Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Forward (+)

7115138 .. 7116096

Gene Structure 959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07680.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTGTCTCACCCCAAAGACGACGCTTACCTCACCAACGTAGTTCCCAAGCGCATCCGGCTCTTCATGGAAATCCAGGCTAGGCATGCAGCTCTCCCTTCTGATCCAATCAAGATTACATTGCTGGACGGGAAGGTGAAGGAGGGGAAGAAGTGGGTTACTTCGCCCTTCGACGTTGTGAAGGAGATTTCCAAGAGCTTGGCGTCCAATGCTTTAATTTCTGAGGTCAATGGAGTACTGTGGGACATGACCAGGCCTTTGGAGGGTGACTGTGACCTGAAGCTGTTTACTTTTGAGAATGCTGAAGGGAGGGACATGCACTTTCTGGCACTCTTGCGCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

115

Amino Acids

12.85

Weight (kDa)

6.83

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGS	PF02824	37 - 97	2.5e-15	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	339
AclWI	GGATC	1 cut(s)	98
AcuI	CTGAAG	2 cut(s)	299, 324
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	263
AjnI	CCWGG	2 cut(s)	75, 251
AluBI	AGCT	3 cut(s)	92, 198, 283
AluI	AGCT	3 cut(s)	92, 198, 283
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	89
ArsI	GACNNNNNNTTYG	2 cut(s)	241, 273
AspLEI	GCGC	3 cut(s)	54, 339, 341
AsuHPI	GGTGA	3 cut(s)	25, 148, 278
BbvI	GCAGC	1 cut(s)	101
BciT130I	CCWGG	2 cut(s)	77, 253
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	81
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmcAI	AGTACT	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	77, 253
BmrFI	CCNGG	2 cut(s)	77, 253
BmsI	GCATC	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	77, 253
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	213
BsePI	GCGCGC	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	2 cut(s)	257, 326
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	257, 326
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	339
BspPI	GGATC	1 cut(s)	98
BspQI	GCTCTTC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	119
BssHII	GCGCGC	1 cut(s)	337
BssMI	GATC	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	77, 253
Bst4CI	ACNGT	2 cut(s)	240, 272
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	87, 339
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	3 cut(s)	54, 339, 341
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 86, 209
BstNI	CCWGG	2 cut(s)	77, 253
BstNSI	RCATGY	2 cut(s)	89, 319
BstSCI	CCNGG	2 cut(s)	75, 251
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	101
BstXI	CCANNNNNNTGG	2 cut(s)	199, 259
BsuRI	GGCC	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	87, 339
CfoI	GCGC	3 cut(s)	54, 339, 341
CseI	GACGC	2 cut(s)	32, 192
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	4 cut(s)	67, 86, 247, 316
CviJI	RGCY	6 cut(s)	61, 80, 92, 198, 256, 283
CviKI_1	RGCY	6 cut(s)	61, 80, 92, 198, 256, 283
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	299, 324
EcoRII	CCWGG	2 cut(s)	75, 251
FaeI	CATG	4 cut(s)	70, 89, 250, 319
FaiI	YATR	5 cut(s)	68, 87, 248, 317, 343
FaqI	GGGAC	2 cut(s)	257, 326
FatI	CATG	4 cut(s)	66, 85, 246, 315
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	3 cut(s)	53, 338, 340
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	58
HgaI	GACGC	2 cut(s)	32, 192
HhaI	GCGC	3 cut(s)	54, 339, 341
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	70, 89, 250, 319
Hin6I	GCGC	3 cut(s)	52, 337, 339
HinP1I	GCGC	3 cut(s)	52, 337, 339
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	3 cut(s)	25, 148, 278
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	2 cut(s)	103, 223
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	2 cut(s)	26, 176
HpyAV	CCTTC	6 cut(s)	108, 127, 133, 175, 178, 299
HpyCH4III	ACNGT	2 cut(s)	240, 272
HpyCH4IV	ACGT	2 cut(s)	39, 174
HpyCH4V	TGCA	2 cut(s)	89, 319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 86, 209
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	2 cut(s)	39, 174
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	4 cut(s)	70, 89, 250, 319
HspAI	GCGC	3 cut(s)	52, 337, 339
Kzo9I	GATC	1 cut(s)	103
LguI	GCTCTTC	1 cut(s)	68
LpnPI	CCDG	8 cut(s)	62, 71, 89, 110, 238, 265, 290, 311
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	2 cut(s)	39, 174
MaeIII	GTNAC	3 cut(s)	157, 266, 272
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	55, 160
MluCI	AATT	1 cut(s)	216
MnlI	CCTC	5 cut(s)	41, 136, 217, 256, 303
MseI	TTAA	1 cut(s)	215
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	2 cut(s)	77, 253
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	2 cut(s)	77, 253
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	58, 86, 209
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	4 cut(s)	70, 89, 250, 319
NmuCI	GTSAC	2 cut(s)	266, 272
NspI	RCATGY	2 cut(s)	89, 319
PaeI	GCATGC	1 cut(s)	89
PauI	GCGCGC	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	68
PctI	GAATGC	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	91
Psp6I	CCWGG	2 cut(s)	75, 251
PspGI	CCWGG	2 cut(s)	75, 251
PteI	GCGCGC	1 cut(s)	337
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	103
ScaI	AGTACT	1 cut(s)	237
ScrFI	CCNGG	2 cut(s)	77, 253
SetI	ASST	9 cut(s)	33, 42, 94, 138, 177, 200, 228, 279, 285
SfaNI	GCATC	1 cut(s)	63
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	1 cut(s)	216
SseBI	AGGCCT	1 cut(s)	256
SspMI	CTAG	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	2 cut(s)	75, 251
TaaI	ACNGT	2 cut(s)	240, 272
TaiI	ACGT	2 cut(s)	42, 177
TaqI	TCGA	1 cut(s)	171
TasI	AATT	1 cut(s)	216
TatI	WGTACW	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TseFI	GTSAC	2 cut(s)	266, 272
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	2 cut(s)	266, 272
TspDTI	ATGAA	1 cut(s)	55
XceI	RCATGY	2 cut(s)	89, 319
XspI	CTAG	1 cut(s)	81
ZrmI	AGTACT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.