Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002759.1

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Forward (+)

273147 .. 275396

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002759.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgcagactccaccttgctggcctccggtgaccagtggtagtgcgccggccaccggtgacctgaatccggtgaacggtgaccggaatccggtgactgtgaccggaatccgacgaccggttcaggaacggattcgtcgcgctggttatcatgttgatgttgacacaagtgatagatccgtgagtaaaaaggtgcgagaagctcaggtggcacaatacaactacgttctggttgttggtgagaaggaagccaaaattgatcaggtgaccttacgggctagagatacagaagatgaagatgtcacagtaatgagcattgatgatcttctccaattcttcaaagacgaagttgaagctttccattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

120

Amino Acids

13.44

Weight (kDa)

4.97

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	138
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	48
AfiI	CCNNNNNNNGG	5 cut(s)	53, 67, 74, 88, 115
AgeI	ACCGGT	2 cut(s)	53, 115
AgsI	TTSAA	2 cut(s)	337, 350
AluBI	AGCT	2 cut(s)	200, 353
AluI	AGCT	2 cut(s)	200, 353
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	2 cut(s)	20, 48
AsiGI	ACCGGT	2 cut(s)	53, 115
Asp700I	GAANNNNTTC	1 cut(s)	129
AspLEI	GCGC	2 cut(s)	46, 140
AsuHPI	GGTGA	7 cut(s)	40, 68, 82, 89, 103, 248, 274
BclI	TGATCA	1 cut(s)	256
BfaI	CTAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	201
BsaWI	WCCGGW	7 cut(s)	25, 53, 67, 81, 88, 101, 115
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 67, 74, 88, 115
Bse118I	RCCGGY	3 cut(s)	46, 53, 115
Bse1I	ACTGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	5 cut(s)	53, 67, 74, 88, 115
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	22, 50
BshTI	ACCGGT	2 cut(s)	53, 115
BsiEI	CGRYCG	1 cut(s)	116
BsiSI	CCGG	8 cut(s)	26, 47, 54, 68, 82, 89, 102, 116
BslI	CCNNNNNNNGG	5 cut(s)	53, 67, 74, 88, 115
BsnI	GGCC	2 cut(s)	22, 50
Bsp143I	GATC	3 cut(s)	173, 256, 319
BspANI	GGCC	2 cut(s)	22, 50
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	168
BsrFI	RCCGGY	3 cut(s)	46, 53, 115
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	3 cut(s)	46, 53, 115
BssMI	GATC	3 cut(s)	173, 256, 319
Bst4CI	ACNGT	3 cut(s)	77, 97, 304
BstC8I	GCNNGC	2 cut(s)	20, 48
BstDEI	CTNAG	1 cut(s)	201
BstEII	GGTNACC	4 cut(s)	28, 56, 77, 262
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	46, 140
BstKTI	GATC	3 cut(s)	176, 259, 322
BstMBI	GATC	3 cut(s)	173, 256, 319
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstPI	GGTNACC	4 cut(s)	28, 56, 77, 262
BstUI	CGCG	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	22, 50
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	20, 48
CfoI	GCGC	2 cut(s)	46, 140
Cfr10I	RCCGGY	3 cut(s)	46, 53, 115
CspAI	ACCGGT	2 cut(s)	53, 115
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	6 cut(s)	22, 50, 200, 248, 275, 353
CviKI_1	RGCY	6 cut(s)	22, 50, 200, 248, 275, 353
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	3 cut(s)	175, 258, 321
DpnII	GATC	3 cut(s)	173, 256, 319
EaeI	YGGCCR	1 cut(s)	48
Eco91I	GGTNACC	4 cut(s)	28, 56, 77, 262
EcoO65I	GGTNACC	4 cut(s)	28, 56, 77, 262
FaeI	CATG	1 cut(s)	152
FaiI	YATR	1 cut(s)	150
FatI	CATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	256
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	2 cut(s)	45, 139
HaeIII	GGCC	2 cut(s)	22, 50
HapII	CCGG	8 cut(s)	26, 47, 54, 68, 82, 89, 102, 116
HhaI	GCGC	2 cut(s)	46, 140
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	2 cut(s)	44, 138
HinP1I	GCGC	2 cut(s)	44, 138
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	5 cut(s)	7, 64, 85, 105, 130
HpaII	CCGG	8 cut(s)	26, 47, 54, 68, 82, 89, 102, 116
HphI	GGTGA	7 cut(s)	40, 68, 82, 89, 103, 248, 274
Hpy166II	GTNNAC	2 cut(s)	73, 160
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	73, 160
Hpy99I	CGWCG	2 cut(s)	114, 138
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	3 cut(s)	77, 97, 304
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	2 cut(s)	44, 138
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	173, 256, 319
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	7 cut(s)	28, 56, 77, 91, 97, 262, 298
MalI	GATC	3 cut(s)	175, 258, 321
MboI	GATC	3 cut(s)	173, 256, 319
MboII	GAAGA	4 cut(s)	299, 305, 314, 325
MflI	RGATCY	1 cut(s)	173
MluCI	AATT	2 cut(s)	252, 329
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	1 cut(s)	33
MroNI	GCCGGC	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	129
MslI	CAYNNNNRTG	2 cut(s)	153, 305
MspI	CCGG	8 cut(s)	26, 47, 54, 68, 82, 89, 102, 116
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	206
NaeI	GCCGGC	1 cut(s)	48
NdeII	GATC	3 cut(s)	173, 256, 319
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	152
NmuCI	GTSAC	7 cut(s)	28, 56, 77, 91, 97, 262, 298
PdiI	GCCGGC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	4 cut(s)	64, 85, 105, 130
PinAI	ACCGGT	2 cut(s)	53, 115
PspEI	GGTNACC	4 cut(s)	28, 56, 77, 262
PsuI	RGATCY	1 cut(s)	173
RseI	CAYNNNNRTG	2 cut(s)	153, 305
Sau3AI	GATC	3 cut(s)	173, 256, 319
SetI	ASST	9 cut(s)	16, 63, 192, 202, 207, 225, 264, 269, 355
SgrAI	CRCCGGYG	1 cut(s)	53
SmiMI	CAYNNNNRTG	2 cut(s)	153, 305
Sse9I	AATT	2 cut(s)	252, 329
SspMI	CTAG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	77, 97, 304
TaiI	ACGT	1 cut(s)	225
TasI	AATT	2 cut(s)	252, 329
TfiI	GAWTC	4 cut(s)	64, 85, 105, 130
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	7 cut(s)	28, 56, 77, 91, 97, 262, 298
Tsp45I	GTSAC	7 cut(s)	28, 56, 77, 91, 97, 262, 298
TspDTI	ATGAA	1 cut(s)	306
TspGWI	ACGGA	2 cut(s)	142, 166
TspRI	CASTG	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.