Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Reverse (-)

21732526 .. 21734386

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G261600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTGATGGTGGTCCACGCCAAAGATGATGCCTACCTCGATGCCGTCATTCCCAAGGGCATCCAACTCTTTGAATCCATAGAGGCCCAGCAACATGCTGCTCGACTCCCCTCCGATCCTATCAAGATTACATTGCCCGACGGGAAGGTGGAGGAGGGCAAAAAGTGGATAACTTCCCCTTTTGACATTGCAAGTGAGATTTCAAAGAGTTTGGCTTCCAACGCTTTGATTTCTGAGGTCAATGGGGTTCTATGGGACATCAACAGGCCTTTGGAGGGCGATGCTGAGCTTAAGATCTTCACATTGGACTCATTCGACGACAATGTGGATGTCCGGCATACCTTCTGGCACTCCAGCGCCCACATTATTGGGCAGTATGGATGCAAGCTCTGCATCGGTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

135

Amino Acids

14.8

Weight (kDa)

4.93

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	74, 204
AluBI	AGCT	2 cut(s)	289, 388
AluI	AGCT	2 cut(s)	289, 388
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	2 cut(s)	84, 266
ApeKI	GCWGC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	3 cut(s)	13, 85, 398
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	13, 398
BbvI	GCAGC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	29
BfoI	RGCGCY	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	290
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	1 cut(s)	99
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	100
Bme18I	GGWCC	2 cut(s)	13, 398
BmgT120I	GGNCC	3 cut(s)	13, 85, 398
BmsI	GCATC	5 cut(s)	19, 31, 69, 271, 371
BpmI	CTGGAG	1 cut(s)	337
Bpu1102I	GCTNAGC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse3DI	GCAATG	2 cut(s)	131, 186
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	3 cut(s)	60, 334, 386
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	2 cut(s)	131, 186
BseMII	CTCAG	2 cut(s)	225, 276
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	1 cut(s)	87
BshFI	GGCC	2 cut(s)	86, 268
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	86, 268
Bsp143I	GATC	2 cut(s)	115, 294
Bsp1720I	GCTNAGC	1 cut(s)	285
BspANI	GGCC	2 cut(s)	86, 268
BspCNI	CTCAG	2 cut(s)	226, 277
BspPI	GGATC	1 cut(s)	110
BspTI	CTTAAG	1 cut(s)	290
BsrDI	GCAATG	2 cut(s)	131, 186
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	115, 294
BssT1I	CCWWGG	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	234, 285
BstF5I	GGATG	3 cut(s)	60, 334, 386
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	2 cut(s)	118, 297
BstMBI	GATC	2 cut(s)	115, 294
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 390
BstNSI	RCATGY	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	294
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	86, 268
BtgZI	GCGATG	1 cut(s)	294
BtsCI	GGATG	3 cut(s)	60, 334, 386
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	3 cut(s)	13, 85, 398
CpoI	CGGWCCG	1 cut(s)	398
CspI	CGGWCCG	1 cut(s)	398
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	5 cut(s)	86, 215, 268, 289, 388
CviKI_1	RGCY	5 cut(s)	86, 215, 268, 289, 388
DdeI	CTNAG	2 cut(s)	234, 285
DpnI	GATC	2 cut(s)	117, 296
DpnII	GATC	2 cut(s)	115, 294
Eco130I	CCWWGG	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	13, 398
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	98
FaiI	YATR	5 cut(s)	80, 96, 253, 339, 378
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	3 cut(s)	47, 341, 393
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	337
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	86, 268
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	1 cut(s)	98
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	3 cut(s)	74, 105, 308
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	115, 235
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	2 cut(s)	143, 320
HpyAV	CCTTC	2 cut(s)	139, 352
HpyCH4V	TGCA	3 cut(s)	191, 384, 393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 390
HpyF3I	CTNAG	2 cut(s)	234, 285
Hsp92II	CATG	1 cut(s)	98
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	115, 294
LpnPI	CCDG	5 cut(s)	101, 250, 331, 347, 367
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	5 cut(s)	19, 31, 69, 271, 371
MalI	GATC	2 cut(s)	117, 296
MboI	GATC	2 cut(s)	115, 294
MboII	GAAGA	1 cut(s)	289
MflI	RGATCY	1 cut(s)	294
MlyI	GAGTC	2 cut(s)	99, 302
MmeI	TCCRAC	2 cut(s)	88, 243
MnlI	CCTC	7 cut(s)	47, 76, 121, 145, 148, 229, 268
MseI	TTAA	1 cut(s)	291
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	334
MwoI	GCNNNNNNNGC	2 cut(s)	221, 390
NdeII	GATC	2 cut(s)	115, 294
NlaIII	CATG	1 cut(s)	98
NspI	RCATGY	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	2 cut(s)	99, 302
PpsI	GAGTC	2 cut(s)	99, 302
PspFI	CCCAGC	1 cut(s)	87
PspPI	GGNCC	3 cut(s)	13, 85, 398
PsuI	RGATCY	1 cut(s)	294
Rsr2I	CGGWCCG	1 cut(s)	398
RsrII	CGGWCCG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	115, 294
Sau96I	GGNCC	3 cut(s)	13, 85, 398
SchI	GAGTC	2 cut(s)	99, 302
SetI	ASST	6 cut(s)	39, 150, 240, 291, 344, 390
SfaNI	GCATC	5 cut(s)	19, 31, 69, 271, 371
SinI	GGWCC	2 cut(s)	13, 398
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SseBI	AGGCCT	1 cut(s)	268
StuI	AGGCCT	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	54
TaqI	TCGA	3 cut(s)	39, 103, 315
TaqII	GACCGA	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseI	GCWGC	1 cut(s)	98
TspGWI	ACGGA	1 cut(s)	390
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	13, 398
XceI	RCATGY	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.