Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001448

Physical Location & Seq

Genomic Coordinates Forward (+)

66893672 .. 66894440

Gene Structure 769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005338

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTGGGATCTTTCCTCTCCAACAAAGGTGAAGGAGGGAAAGAAGTGGGTGACTTCGCCTTTCGACGTTGCGAAGGAGGTTTCAAAGAGCTTGGCGTCGAATGCGTTGGTTGCTGAGGTGAATGGGGTACTGTGGGACATGAGCAGGCCTTTGGAGGGTGACTGTGAGCTGAAGCTGTTCACATTTGACAGTGATGAAGGCCGGTACACTTTCTGGCATTCTAGCGCACACATTCTCGGACAGGCACTTGATGGTTTGTATGGATGTAAACTCTGCATTGGTCCCTGCCACACTAGTATAGGAGAGGGTTTCTATTATGATGCATTTTATGGTAATTTGGGTTTGAAAGATGAACACTTGAAGCAAATTGAATCAGAAGCAGACAAGGCTGTTAAGGCCAAACAGCCATTTGATCGCATTCTAGTATCAAGGGATCAGGCACTTGAGATTTTCTCTGATAATAGATTCAAGGTTGAAATCATCAATGATCTTCCAGCTGATGACAAAACTATCACAGTCTACAGATGTGGCTCCTTGGTTGATTTGTGTTGTGGACCGCACATACCAAACACATCATTTGTCAAAGCGTTTGCATGTGTGAATGCTTCTTCTGCCTACTGGAGAGGAAATAAAGACCGTGAAAGCTTACAGAGAGTTTATGGAGTGTCTTATCCTGGAGCTGTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005886 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071944 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon TGS tRNA-synt_2b tRNA_SAD

Protein Analysis

230

Amino Acids

25.49

Weight (kDa)

5.57

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TGS	PF02824	9 - 61	1.6e-13	TGS domain
tRNA_SAD	PF07973	171 - 220	2.9e-14	Threonyl and Alanyl tRNA synthetase second additional domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001448)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18130 AT5G26830
fragaria_vesca	FvH4_3g11970 FvH4_4g07680 FvH4_4g07680 FvH4_4g07680 FvH4_4g07690 FvH4_4g07690 FvH4_6g47820
malus_domestica	MD13G1089000.v1.1 MD16G1089100.v1.1
prunus_persica	Prupe.1G256800_v2.0.a1 Prupe.7G261600_v2.0.a1 Prupe.8G070800_v2.0.a1 Prupe.8G074400_v2.0.a1 Prupe.8G074400_v2.0.a1
pyrus_communis	pycom13g07710 pycom16g07630
rosa_chinensis	RchiOBHm_Chr4g0400731 RchiOBHm_Chr4g0444241 RchiOBHm_Chr5g0019561 RchiOBHm_Chr5g0019571 RchiOBHm_Chr5g0025481
rosa_laevigata	RLG00000005338 RLG00000008608 RLG00000009182 RLG00000032456
rosa_multiflora	Rmu_sc0002636.1_g000026 Rmu_sc0002759.1_g000056
rosa_roxburghii	Rroxscaffold_155G00443880 Rroxscaffold_1G00058510 Rroxscaffold_3G00273610 Rroxscaffold_5G00345580
rosa_rugosa	Rorug04G0025500 Rorug04G0093800 Rorug05G0052000 Rorug06G0426500
rosa_samantha	Rh4AG103300 Rh4AG411800 Rh4CG111600 Rh4DG095200 Rh5AG142600 Rh5BG141100 Rh5CG153100 Rh5CG153200 Rh5DG141700 Rh5DG141800 Rh7CG027000 Rh7CG027200 Rh7DG026700
rosa_wichuraiana	Rw4G008360 Rw5G012620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	2 cut(s)	15, 441
AcuI	CTGAAG	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	2 cut(s)	129, 206
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	6 cut(s)	84, 346, 361, 371, 469, 476
AhlI	ACTAGT	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	6 cut(s)	90, 169, 175, 497, 645, 680
AluI	AGCT	6 cut(s)	90, 169, 175, 497, 645, 680
AlwI	GGATC	2 cut(s)	15, 441
AoxI	GGCC	3 cut(s)	146, 199, 396
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	281, 554
AsuHPI	GGTGA	4 cut(s)	40, 61, 130, 170
AvaII	GGWCC	2 cut(s)	281, 554
BbvCI	CCTCAGC	1 cut(s)	114
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	675
BcuI	ACTAGT	1 cut(s)	293
BfaI	CTAG	3 cut(s)	222, 294, 422
BfmI	CTRYAG	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	2 cut(s)	281, 554
BmgT120I	GGNCC	2 cut(s)	281, 554
BmiI	GGNNCC	2 cut(s)	283, 532
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	1 cut(s)	310
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
BpmI	CTGGAG	1 cut(s)	640
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	464
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	623
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	623
BshFI	GGCC	3 cut(s)	148, 201, 398
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	2 cut(s)	149, 267
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	149, 267
BsmI	GAATGC	4 cut(s)	106, 217, 417, 607
BsnI	GGCC	3 cut(s)	148, 201, 398
Bsp143I	GATC	4 cut(s)	7, 412, 433, 487
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	3 cut(s)	148, 201, 398
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	283, 532
BspPI	GGATC	2 cut(s)	15, 441
BsrFI	RCCGGY	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	623
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	4 cut(s)	7, 412, 433, 487
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	5 cut(s)	132, 164, 191, 517, 638
BstACI	GRCGYC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	4 cut(s)	10, 415, 436, 490
BstMBI	GATC	4 cut(s)	7, 412, 433, 487
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 110, 386, 395, 611
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	1 cut(s)	597
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	1 cut(s)	520
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	148, 201, 398
BtsCI	GGATG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	281, 554
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	128, 205
CviAII	CATG	2 cut(s)	139, 594
CviQI	GTAC	2 cut(s)	128, 205
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	4 cut(s)	9, 414, 435, 489
DpnII	GATC	4 cut(s)	7, 412, 433, 487
Eco130I	CCWWGG	1 cut(s)	534
Eco147I	AGGCCT	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	281, 554
Eco57I	CTGAAG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	2 cut(s)	142, 597
FaiI	YATR	8 cut(s)	140, 261, 299, 318, 330, 563, 595, 660
FaqI	GGGAC	2 cut(s)	149, 267
FatI	CATG	2 cut(s)	138, 593
FblI	GTMKAC	1 cut(s)	519
FokI	GGATG	1 cut(s)	276
FspBI	CTAG	3 cut(s)	222, 294, 422
GlaI	GCGC	1 cut(s)	226
GsuI	CTGGAG	1 cut(s)	640
HaeIII	GGCC	3 cut(s)	148, 201, 398
HapII	CCGG	1 cut(s)	202
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	142, 597
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	2 cut(s)	371, 465
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	4 cut(s)	40, 61, 130, 170
Hpy166II	GTNNAC	5 cut(s)	180, 207, 269, 520, 554
Hpy188I	TCNGA	3 cut(s)	239, 376, 457
Hpy8I	GTNNAC	5 cut(s)	180, 207, 269, 520, 554
Hpy99I	CGWCG	2 cut(s)	68, 100
HpyAV	CCTTC	3 cut(s)	25, 67, 191
HpyCH4III	ACNGT	5 cut(s)	132, 164, 191, 517, 638
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	276, 323, 593
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 110, 386, 395, 611
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	142, 597
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	4 cut(s)	7, 412, 433, 487
LmnI	GCTCC	2 cut(s)	536, 677
LpnPI	CCDG	9 cut(s)	130, 199, 215, 227, 298, 422, 507, 604, 660
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	3 cut(s)	222, 294, 422
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	49, 158
MalI	GATC	4 cut(s)	9, 414, 435, 489
MboI	GATC	4 cut(s)	7, 412, 433, 487
MboII	GAAGA	2 cut(s)	482, 600
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	2 cut(s)	334, 366
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	7 cut(s)	25, 28, 70, 109, 148, 298, 617
Mph1103I	ATGCAT	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	675
Mva1269I	GAATGC	4 cut(s)	106, 217, 417, 607
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	5 cut(s)	101, 110, 386, 395, 611
NdeII	GATC	4 cut(s)	7, 412, 433, 487
NlaIII	CATG	2 cut(s)	142, 597
NlaIV	GGNNCC	2 cut(s)	283, 532
NmuCI	GTSAC	2 cut(s)	49, 158
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	148
PctI	GAATGC	4 cut(s)	106, 217, 417, 607
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	371, 465
PfoI	TCCNGGA	1 cut(s)	673
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	2 cut(s)	283, 532
PspPI	GGNCC	2 cut(s)	281, 554
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	2 cut(s)	129, 206
RsaNI	GTAC	2 cut(s)	128, 205
SaqAI	TTAA	1 cut(s)	393
Sau3AI	GATC	4 cut(s)	7, 412, 433, 487
Sau96I	GGNCC	2 cut(s)	281, 554
ScrFI	CCNGG	1 cut(s)	675
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	520
SinI	GGWCC	2 cut(s)	281, 554
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	293
Sse9I	AATT	2 cut(s)	334, 366
SseBI	AGGCCT	1 cut(s)	148
SsiI	CCGC	1 cut(s)	557
SspMI	CTAG	3 cut(s)	222, 294, 422
StuI	AGGCCT	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	5 cut(s)	132, 164, 191, 517, 638
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	63, 98
TasI	AATT	2 cut(s)	334, 366
TfiI	GAWTC	2 cut(s)	371, 465
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	2 cut(s)	49, 158
Tsp45I	GTSAC	2 cut(s)	49, 158
TspDTI	ATGAA	2 cut(s)	210, 366
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	2 cut(s)	281, 554
XceI	RCATGY	1 cut(s)	597
XmiI	GTMKAC	1 cut(s)	519
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	3 cut(s)	222, 294, 422
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.