Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Forward (+)

18287965 .. 18294474

Gene Structure 6510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2184 bp

ATGCTGCAATGCTCTAAAACCTGGATATCAACAGCAGCCGCTTTCTCATTTTCTCTTCTCCGCCGTAACTCTCCCTCATTCTCCACTTTGACTCCGCCGCCGTACCGGAAAGACTTCTCTTTCTCCCTCCTACAACCACCGCCGGCCGCCGCCATGGTGCCCCACCCCAAAGACGACGCTTACCTCGATAGCGTAATTCCCAAGCGAATCCAGCTCTTCGAGGCCATCCAGGCTCAGCAGCTCGCCCACCGCCAGTCCCTCCCTTCCGATCCAATCAAGATTACGTTGCCCGACGGGAAGGTGAAGGAGGGGAAGACGTGGGTGACTTCGCCCTTCGACGTTGCGAAGGAGATTTCGAAGAGCTTGGCGTCGAATGCCTTGATTTCTGAGGTCAATGGGGTACTGTGGGACATGAGTAGGCCTTTGGAGGGTGACTGTGAGCTCAAGCTCTTCACATTTGACAATGATGAAGGCAGGGACACTTTCTGGCATTCTAGCGCGCACATTCTCGGACAGGCACTTGAGGTTGAGTACGGATGCAAGTTGTGTATCGGTCCCTGCACCACCAGAGGAGAGGGTTTCTATTATGATGCATTTTATGGTGATTTGGGGTTGAACGAGGATCACTTCAAGCAAATTGAATCAGGAGCAGATAAGGCTGTTAAGGCCAAACAGCCATTTGAGCGCATTGAAGTAACAAGGGATCAGGCACTTGAGATTTTTGCTGATAACAGATTCAAGGTTGAAATCATCAATGATCTTCCTGCTGACAAAACTATCACCGTCTACAGATGTGGCCCCTTGGTTGACTTGTGTCGTGGACCGCACATACCAAACACATCATTTGTCAAAGCATTGGCATGTTTGAAGGCTTCTTCCGCCTACTGGAGAGGAAATAAAGATCGTGAAAGCTTACAGAGAGTTTATGGAATATCTTATCCTGATAAGAAAAGTTTGCAGTTATATCTCAAGCGTCTGGAAGAAGCAAAAAAATATGATCATAGATTGTTAGGTACAAAGCAGGAGCTGTTCTTTAATCACCCACTTAGTCCAGGAAGTTGGTTCTTCCTGCCCAATGGCACCCGGATTTATAACAAGCTCATGGAGTTTATAAAAAATCAATACAGAGAGAGAGGATACCAAGAGGTTATATCGCCAAACATGTACAATATGCAACTTTGGGAAACATCTGGTCATGCTGCAAATTACAAGGAGAATATGTTTGTCTTTGAGATTGAGAAACAGGAGTTTGGATTGAAGCCAATGAATTGTCCGGGGCATTGTTTAATGTTTCAGCACAGAGTTCGTTCTTATAGAGAGCTTCCTCTTCGACTGGCTGACTTTGGGGTTTTGCACCGGAATGAGGCCAGTGGTGCACTCACTGGATTAACTCGTGTCAGGAGATTCCAGCAGGATGATGCTCATATCTTTTGCAGGGAGTCACAAATAAAAGATGAAGTTACGGGCGTCTTAGACTTCATCCAATATACCTACGATATATTTGGCTTCACTTTTGATCTGAAGCTATCAACAAGGCCAGAAAAGTATCTTGGAGAGATAGAAACATGGGAGAAAGCTGAGGCAGCTCTTACAGAAGCATTAAATGAGTTTGGCAAACCCTGGCAGATAAATGAAGGGGATGGTGCATTTTACGGACCAAAGATAGATATCAGTGTGTCTGATGCATTGAACAGGAAGTTTCAGTGTGCAACATTACAGCTTGATTTTCAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAGGGAGGCACCTGTTATGATACACAGAGCCATTTTGGGTTCTGTTGAGCGTATGTTTGCTATACTGTTGGAGCACTACAAGGGGAAATGGCCATTCTGGCTTAGTCCACGTCAGGCAATTGTTTGCCCTGTCTCGGACAAATCCCAGCCCTATGCTCAGCAGGTCCGGGACAAGATCTTTCAGGCTGGTTATTTTGTTGATGTTGACACAAGTGATAGGACAATACAGAAAAAGGTACGAGAAGCTCAGATGGCACAGTACAACTACATTCTAGTTGTTGGTGAGGAGGAAGTCAAAACTGGACAGGTGAGCGTACGGGTTAGAGATAAGGCAGATTCCAACGTAATGAGCATGGATAGCCTACTCAAACACTTTAAGGAGGAAGTTGAAGCTTTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

727

Amino Acids

83.4

Weight (kDa)

6.42

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGS	PF02824	92 - 152	3.5e-17	TGS domain
tRNA_SAD	PF07973	260 - 309	3e-12	Threonyl and Alanyl tRNA synthetase second additional domain
tRNA-synt_2b	PF00587	408 - 620	1.3e-45	tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon	PF03129	632 - 721	1.1e-21	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1092, 1112
Acc36I	ACCTGC	2 cut(s)	1744, 1933
AccB1I	GGYRCC	3 cut(s)	157, 1079, 1789
AccI	GTMKAC	1 cut(s)	786
AccII	CGCG	1 cut(s)	500
AclWI	GGATC	3 cut(s)	263, 630, 711
AcoI	YGGCCR	2 cut(s)	144, 1871
AcuI	CTGAAG	1 cut(s)	1541
AcyI	GRCGYC	2 cut(s)	368, 1467
AfaI	GTAC	8 cut(s)	104, 402, 533, 1015, 1166, 2019, 2042, 2097
AfiI	CCNNNNNNNGG	4 cut(s)	428, 885, 1363, 1915
AflIII	ACRYGT	1 cut(s)	1161
AjiI	CACGTC	2 cut(s)	318, 1892
AjnI	CCWGG	4 cut(s)	20, 228, 1051, 1619
AjuI	GAANNNNNNNTTGG	2 cut(s)	1533, 1565
Alw21I	GWGCWC	3 cut(s)	444, 1378, 1857
Alw26I	GTCTC	1 cut(s)	1918
Alw44I	GTGCAC	1 cut(s)	1374
AlwI	GGATC	3 cut(s)	263, 630, 711
AlwNI	CAGNNNCTG	1 cut(s)	1027
AoxI	GGCC	8 cut(s)	144, 222, 419, 666, 796, 1365, 1535, 1871
ApaLI	GTGCAC	1 cut(s)	1374
ApeKI	GCWGC	5 cut(s)	4, 35, 238, 1199, 1583
Asp700I	GAANNNNTTC	2 cut(s)	113, 2175
AspLEI	GCGC	3 cut(s)	500, 502, 687
AspS9I	GGNCC	5 cut(s)	554, 797, 821, 1655, 1945
AsuC2I	CCSGG	3 cut(s)	1084, 1275, 1949
AsuHPI	GGTGA	9 cut(s)	313, 334, 443, 614, 772, 1031, 1781, 2075, 2101
AsuII	TTCGAA	1 cut(s)	356
AvaII	GGWCC	4 cut(s)	554, 821, 1655, 1945
BaeGI	GKGCMC	2 cut(s)	162, 1378
BalI	TGGCCA	1 cut(s)	1873
BanI	GGYRCC	3 cut(s)	157, 1079, 1789
BanII	GRGCYC	1 cut(s)	444
BauI	CACGAG	1 cut(s)	1392
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	3 cut(s)	444, 1378, 1857
BbvCI	CCTCAGC	1 cut(s)	1578
BbvI	GCAGC	4 cut(s)	47, 250, 1186, 1595
BccI	CCATC	3 cut(s)	233, 1634, 2026
BceAI	ACGGC	2 cut(s)	48, 85
BcgI	CGANNNNNNTGC	2 cut(s)	1286, 1320
BciT130I	CCWGG	4 cut(s)	22, 230, 1053, 1621
BciVI	GTATCC	1 cut(s)	1130
BclI	TGATCA	1 cut(s)	997
BcnI	CCSGG	3 cut(s)	1084, 1275, 1949
BcoDI	GTCTC	1 cut(s)	1918
BfaI	CTAG	2 cut(s)	495, 2054
BfmI	CTRYAG	1 cut(s)	787
BfuAI	ACCTGC	2 cut(s)	1744, 1933
BfuI	GTATCC	1 cut(s)	1130
BglI	GCCNNNNNGGC	2 cut(s)	230, 1879
BglII	AGATCT	1 cut(s)	1956
BisI	GCNGC	9 cut(s)	5, 36, 39, 98, 147, 150, 239, 1200, 1584
BlpI	GCTNAGC	2 cut(s)	234, 1938
BlsI	GCNGC	9 cut(s)	6, 37, 40, 99, 148, 151, 240, 1201, 1585
Bme1390I	CCNGG	7 cut(s)	22, 230, 1053, 1084, 1275, 1621, 1949
Bme18I	GGWCC	4 cut(s)	554, 821, 1655, 1945
BmgBI	CACGTC	2 cut(s)	318, 1892
BmgT120I	GGNCC	5 cut(s)	554, 797, 821, 1655, 1945
BmiI	GGNNCC	5 cut(s)	159, 556, 799, 1081, 1791
BmrFI	CCNGG	7 cut(s)	22, 230, 1053, 1084, 1275, 1621, 1949
BmsI	GCATC	4 cut(s)	527, 580, 1408, 1672
BoxI	GACNNNNGTC	1 cut(s)	813
BpiI	GAAGAC	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	907
Bpu10I	CCTNAGC	1 cut(s)	1578
Bpu1102I	GCTNAGC	2 cut(s)	234, 1938
Bpu14I	TTCGAA	1 cut(s)	356
BpuEI	CTTGAG	4 cut(s)	428, 542, 734, 953
BpuMI	CCSGG	3 cut(s)	1084, 1275, 1949
BsaBI	GATNNNNATC	1 cut(s)	1667
BsaHI	GRCGYC	2 cut(s)	368, 1467
BsaJI	CCNNGG	4 cut(s)	153, 801, 1274, 1619
BsaWI	WCCGGW	2 cut(s)	105, 1356
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 1205, 1235
Bsc4I	CCNNNNNNNGG	4 cut(s)	428, 885, 1363, 1915
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	6 cut(s)	253, 890, 1338, 1368, 1387, 2086
Bse3DI	GCAATG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	1667
BseBI	CCWGG	4 cut(s)	22, 230, 1053, 1621
BseDI	CCNNGG	4 cut(s)	153, 801, 1274, 1619
BseGI	GGATG	5 cut(s)	225, 542, 1420, 1479, 1645
BseJI	GATNNNNATC	1 cut(s)	1667
BseLI	CCNNNNNNNGG	4 cut(s)	428, 885, 1363, 1915
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	6 cut(s)	248, 378, 1569, 1773, 1952, 2042
BseNI	ACTGG	6 cut(s)	253, 890, 1338, 1368, 1387, 2086
BsePI	GCGCGC	1 cut(s)	498
BseRI	GAGGAG	2 cut(s)	585, 2081
BseSI	GKGCMC	2 cut(s)	162, 1378
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	4 cut(s)	47, 250, 1186, 1595
BseYI	CCCAGC	1 cut(s)	1926
BsgI	GTGCAG	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	500
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	8 cut(s)	146, 224, 421, 668, 798, 1367, 1537, 1873
BshNI	GGYRCC	3 cut(s)	157, 1079, 1789
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	3 cut(s)	444, 1378, 1857
BsiSI	CCGG	6 cut(s)	106, 143, 1084, 1274, 1357, 1948
BsiWI	CGTACG	1 cut(s)	2095
BslFI	GGGAC	5 cut(s)	241, 422, 491, 540, 1964
BslI	CCNNNNNNNGG	4 cut(s)	428, 885, 1363, 1915
BsmAI	GTCTC	1 cut(s)	1918
BsmFI	GGGAC	5 cut(s)	241, 422, 491, 540, 1964
BsmI	GAATGC	2 cut(s)	379, 490
BsnI	GGCC	8 cut(s)	146, 224, 421, 668, 798, 1367, 1537, 1873
Bsp119I	TTCGAA	1 cut(s)	356
Bsp1286I	GDGCHC	4 cut(s)	162, 444, 1378, 1857
Bsp1407I	TGTACA	1 cut(s)	1164
Bsp143I	GATC	8 cut(s)	268, 622, 703, 757, 901, 997, 1516, 1956
Bsp1720I	GCTNAGC	2 cut(s)	234, 1938
Bsp19I	CCATGG	1 cut(s)	153
BspANI	GGCC	8 cut(s)	146, 224, 421, 668, 798, 1367, 1537, 1873
BspCNI	CTCAG	6 cut(s)	247, 379, 1570, 1772, 1951, 2041
BspFNI	CGCG	1 cut(s)	500
BspLI	GGNNCC	5 cut(s)	159, 556, 799, 1081, 1791
BspMI	ACCTGC	2 cut(s)	1744, 1933
BspPI	GGATC	3 cut(s)	263, 630, 711
BspQI	GCTCTTC	3 cut(s)	221, 353, 455
BspT104I	TTCGAA	1 cut(s)	356
BspT107I	GGYRCC	3 cut(s)	157, 1079, 1789
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	142
BsrGI	TGTACA	1 cut(s)	1164
BsrI	ACTGG	6 cut(s)	253, 890, 1338, 1368, 1387, 2086
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	4 cut(s)	153, 801, 1274, 1619
BssHII	GCGCGC	1 cut(s)	498
BssMI	GATC	8 cut(s)	268, 622, 703, 757, 901, 997, 1516, 1956
BssNI	GRCGYC	2 cut(s)	368, 1467
BssSI	CACGAG	1 cut(s)	1392
BssT1I	CCWWGG	2 cut(s)	153, 801
Bst2BI	CACGAG	1 cut(s)	1392
Bst2UI	CCWGG	4 cut(s)	22, 230, 1053, 1621
Bst4CI	ACNGT	5 cut(s)	405, 437, 784, 1848, 2040
Bst6I	CTCTTC	5 cut(s)	60, 221, 353, 455, 1332
BstACI	GRCGYC	2 cut(s)	368, 1467
BstAUI	TGTACA	1 cut(s)	1164
BstBI	TTCGAA	1 cut(s)	356
BstC8I	GCNNGC	4 cut(s)	144, 243, 500, 1741
BstDEI	CTNAG	9 cut(s)	234, 387, 1046, 1471, 1578, 1759, 1883, 1938, 2028
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	5 cut(s)	225, 542, 1420, 1479, 1645
BstFNI	CGCG	1 cut(s)	500
BstHHI	GCGC	3 cut(s)	500, 502, 687
BstKTI	GATC	8 cut(s)	271, 625, 706, 760, 904, 1000, 1519, 1959
BstMAI	GTCTC	1 cut(s)	1918
BstMBI	GATC	8 cut(s)	268, 622, 703, 757, 901, 997, 1516, 1956
BstMCI	CGRYCG	1 cut(s)	147
BstNI	CCWGG	4 cut(s)	22, 230, 1053, 1621
BstNSI	RCATGY	2 cut(s)	864, 1165
BstPAI	GACNNNNGTC	1 cut(s)	813
BstSCI	CCNGG	7 cut(s)	20, 228, 1051, 1082, 1273, 1619, 1947
BstSFI	CTRYAG	1 cut(s)	787
BstSLI	GKGCMC	2 cut(s)	162, 1378
BstUI	CGCG	1 cut(s)	500
BstV1I	GCAGC	4 cut(s)	47, 250, 1186, 1595
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	1956
BstXI	CCANNNNNNTGG	1 cut(s)	1059
BstYI	RGATCY	1 cut(s)	1956
BstZI	CGGCCG	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	1130
BsuRI	GGCC	8 cut(s)	146, 224, 421, 668, 798, 1367, 1537, 1873
BtgI	CCRYGG	1 cut(s)	153
BtrI	CACGTC	2 cut(s)	318, 1892
BtsCI	GGATG	5 cut(s)	225, 542, 1420, 1479, 1645
BtsIMutI	CAGTG	4 cut(s)	1375, 1380, 1678, 1709
BveI	ACCTGC	2 cut(s)	1744, 1933
Cac8I	GCNNGC	4 cut(s)	144, 243, 500, 1741
CaiI	CAGNNNCTG	1 cut(s)	1027
CfoI	GCGC	3 cut(s)	500, 502, 687
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	5 cut(s)	554, 797, 821, 1655, 1945
CseI	GACGC	4 cut(s)	185, 357, 962, 1456
Csp6I	GTAC	8 cut(s)	103, 401, 532, 1014, 1165, 2018, 2041, 2096
CviAII	CATG	8 cut(s)	154, 412, 861, 1102, 1162, 1196, 1566, 2134
CviQI	GTAC	8 cut(s)	103, 401, 532, 1014, 1165, 2018, 2041, 2096
DdeI	CTNAG	9 cut(s)	234, 387, 1046, 1471, 1578, 1759, 1883, 1938, 2028
DpnI	GATC	8 cut(s)	270, 624, 705, 759, 903, 999, 1518, 1958
DpnII	GATC	8 cut(s)	268, 622, 703, 757, 901, 997, 1516, 1956
EaeI	YGGCCR	2 cut(s)	144, 1871
EagI	CGGCCG	1 cut(s)	144
Eam1104I	CTCTTC	5 cut(s)	60, 221, 353, 455, 1332
EarI	CTCTTC	5 cut(s)	60, 221, 353, 455, 1332
EciI	GGCGGA	3 cut(s)	50, 84, 868
Ecl136II	GAGCTC	1 cut(s)	442
EclXI	CGGCCG	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	153, 801
Eco147I	AGGCCT	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	444
Eco32I	GATATC	2 cut(s)	27, 1669
Eco47I	GGWCC	4 cut(s)	554, 821, 1655, 1945
Eco52I	CGGCCG	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	1541
EcoICRI	GAGCTC	1 cut(s)	442
EcoRII	CCWGG	4 cut(s)	20, 228, 1051, 1619
EcoRV	GATATC	2 cut(s)	27, 1669
EcoT14I	CCWWGG	2 cut(s)	153, 801
EcoT22I	ATGCAT	2 cut(s)	595, 1687
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	2 cut(s)	153, 801
FaeI	CATG	8 cut(s)	157, 415, 864, 1105, 1165, 1199, 1569, 2137
FaqI	GGGAC	5 cut(s)	241, 422, 491, 540, 1964
FatI	CATG	8 cut(s)	153, 411, 860, 1101, 1161, 1195, 1565, 2133
FbaI	TGATCA	1 cut(s)	997
FblI	GTMKAC	1 cut(s)	786
Fnu4HI	GCNGC	9 cut(s)	5, 36, 39, 98, 147, 150, 239, 1200, 1584
FokI	GGATG	5 cut(s)	212, 549, 1427, 1466, 1652
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	9 cut(s)	5, 36, 39, 98, 147, 150, 239, 1200, 1584
FspBI	CTAG	2 cut(s)	495, 2054
GlaI	GCGC	3 cut(s)	499, 501, 686
GluI	GCNGC	9 cut(s)	5, 36, 39, 98, 147, 150, 239, 1200, 1584
GsaI	CCCAGC	1 cut(s)	1930
GsuI	CTGGAG	1 cut(s)	907
HaeIII	GGCC	8 cut(s)	146, 224, 421, 668, 798, 1367, 1537, 1873
HapII	CCGG	6 cut(s)	106, 143, 1084, 1274, 1357, 1948
HgaI	GACGC	4 cut(s)	185, 357, 962, 1456
HhaI	GCGC	3 cut(s)	500, 502, 687
Hin1I	GRCGYC	2 cut(s)	368, 1467
Hin1II	CATG	8 cut(s)	157, 415, 864, 1105, 1165, 1199, 1569, 2137
Hin6I	GCGC	3 cut(s)	498, 500, 685
HinP1I	GCGC	3 cut(s)	498, 500, 685
HincII	GTYRAC	2 cut(s)	808, 1987
HindII	GTYRAC	2 cut(s)	808, 1987
HindIII	AAGCTT	2 cut(s)	910, 2172
HinfI	GANTC	7 cut(s)	91, 207, 641, 735, 1404, 1439, 2117
HpaII	CCGG	6 cut(s)	106, 143, 1084, 1274, 1357, 1948
HphI	GGTGA	9 cut(s)	313, 334, 443, 614, 772, 1031, 1781, 2075, 2101
Hpy166II	GTNNAC	6 cut(s)	787, 808, 821, 1376, 1889, 1987
Hpy188I	TCNGA	7 cut(s)	268, 388, 512, 1521, 1681, 1918, 2031
Hpy188III	TCNNGA	6 cut(s)	277, 645, 905, 941, 977, 1399
Hpy8I	GTNNAC	6 cut(s)	787, 808, 821, 1376, 1889, 1987
Hpy99I	CGWCG	4 cut(s)	179, 296, 341, 373
HpyAV	CCTTC	9 cut(s)	273, 292, 298, 340, 343, 464, 862, 1628, 1769
HpyCH4III	ACNGT	5 cut(s)	405, 437, 784, 1848, 2040
HpyCH4IV	ACGT	5 cut(s)	284, 317, 339, 1891, 2124
HpyF3I	CTNAG	9 cut(s)	234, 387, 1046, 1471, 1578, 1759, 1883, 1938, 2028
HpySE526I	ACGT	5 cut(s)	284, 317, 339, 1891, 2124
Hsp92I	GRCGYC	2 cut(s)	368, 1467
Hsp92II	CATG	8 cut(s)	157, 415, 864, 1105, 1165, 1199, 1569, 2137
HspAI	GCGC	3 cut(s)	498, 500, 685
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	997
Kzo9I	GATC	8 cut(s)	268, 622, 703, 757, 901, 997, 1516, 1956
LguI	GCTCTTC	3 cut(s)	221, 353, 455
LmnI	GCTCC	3 cut(s)	647, 1024, 1852
Lsp1109I	GCAGC	4 cut(s)	47, 250, 1186, 1595
LweI	GCATC	4 cut(s)	527, 580, 1408, 1672
MaeI	CTAG	2 cut(s)	495, 2054
MaeII	ACGT	5 cut(s)	284, 317, 339, 1891, 2124
MaeIII	GTNAC	6 cut(s)	65, 322, 431, 694, 1440, 1459
MalI	GATC	8 cut(s)	270, 624, 705, 759, 903, 999, 1518, 1958
MboI	GATC	8 cut(s)	268, 622, 703, 757, 901, 997, 1516, 1956
MfeI	CAATTG	1 cut(s)	1899
MflI	RGATCY	1 cut(s)	1956
MhlI	GDGCHC	4 cut(s)	162, 444, 1378, 1857
MlsI	TGGCCA	1 cut(s)	1873
MluCI	AATT	5 cut(s)	195, 636, 1204, 1267, 1899
MluNI	TGGCCA	1 cut(s)	1873
MlyI	GAGTC	2 cut(s)	85, 1448
MmeI	TCCRAC	2 cut(s)	1830, 2145
Mox20I	TGGCCA	1 cut(s)	1873
Mph1103I	ATGCAT	2 cut(s)	595, 1687
MroNI	GCCGGC	1 cut(s)	142
MroXI	GAANNNNTTC	2 cut(s)	113, 2175
MscI	TGGCCA	1 cut(s)	1873
MseI	TTAA	6 cut(s)	663, 1035, 1286, 1388, 1601, 2157
MslI	CAYNNNNRTG	2 cut(s)	859, 1359
Msp20I	TGGCCA	1 cut(s)	1873
MspI	CCGG	6 cut(s)	106, 143, 1084, 1274, 1357, 1948
MspR9I	CCNGG	7 cut(s)	22, 230, 1053, 1084, 1275, 1621, 1949
MunI	CAATTG	1 cut(s)	1899
Mva1269I	GAATGC	2 cut(s)	379, 490
MvaI	CCWGG	4 cut(s)	22, 230, 1053, 1621
MvnI	CGCG	1 cut(s)	500
NaeI	GCCGGC	1 cut(s)	144
NciI	CCSGG	3 cut(s)	1084, 1275, 1949
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	8 cut(s)	268, 622, 703, 757, 901, 997, 1516, 1956
NgoMIV	GCCGGC	1 cut(s)	142
NlaIII	CATG	8 cut(s)	157, 415, 864, 1105, 1165, 1199, 1569, 2137
NlaIV	GGNNCC	5 cut(s)	159, 556, 799, 1081, 1791
NmuCI	GTSAC	3 cut(s)	322, 431, 1440
NsiI	ATGCAT	2 cut(s)	595, 1687
NspI	RCATGY	2 cut(s)	864, 1165
NspV	TTCGAA	1 cut(s)	356
PauI	GCGCGC	1 cut(s)	498
PceI	AGGCCT	1 cut(s)	421
PciI	ACATGT	1 cut(s)	1161
PciSI	GCTCTTC	3 cut(s)	221, 353, 455
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	2 cut(s)	379, 490
PdiI	GCCGGC	1 cut(s)	144
PdmI	GAANNNNTTC	2 cut(s)	113, 2175
PfeI	GAWTC	5 cut(s)	207, 641, 735, 1404, 2117
Pfl23II	CGTACG	1 cut(s)	2095
PfoI	TCCNGGA	2 cut(s)	1051, 1947
PkrI	GCNGC	9 cut(s)	6, 37, 40, 99, 148, 151, 240, 1201, 1585
PleI	GAGTC	2 cut(s)	85, 1447
PpsI	GAGTC	2 cut(s)	85, 1447
PscI	ACATGT	1 cut(s)	1161
PshAI	GACNNNNGTC	1 cut(s)	813
PsiI	TTATAA	2 cut(s)	1092, 1112
Psp124BI	GAGCTC	1 cut(s)	444
Psp6I	CCWGG	4 cut(s)	20, 228, 1051, 1619
PspFI	CCCAGC	1 cut(s)	1926
PspGI	CCWGG	4 cut(s)	20, 228, 1051, 1619
PspLI	CGTACG	1 cut(s)	2095
PspN4I	GGNNCC	5 cut(s)	159, 556, 799, 1081, 1791
PspPI	GGNCC	5 cut(s)	554, 797, 821, 1655, 1945
PstNI	CAGNNNCTG	1 cut(s)	1027
PsuI	RGATCY	1 cut(s)	1956
PteI	GCGCGC	1 cut(s)	498
RsaI	GTAC	8 cut(s)	104, 402, 533, 1015, 1166, 2019, 2042, 2097
RsaNI	GTAC	8 cut(s)	103, 401, 532, 1014, 1165, 2018, 2041, 2096
RseI	CAYNNNNRTG	2 cut(s)	859, 1359
SacI	GAGCTC	1 cut(s)	444
SapI	GCTCTTC	3 cut(s)	221, 353, 455
SaqAI	TTAA	6 cut(s)	663, 1035, 1286, 1388, 1601, 2157
SatI	GCNGC	9 cut(s)	5, 36, 39, 98, 147, 150, 239, 1200, 1584
Sau3AI	GATC	8 cut(s)	268, 622, 703, 757, 901, 997, 1516, 1956
Sau96I	GGNCC	5 cut(s)	554, 797, 821, 1655, 1945
SchI	GAGTC	2 cut(s)	85, 1448
ScrFI	CCNGG	7 cut(s)	22, 230, 1053, 1084, 1275, 1621, 1949
SduI	GDGCHC	4 cut(s)	162, 444, 1378, 1857
SfaNI	GCATC	4 cut(s)	527, 580, 1408, 1672
SfcI	CTRYAG	1 cut(s)	787
SfuI	TTCGAA	1 cut(s)	356
SinI	GGWCC	4 cut(s)	554, 821, 1655, 1945
SmiMI	CAYNNNNRTG	2 cut(s)	859, 1359
SmlI	CTYRAG	4 cut(s)	443, 521, 713, 968
SmoI	CTYRAG	4 cut(s)	443, 521, 713, 968
Sse9I	AATT	5 cut(s)	195, 636, 1204, 1267, 1899
SseBI	AGGCCT	1 cut(s)	421
SspMI	CTAG	2 cut(s)	495, 2054
SstI	GAGCTC	1 cut(s)	444
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	7 cut(s)	20, 228, 1051, 1082, 1273, 1619, 1947
StyI	CCWWGG	2 cut(s)	153, 801
TaaI	ACNGT	5 cut(s)	405, 437, 784, 1848, 2040
TaiI	ACGT	5 cut(s)	287, 320, 342, 1894, 2127
TaqI	TCGA	6 cut(s)	186, 219, 336, 356, 371, 1330
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	5 cut(s)	195, 636, 1204, 1267, 1899
TatI	WGTACW	2 cut(s)	1164, 2040
TauI	GCSGC	4 cut(s)	41, 100, 149, 152
TfiI	GAWTC	5 cut(s)	207, 641, 735, 1404, 2117
Tru1I	TTAA	6 cut(s)	663, 1035, 1286, 1388, 1601, 2157
Tru9I	TTAA	6 cut(s)	663, 1035, 1286, 1388, 1601, 2157
TscAI	CASTG	4 cut(s)	1375, 1387, 1678, 1709
TseFI	GTSAC	3 cut(s)	322, 431, 1440
TseI	GCWGC	5 cut(s)	4, 35, 238, 1199, 1583
Tsp45I	GTSAC	3 cut(s)	322, 431, 1440
TspDTI	ATGAA	6 cut(s)	483, 1280, 1468, 1470, 1647, 2168
TspGWI	ACGGA	2 cut(s)	549, 1668
TspRI	CASTG	4 cut(s)	1375, 1387, 1678, 1709
VneI	GTGCAC	1 cut(s)	1374
VpaK11BI	GGWCC	4 cut(s)	554, 821, 1655, 1945
XceI	RCATGY	2 cut(s)	864, 1165
XmiI	GTMKAC	1 cut(s)	786
XmnI	GAANNNNTTC	2 cut(s)	113, 2175
XspI	CTAG	2 cut(s)	495, 2054
Zsp2I	ATGCAT	2 cut(s)	595, 1687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.