Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Forward (+)

33187085 .. 33190193

Gene Structure 3109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATCACTGAGACCATCATTGATCATGCAACCCATAATTCGATCGTCGATGATGTTCTGAAGGTGAAAGTGCAATTGGCAAGCTCAGTGGAGAAGGATGAGGTTTCATCCTTAGAGCTGGCATTGGATTGCTTCTCACTCTTGCTGGCTATCTCAAGGCCAGAAAAATACCTTGGAGAGATAGAAACATGGGAGAAAGCTGAGGCAGCTCTTACAGAAGCATTGAATGAGTTTGGCAAACCCTGGCAGATACATGAAGGGGATGGTGCAACATTACAGCTTTATTTTCAGCTACCTGCTCGCTTTGAGTTGTATTACTCAACAGAGGGTGAAGAAGGCAAGAAGGAGGCACCTGTTATGATACACAGAGCCATTTTGGGTTCTGTTGAGCGTATGTTTGCTATACCGCTGGAGCACTACAAGGGGAAATGGCCACTCTGGCTTAGTCCACGTCAGGCAATTGTTTGCCCTGTCTCGGACAAATCCCAGCCTTATGCTCAACAGGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

171

Amino Acids

19.2

Weight (kDa)

4.95

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	78 - 140	2.7e-06	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	349
AciI	CCGC	1 cut(s)	407
AcoI	YGGCCR	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	1 cut(s)	226
AjiI	CACGTC	1 cut(s)	452
AjnI	CCWGG	1 cut(s)	242
AjuI	GAANNNNNNNTTGG	4 cut(s)	59, 91, 156, 188
AluBI	AGCT	6 cut(s)	84, 118, 200, 209, 280, 292
AluI	AGCT	6 cut(s)	84, 118, 200, 209, 280, 292
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	5, 478
AoxI	GGCC	2 cut(s)	158, 431
ApeKI	GCWGC	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	76, 341
BalI	TGGCCA	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	218
BccI	CCATC	2 cut(s)	23, 257
BciT130I	CCWGG	1 cut(s)	244
BclI	TGATCA	2 cut(s)	3, 22
BcoDI	GTCTC	2 cut(s)	5, 478
BfuAI	ACCTGC	1 cut(s)	304
BglI	GCCNNNNNGGC	1 cut(s)	439
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	431
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	172, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	2 cut(s)	172, 242
BseGI	GGATG	3 cut(s)	103, 107, 268
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMII	CTCAG	2 cut(s)	99, 192
BseXI	GCAGC	1 cut(s)	218
BseYI	CCCAGC	1 cut(s)	486
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	160, 433
BshNI	GGYRCC	1 cut(s)	349
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	2 cut(s)	5, 478
BsnI	GGCC	2 cut(s)	160, 433
Bso31I	GGTCTC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	3 cut(s)	3, 22, 42
BspACI	CCGC	1 cut(s)	407
BspANI	GGCC	2 cut(s)	160, 433
BspCNI	CTCAG	2 cut(s)	98, 193
BspLI	GGNNCC	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	304
BspT107I	GGYRCC	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	172, 242
BssMI	GATC	3 cut(s)	3, 22, 42
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	244
BstC8I	GCNNGC	4 cut(s)	82, 120, 147, 301
BstDEI	CTNAG	5 cut(s)	9, 85, 112, 201, 443
BstF5I	GGATG	3 cut(s)	103, 107, 268
BstKTI	GATC	3 cut(s)	6, 25, 45
BstMAI	GTCTC	2 cut(s)	5, 478
BstMBI	GATC	3 cut(s)	3, 22, 42
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 439
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	160, 433
BtrI	CACGTC	1 cut(s)	452
BtsCI	GGATG	3 cut(s)	103, 107, 268
BtsIMutI	CAGTG	2 cut(s)	6, 93
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	4 cut(s)	82, 120, 147, 301
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	3 cut(s)	26, 189, 254
DdeI	CTNAG	5 cut(s)	9, 85, 112, 201, 443
DpnI	GATC	3 cut(s)	5, 24, 44
DpnII	GATC	3 cut(s)	3, 22, 42
EaeI	YGGCCR	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	172
Eco31I	GGTCTC	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	3 cut(s)	29, 192, 257
FaiI	YATR	8 cut(s)	27, 36, 190, 255, 359, 395, 404, 495
FatI	CATG	3 cut(s)	25, 188, 253
FbaI	TGATCA	2 cut(s)	3, 22
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	3 cut(s)	94, 110, 275
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
GsaI	CCCAGC	1 cut(s)	490
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	160, 433
Hin1II	CATG	3 cut(s)	29, 192, 257
HphI	GGTGA	2 cut(s)	76, 341
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	2 cut(s)	60, 478
Hpy8I	GTNNAC	1 cut(s)	449
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	5 cut(s)	55, 88, 251, 329, 337
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	3 cut(s)	29, 73, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 439
HpyF3I	CTNAG	5 cut(s)	9, 85, 112, 201, 443
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	3 cut(s)	29, 192, 257
Ksp22I	TGATCA	2 cut(s)	3, 22
Kzo9I	GATC	3 cut(s)	3, 22, 42
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	1 cut(s)	218
MaeII	ACGT	1 cut(s)	451
MalI	GATC	3 cut(s)	5, 24, 44
MboI	GATC	3 cut(s)	3, 22, 42
MboII	GAAGA	1 cut(s)	344
MfeI	CAATTG	2 cut(s)	74, 459
MhlI	GDGCHC	1 cut(s)	417
MlsI	TGGCCA	1 cut(s)	433
MluCI	AATT	3 cut(s)	37, 74, 459
MluNI	TGGCCA	1 cut(s)	433
MnlI	CCTC	4 cut(s)	94, 196, 319, 340
Mox20I	TGGCCA	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	433
Msp20I	TGGCCA	1 cut(s)	433
MspA1I	CMGCKG	1 cut(s)	409
MspR9I	CCNGG	1 cut(s)	244
MunI	CAATTG	2 cut(s)	74, 459
MvaI	CCWGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	206, 439
NdeII	GATC	3 cut(s)	3, 22, 42
NlaIII	CATG	3 cut(s)	29, 192, 257
NlaIV	GGNNCC	1 cut(s)	351
PkrI	GCNGC	1 cut(s)	208
Ple19I	CGATCG	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	351
PvuI	CGATCG	1 cut(s)	45
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	3 cut(s)	3, 22, 42
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	3 cut(s)	37, 74, 459
SsiI	CCGC	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	172
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	2 cut(s)	41, 48
TasI	AATT	3 cut(s)	37, 74, 459
TscAI	CASTG	2 cut(s)	13, 93
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	96, 270
TspRI	CASTG	2 cut(s)	13, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.