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 2 cut(s) 557, 668
MspR9I CCNGG 3 cut(s) 668, 669, 891
MvaI CCWGG 1 cut(s) 891
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 9 cut(s) 71, 80, 124, 221, 306, 353, 362, 381, 494
NciI CCSGG 2 cut(s) 668, 669
NdeII GATC 2 cut(s) 444, 517
NlaIII CATG 3 cut(s) 112, 730, 815
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 4 cut(s) 128, 173, 653, 893
NruI TCGCGA 1 cut(s) 522
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 1 cut(s) 815
NspV TTCGAA 3 cut(s) 53, 68, 798
PaeI GCATGC 1 cut(s) 815
PaeR7I CTCGAG 1 cut(s) 410
PceI AGGCCT 2 cut(s) 118, 919
PdmI GAANNNNTTC 1 cut(s) 906
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 3 cut(s) 534, 591, 969
PleI GAGTC 2 cut(s) 91, 1000
PpsI GAGTC 2 cut(s) 91, 1000
PshBI ATTAAT 1 cut(s) 716
PsiI TTATAA 2 cut(s) 708, 767
Psp124BI GAGCTC 2 cut(s) 645, 700
Psp6I CCWGG 1 cut(s) 889
PspGI CCWGG 1 cut(s) 889
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 2 cut(s) 251, 406
PstI CTGCAG 1 cut(s) 534
RruI TCGCGA 1 cut(s) 522
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 975
SacI GAGCTC 2 cut(s) 645, 700
SaqAI TTAA 4 cut(s) 141, 326, 360, 716
SatI GCNGC 3 cut(s) 533, 590, 968
Sau3AI GATC 2 cut(s) 444, 517
Sau96I GGNCC 2 cut(s) 251, 406
SchI GAGTC 2 cut(s) 91, 1000
ScrFI CCNGG 3 cut(s) 668, 669, 891
SduI GDGCHC 5 cut(s) 199, 324, 645, 700, 994
SfaNI GCATC 3 cut(s) 224, 277, 979
SfcI CTRYAG 2 cut(s) 462, 530
Sfr274I CTCGAG 1 cut(s) 410
SfuI TTCGAA 3 cut(s) 53, 68, 798
SinI GGWCC 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 410
SmaI CCCGGG 1 cut(s) 669
SmiMI CAYNNNNRTG 1 cut(s) 975
SmlI CTYRAG 3 cut(s) 140, 218, 410
SmoI CTYRAG 3 cut(s) 140, 218, 410
SphI GCATGC 1 cut(s) 815
Sse9I AATT 5 cut(s) 36, 333, 431, 713, 956
SseBI AGGCCT 2 cut(s) 118, 919
SspI AATATT 1 cut(s) 740
SspMI CTAG 2 cut(s) 192, 995
SstI GAGCTC 2 cut(s) 645, 700
StuI AGGCCT 2 cut(s) 118, 919
StyD4I CCNGG 3 cut(s) 666, 667, 889
TaaI ACNGT 4 cut(s) 134, 372, 887, 899
TaqI TCGA 6 cut(s) 53, 68, 411, 798, 910, 973
TasI AATT 5 cut(s) 36, 333, 431, 713, 956
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 4 cut(s) 141, 326, 360, 716
Tru9I TTAA 4 cut(s) 141, 326, 360, 716
TscAI CASTG 4 cut(s) 97, 377, 902, 991
TseFI GTSAC 4 cut(s) 128, 173, 653, 893
TseI GCWGC 3 cut(s) 532, 589, 967
Tsp45I GTSAC 4 cut(s) 128, 173, 653, 893
TspDTI ATGAA 3 cut(s) 715, 750, 896
TspGWI ACGGA 1 cut(s) 708
TspMI CCCGGG 1 cut(s) 667
TspRI CASTG 4 cut(s) 97, 377, 902, 991
Vha464I CTTAAG 1 cut(s) 140
VneI GTGCAC 1 cut(s) 990
VpaK11BI GGWCC 1 cut(s) 251
VspI ATTAAT 1 cut(s) 716
XagI CCTNNNNNAGG 1 cut(s) 502
XapI RAATTY 2 cut(s) 431, 956
XceI RCATGY 1 cut(s) 815
XhoI CTCGAG 1 cut(s) 410
XmaI CCCGGG 1 cut(s) 667
XmnI GAANNNNTTC 1 cut(s) 906
XspI CTAG 2 cut(s) 192, 995
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.