Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Forward (+)

65053715 .. 65054519

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41194

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTTGACACAAGTGATCGATAGGACCATACAGAAAAGATTTGCATTCATAACTTCGTCCTATTGCATCAAATTTTCCATTTTTCAGGATGTAGTGCATGGGGTACGAGAAGCTCAGATGGCACATTACAACTACATTTTAGTTGTTGGTGACGATGAAGTCCAAACTGGAAAGTTGTCTGGCCACAAACATTTAAGTTGTCCTTCAACAATAGTGTCTGTTATCGAGAATAAGCTTTGTATATGGGCCAGTGGTTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

87

Amino Acids

9.79

Weight (kDa)

7.77

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	207
AluBI	AGCT	2 cut(s)	113, 235
AluI	AGCT	2 cut(s)	113, 235
AoxI	GGCC	2 cut(s)	181, 246
ApoI	RAATTY	1 cut(s)	71
AspS9I	GGNCC	2 cut(s)	24, 246
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	24
BalI	TGGCCA	1 cut(s)	183
BccI	CCATC	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 246
BmsI	GCATC	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	18
Bse1I	ACTGG	2 cut(s)	172, 249
BseCI	ATCGAT	1 cut(s)	18
BseGI	GGATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	172, 249
BshFI	GGCC	2 cut(s)	183, 248
BshVI	ATCGAT	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	183, 248
Bsp143I	GATC	1 cut(s)	15
BspANI	GGCC	2 cut(s)	183, 248
BspCNI	CTCAG	1 cut(s)	127
BspDI	ATCGAT	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	172, 249
BssMI	GATC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	183, 248
BsuTUI	ATCGAT	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	24, 246
ClaI	ATCGAT	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	4 cut(s)	113, 183, 235, 248
CviKI_1	RGCY	4 cut(s)	113, 183, 235, 248
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	24
FaeI	CATG	1 cut(s)	101
FaiI	YATR	5 cut(s)	29, 50, 99, 242, 244
FalI	AAGNNNNNCTT	2 cut(s)	187, 219
FatI	CATG	1 cut(s)	97
FokI	GGATG	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	183, 248
Hin1II	CATG	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	233
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	2 cut(s)	86, 226
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	44, 66, 97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	3 cut(s)	71, 153, 165
LweI	GCATC	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	1 cut(s)	71
MluNI	TGGCCA	1 cut(s)	183
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	24, 246
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	2 cut(s)	24, 246
SetI	ASST	2 cut(s)	115, 237
SfaNI	GCATC	1 cut(s)	75
SgeI	CNNG	7 cut(s)	23, 98, 110, 119, 180, 192, 238
SinI	GGWCC	1 cut(s)	24
Sse9I	AATT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	18, 225
TasI	AATT	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	37, 171
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.