Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Forward (+)

14462026 .. 14462651

Gene Structure 626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG141800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGAACAGGCCCTCGAGATTTTCTCTGATAACAAATTCAAGGTAAATGAGTTTGACCTACATTACCCTTCAGAGGGTAAAGAAGGCAAGAGGGAGAGGCCTGTTATGATACACAGAGCTGTATTCGGCTCCTTTGAGCGTTTCTTTGGTATACTTTTGGAGCACTACAAAGGAAAATGGCCCTTCTGGAATAGTCCACGTCAGGCAATTGTTTGCCCCGTCTCAGAGAAATCCGAGGCTTATGCTCTACAGGTGACCTTACGGGCTAGAGATACAGAAGATGAAGATGTCACAGTAATGAGCATTGATGATCTTCTCCAATTCTTCAAAGACGAAGTTGAAGCTTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

117

Amino Acids

13.79

Weight (kDa)

5.07

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	73, 74
AgsI	TTSAA	3 cut(s)	40, 328, 341
AjiI	CACGTC	1 cut(s)	200
AluBI	AGCT	2 cut(s)	119, 344
AluI	AGCT	2 cut(s)	119, 344
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	3 cut(s)	9, 98, 179
ApoI	RAATTY	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	10, 180
AsuHPI	GGTGA	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	165
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	14
BmgBI	CACGTC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	10, 180
BmiI	GGNNCC	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BsaJI	CCNNGG	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 74
BseDI	CCNNGG	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	73, 74
BseMII	CTCAG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	11, 100, 181
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	73, 74
BsmAI	GTCTC	1 cut(s)	226
BsmBI	CGTCTC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	11, 100, 181
BsoBI	CYCGRG	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	310
BspANI	GGCC	3 cut(s)	11, 100, 181
BspCNI	CTCAG	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	310
BssNAI	GTATAC	1 cut(s)	152
Bst1107I	GTATAC	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	223
BstEII	GGTNACC	1 cut(s)	253
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	310
BstPI	GGTNACC	1 cut(s)	253
BstSFI	CTRYAG	1 cut(s)	248
BstZ17I	GTATAC	1 cut(s)	152
BsuRI	GGCC	3 cut(s)	11, 100, 181
BtrI	CACGTC	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	10, 180
CviJI	RGCY	8 cut(s)	11, 100, 119, 129, 181, 239, 266, 344
CviKI_1	RGCY	8 cut(s)	11, 100, 119, 129, 181, 239, 266, 344
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	14
Eco91I	GGTNACC	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	226
FaiI	YATR	3 cut(s)	107, 152, 243
FblI	GTMKAC	1 cut(s)	151
FspBI	CTAG	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	11, 100, 181
HindIII	AAGCTT	1 cut(s)	342
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	152, 197
Hpy188I	TCNGA	4 cut(s)	28, 73, 226, 235
Hpy188III	TCNNGA	2 cut(s)	16, 187
Hpy8I	GTNNAC	2 cut(s)	152, 197
HpyAV	CCTTC	3 cut(s)	77, 78, 193
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	223
HpySE526I	ACGT	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	2 cut(s)	134, 160
LpnPI	CCDG	4 cut(s)	114, 172, 188, 236
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	2 cut(s)	253, 289
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	4 cut(s)	290, 296, 305, 316
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	3 cut(s)	35, 207, 320
MnlI	CCTC	5 cut(s)	23, 67, 84, 90, 229
MslI	CAYNNNNRTG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	207
NdeII	GATC	1 cut(s)	310
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	2 cut(s)	253, 289
PaeR7I	CTCGAG	1 cut(s)	14
PceI	AGGCCT	1 cut(s)	100
PspEI	GGTNACC	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	2 cut(s)	10, 180
RseI	CAYNNNNRTG	1 cut(s)	296
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	2 cut(s)	10, 180
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	7 cut(s)	45, 60, 121, 202, 255, 260, 346
SfcI	CTRYAG	1 cut(s)	248
Sfr274I	CTCGAG	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	3 cut(s)	35, 207, 320
SseBI	AGGCCT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	267
StuI	AGGCCT	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	15
TasI	AATT	3 cut(s)	35, 207, 320
TseFI	GTSAC	2 cut(s)	253, 289
Tsp45I	GTSAC	2 cut(s)	253, 289
TspDTI	ATGAA	1 cut(s)	297
XapI	RAATTY	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.